RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 UPK3BL1B0FP48 263 aa22.3■■□□□ 1.16
SDC3-202ENST00000339394 UPK3BL2E5RIL1 263 aa22.3■■□□□ 1.16
SDC3-202ENST00000339394 PSMD3O43242 534 aa22.3■■□□□ 1.16
SDC3-202ENST00000339394 NDST3O95803 873 aa22.3■■□□□ 1.16
SDC3-202ENST00000339394 ATXN1LP0C7T5 689 aaKnown RBP22.3■■□□□ 1.16
SDC3-202ENST00000339394 ITIH2P19823 946 aa22.3■■□□□ 1.16
SDC3-202ENST00000339394 XPAP23025 273 aaPredicted RBP22.3■■□□□ 1.16
SDC3-202ENST00000339394 ABL2P42684 1182 aa22.3■■□□□ 1.16
SDC3-202ENST00000339394 LMAN1P49257 510 aa22.3■■□□□ 1.16
SDC3-202ENST00000339394 FNTBP49356 437 aa22.3■■□□□ 1.16
SDC3-202ENST00000339394 EPHB1P54762 984 aa22.3■■□□□ 1.16
SDC3-202ENST00000339394 SLC1A5Q15758 541 aa22.3■■□□□ 1.16
SDC3-202ENST00000339394 MAP7D1Q3KQU3 841 aa22.3■■□□□ 1.16
SDC3-202ENST00000339394 CCDC70Q6NSX1 233 aa22.3■■□□□ 1.16
SDC3-202ENST00000339394 C8orf74Q6P047 294 aa22.3■■□□□ 1.16
SDC3-202ENST00000339394 FRMD1Q8N878 549 aa22.3■■□□□ 1.16
SDC3-202ENST00000339394 LRRN4CLQ8ND94 238 aa22.3■■□□□ 1.16
SDC3-202ENST00000339394 LRRC45Q96CN5 670 aa22.3■■□□□ 1.16
SDC3-202ENST00000339394 RMDN1Q96DB5 314 aa22.3■■□□□ 1.16
SDC3-202ENST00000339394 APOL2Q9BQE5 337 aa22.3■■□□□ 1.16
SDC3-202ENST00000339394 ERP44Q9BS26 406 aa22.3■■□□□ 1.16
SDC3-202ENST00000339394 PCDH12Q9NPG4 1184 aa22.3■■□□□ 1.16
SDC3-202ENST00000339394 PPIL1Q9Y3C6 166 aa22.3■■□□□ 1.16
SDC3-202ENST00000339394 SLC7A4O43246 635 aa22.29■■□□□ 1.16
SDC3-202ENST00000339394 ACSL1P33121 698 aa22.29■■□□□ 1.16
SDC3-202ENST00000339394 CHRNA4P43681 627 aa22.29■■□□□ 1.16
SDC3-202ENST00000339394 NUBP1P53384 320 aa22.29■■□□□ 1.16
SDC3-202ENST00000339394 TAS2R38P59533 333 aa22.29■■□□□ 1.16
SDC3-202ENST00000339394 USP39Q53GS9 565 aaKnown RBP22.29■■□□□ 1.16
SDC3-202ENST00000339394 SIRPB2Q5JXA9 342 aa22.29■■□□□ 1.16
SDC3-202ENST00000339394 LONP2Q86WA8 852 aa22.29■■□□□ 1.16
SDC3-202ENST00000339394 SLC25A41Q8N5S1 370 aa22.29■■□□□ 1.16
SDC3-202ENST00000339394 OR14C36Q8NHC7 312 aa22.29■■□□□ 1.16
SDC3-202ENST00000339394 CPT1BQ92523 772 aa22.29■■□□□ 1.16
SDC3-202ENST00000339394 RAB7BQ96AH8 199 aa22.29■■□□□ 1.16
SDC3-202ENST00000339394 SMIM14Q96QK8 99 aa22.29■■□□□ 1.16
SDC3-202ENST00000339394 TBL1YQ9BQ87 522 aa22.29■■□□□ 1.16
SDC3-202ENST00000339394 TRIM31Q9BZY9 425 aa22.29■■□□□ 1.16
SDC3-202ENST00000339394 BTBD1Q9H0C5 482 aa22.29■■□□□ 1.16
SDC3-202ENST00000339394 DMDP11532 3685 aa22.29■■□□□ 1.16
SDC3-202ENST00000339394 A0A0J9YYE9 177 aa22.29■■□□□ 1.16
SDC3-202ENST00000339394 TCRBV7S3A2A0A539 114 aa22.29■■□□□ 1.16
SDC3-202ENST00000339394 EFCAB8A8MWE9 144 aa22.29■■□□□ 1.16
SDC3-202ENST00000339394 RIOK3O14730 519 aaKnown RBP22.29■■□□□ 1.16
SDC3-202ENST00000339394 AREL1O15033 823 aa22.29■■□□□ 1.16
SDC3-202ENST00000339394 GALR2O43603 387 aaPredicted RBP22.29■■□□□ 1.16
SDC3-202ENST00000339394 SUN1O94901 812 aa22.29■■□□□ 1.16
SDC3-202ENST00000339394 TRBC1P01850 177 aa22.29■■□□□ 1.16
SDC3-202ENST00000339394 CTPS1P17812 591 aa22.29■■□□□ 1.16
SDC3-202ENST00000339394 HLA-DPA1P20036 260 aa22.29■■□□□ 1.16
SDC3-202ENST00000339394 OXTRP30559 389 aa22.29■■□□□ 1.16
SDC3-202ENST00000339394 MAGEA6P43360 314 aa22.29■■□□□ 1.16
SDC3-202ENST00000339394 GRIA4P48058 902 aa22.29■■□□□ 1.16
SDC3-202ENST00000339394 SUOXP51687 545 aa22.29■■□□□ 1.16
SDC3-202ENST00000339394 ADPRHP54922 357 aa22.29■■□□□ 1.16
SDC3-202ENST00000339394 PTPRRQ15256 657 aa22.29■■□□□ 1.16
SDC3-202ENST00000339394 QPCTQ16769 361 aa22.29■■□□□ 1.16
SDC3-202ENST00000339394 FAM160A2Q8N612 972 aaPredicted RBP22.29■■□□□ 1.16
SDC3-202ENST00000339394 SCRN2Q96FV2 425 aa22.29■■□□□ 1.16
SDC3-202ENST00000339394 EIF2B3Q9NR50 452 aaKnown RBP22.29■■□□□ 1.16
SDC3-202ENST00000339394 TPX2Q9ULW0 747 aaKnown RBP22.29■■□□□ 1.16
SDC3-202ENST00000339394 INVSQ9Y283 1065 aa22.29■■□□□ 1.16
SDC3-202ENST00000339394 ITM2BQ9Y287 266 aa22.29■■□□□ 1.16
SDC3-202ENST00000339394 FADS3Q9Y5Q0 445 aa22.29■■□□□ 1.16
SDC3-202ENST00000339394 IGHV1OR15-9A0A0B4J2B8 117 aa22.28■■□□□ 1.16
SDC3-202ENST00000339394 SPINT1O43278 529 aa22.28■■□□□ 1.16
SDC3-202ENST00000339394 PLRG1O43660 514 aaKnown RBP22.28■■□□□ 1.16
SDC3-202ENST00000339394 ALPIP09923 528 aa22.28■■□□□ 1.16
SDC3-202ENST00000339394 CD6P30203 668 aa22.28■■□□□ 1.16
SDC3-202ENST00000339394 FAM193AP78312 1265 aa22.28■■□□□ 1.16
SDC3-202ENST00000339394 SLC7A5Q01650 507 aa22.28■■□□□ 1.16
SDC3-202ENST00000339394 SEMG2Q02383 582 aa22.28■■□□□ 1.16
SDC3-202ENST00000339394 KCNJ11Q14654 390 aa22.28■■□□□ 1.16
SDC3-202ENST00000339394 ZNF528Q3MIS6 628 aa22.28■■□□□ 1.16
SDC3-202ENST00000339394 ANKRD22Q5VYY1 191 aa22.28■■□□□ 1.16
SDC3-202ENST00000339394 NAPEPLDQ6IQ20 393 aa22.28■■□□□ 1.16
SDC3-202ENST00000339394 DENND5AQ6IQ26 1287 aa22.28■■□□□ 1.16
SDC3-202ENST00000339394 ERAP2Q6P179 960 aa22.28■■□□□ 1.16
SDC3-202ENST00000339394 WDR5BQ86VZ2 330 aa22.28■■□□□ 1.16
SDC3-202ENST00000339394 NDUFAF2Q8N183 169 aa22.28■■□□□ 1.16
SDC3-202ENST00000339394 NELL1Q92832 810 aa22.28■■□□□ 1.16
SDC3-202ENST00000339394 TOE1Q96GM8 510 aaKnown RBP22.28■■□□□ 1.16
SDC3-202ENST00000339394 MCCC1Q96RQ3 725 aaPredicted RBP22.28■■□□□ 1.16
SDC3-202ENST00000339394 FAM126AQ9BYI3 521 aaPredicted RBP22.28■■□□□ 1.16
SDC3-202ENST00000339394 SGK2Q9HBY8 427 aa22.28■■□□□ 1.16
SDC3-202ENST00000339394 WSB2Q9NYS7 404 aaPredicted RBP22.28■■□□□ 1.16
SDC3-202ENST00000339394 UTP11Q9Y3A2 253 aaKnown RBP22.28■■□□□ 1.16
SDC3-202ENST00000339394 DNALI1O14645 258 aaPredicted RBP22.27■■□□□ 1.16
SDC3-202ENST00000339394 TPSB2P20231 275 aa22.27■■□□□ 1.16
SDC3-202ENST00000339394 HNF1BP35680 557 aa22.27■■□□□ 1.16
SDC3-202ENST00000339394 GRIA1P42261 906 aa22.27■■□□□ 1.16
SDC3-202ENST00000339394 CDK16Q00536 496 aa22.27■■□□□ 1.16
SDC3-202ENST00000339394 TPSAB1Q15661 275 aa22.27■■□□□ 1.16
SDC3-202ENST00000339394 GLE1Q53GS7 698 aaKnown RBP22.27■■□□□ 1.16
SDC3-202ENST00000339394 RNASEH2BQ5TBB1 312 aaKnown RBP22.27■■□□□ 1.16
SDC3-202ENST00000339394 USP45Q70EL2 814 aa22.27■■□□□ 1.16
SDC3-202ENST00000339394 LINC00523Q86TU6 105 aa22.27■■□□□ 1.16
SDC3-202ENST00000339394 NAT8LQ8N9F0 302 aa22.27■■□□□ 1.16
SDC3-202ENST00000339394 HINFPQ9BQA5 517 aa22.27■■□□□ 1.16
SDC3-202ENST00000339394 ARNT2Q9HBZ2 717 aa22.27■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms