RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 RBM12Q9NTZ6 932 aaKnown RBP8.46□□□□□ -1.06
HMGB1-203ENST00000341423 CFL2Q9Y281 166 aa8.46□□□□□ -1.06
HMGB1-203ENST00000341423 MTCH2Q9Y6C9 303 aa8.46□□□□□ -1.06
HMGB1-203ENST00000341423 ZBTB22O15209 634 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 CSHL1Q14406 222 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 HIBCHQ6NVY1 386 aaPredicted RBP8.45□□□□□ -1.06
HMGB1-203ENST00000341423 FAM173BQ6P4H8 233 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 DHRS13Q6UX07 377 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 LYSMD3Q7Z3D4 306 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 TC2NQ8N9U0 490 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 RCOR1Q9UKL0 485 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 TTC7AQ9ULT0 858 aaPredicted RBP8.45□□□□□ -1.06
HMGB1-203ENST00000341423 TMEM8BA6NDV4 472 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 ATP9AO75110 1047 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 EDN1P05305 212 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 TCF3P15923 654 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 SLC9A1P19634 815 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 PCMT1P22061 227 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 HNF4AP41235 474 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 PRIM2P49643 509 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 RAB15P59190 212 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 DEFB133Q30KQ1 61 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 ARSIQ5FYB1 569 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 ADGRF1Q5T601 910 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 LIPNQ5VXI9 398 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 KIAA0895LQ68EN5 471 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 GTF2IRD2BQ6EKJ0 949 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 GDPD4Q6W3E5 623 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 GTF2IRD2Q86UP8 949 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 ARFGAP2Q8N6H7 521 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 UBR7Q8N806 425 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 ANKRD52Q8NB46 1076 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 IL31RAQ8NI17 732 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 GAB3Q8WWW8 586 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 HGH1Q9BTY7 390 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 ULBP3Q9BZM4 244 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 CCSER1Q9C0I3 900 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 SLC6A16Q9GZN6 736 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 ARL15Q9NXU5 204 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 GJD2Q9UKL4 321 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 INTUQ9ULD6 942 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 COL3A1P02461 1466 aaPredicted RBP8.45□□□□□ -1.06
HMGB1-203ENST00000341423 SLC28A1O00337 649 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 PRICKLE3O43900 615 aaPredicted RBP8.45□□□□□ -1.06
HMGB1-203ENST00000341423 CIB2O75838 187 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 WDPCPO95876 746 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 IGHDP01880 384 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 UMPSP11172 480 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 FECHP22830 423 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 ATP5A1P25705 553 aaKnown RBP8.45□□□□□ -1.06
HMGB1-203ENST00000341423 CTHP32929 405 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 PRKAG1P54619 331 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 ANKRD20A4Q4UJ75 823 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 FLYWCH1Q4VC44 716 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 ANKRD20A1Q5TYW2 823 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 RBM43Q6ZSC3 357 aaKnown RBP8.45□□□□□ -1.06
HMGB1-203ENST00000341423 HMCESQ96FZ2 354 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 DPY30Q9C005 99 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 MTMR6Q9Y217 621 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 COQ6Q9Y2Z9 468 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 MIF4GDA9UHW6 222 aaKnown RBP8.45□□□□□ -1.06
HMGB1-203ENST00000341423 TNFSF14O43557 240 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 HAPLN1P10915 354 aaPredicted RBP8.45□□□□□ -1.06
HMGB1-203ENST00000341423 CYP11B1P15538 503 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 GDI2P50395 445 aaKnown RBP8.45□□□□□ -1.06
HMGB1-203ENST00000341423 ARSFP54793 590 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 STK4Q13043 487 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 SLC13A2Q13183 592 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 ACAP1Q15027 740 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 MAPKAPK3Q16644 382 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 ALFQ53S48 1182 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 TMEM198Q66K66 360 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 GATAD2AQ86YP4 633 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 MDGA1Q8NFP4 955 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 RFWD2Q8NHY2 731 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 CRELD1Q96HD1 420 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 LRGUKQ96M69 825 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 TEPSINQ96N21 525 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 AGPAT3Q9NRZ7 376 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 GTF2A1LQ9UNN4 478 aa8.45□□□□□ -1.06
HMGB1-203ENST00000341423 PTRH2Q9Y3E5 179 aaKnown RBP8.45□□□□□ -1.06
HMGB1-203ENST00000341423 MATN2O00339 956 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 PAK4O96013 591 aaPredicted RBP8.44□□□□□ -1.06
HMGB1-203ENST00000341423 CEBPBP17676 345 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 FMO5P49326 533 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 YBEYP58557 167 aaPredicted RBP8.44□□□□□ -1.06
HMGB1-203ENST00000341423 C1DQ13901 141 aaKnown RBP8.44□□□□□ -1.06
HMGB1-203ENST00000341423 ZNF542PQ5EBM4 170 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 GFRALQ6UXV0 394 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 ZDHHC14Q8IZN3 488 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 TERB1Q8NA31 727 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 METTL7AQ9H8H3 244 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 MTRRQ9UBK8 725 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 OR12D3Q9UGF7 316 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 FAM153AQ9UHL3 310 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 SNX8Q9Y5X2 465 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 ATRNL1Q5VV63 1379 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 CCT8L1PA6NM43 557 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 MDM4O15151 490 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 PSIP1O75475 530 aaKnown RBP8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms