RNA–Protein interactions for RNA: ENST00000337331.9

NPHP3-201, Transcript of nephrocystin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP3, Length 4,362 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-201ENST00000337331 CDHR5Q9HBB8 845 aa16.16■□□□□ 0.18
NPHP3-201ENST00000337331 TMEM191CA6NGB0 347 aa16.15■□□□□ 0.18
NPHP3-201ENST00000337331 GJB1P08034 283 aa16.15■□□□□ 0.18
NPHP3-201ENST00000337331 ITIH1P19827 911 aa16.15■□□□□ 0.18
NPHP3-201ENST00000337331 ITGALP20701 1170 aa16.15■□□□□ 0.18
NPHP3-201ENST00000337331 MMP8P22894 467 aa16.15■□□□□ 0.18
NPHP3-201ENST00000337331 CCT3P49368 545 aaKnown RBP16.15■□□□□ 0.18
NPHP3-201ENST00000337331 CPT1BQ92523 772 aa16.15■□□□□ 0.18
NPHP3-201ENST00000337331 CERS2Q96G23 380 aa16.15■□□□□ 0.18
NPHP3-201ENST00000337331 NSMCE2Q96MF7 247 aa16.15■□□□□ 0.18
NPHP3-201ENST00000337331 GAD1Q99259 594 aa16.15■□□□□ 0.18
NPHP3-201ENST00000337331 ACOX2Q99424 681 aa16.15■□□□□ 0.18
NPHP3-201ENST00000337331 VAT1Q99536 393 aa16.15■□□□□ 0.18
NPHP3-201ENST00000337331 SIAEQ9HAT2 523 aa16.15■□□□□ 0.18
NPHP3-201ENST00000337331 NDUFAF1Q9Y375 327 aa16.15■□□□□ 0.18
NPHP3-201ENST00000337331 PCDHB7Q9Y5E2 793 aa16.15■□□□□ 0.18
NPHP3-201ENST00000337331 RAD54BQ9Y620 910 aa16.15■□□□□ 0.18
NPHP3-201ENST00000337331 CCDC162PA2VCL2 907 aa16.15■□□□□ 0.18
NPHP3-201ENST00000337331 SPANXN2Q5MJ10 180 aa16.15■□□□□ 0.18
NPHP3-201ENST00000337331 OGFRL1Q5TC84 451 aaPredicted RBP16.15■□□□□ 0.18
NPHP3-201ENST00000337331 SLC44A2Q8IWA5 706 aaPredicted RBP16.15■□□□□ 0.18
NPHP3-201ENST00000337331 FBXO39Q8N4B4 442 aa16.15■□□□□ 0.18
NPHP3-201ENST00000337331 C12orf29Q8N999 325 aa16.15■□□□□ 0.18
NPHP3-201ENST00000337331 PPP1R13LQ8WUF5 828 aa16.15■□□□□ 0.18
NPHP3-201ENST00000337331 FIG4Q92562 907 aa16.15■□□□□ 0.18
NPHP3-201ENST00000337331 ACO2Q99798 780 aaKnown RBP16.15■□□□□ 0.18
NPHP3-201ENST00000337331 B4GALT5O43286 388 aa16.15■□□□□ 0.18
NPHP3-201ENST00000337331 DBTP11182 482 aaKnown RBP16.15■□□□□ 0.18
NPHP3-201ENST00000337331 BDNFP23560 247 aa16.15■□□□□ 0.18
NPHP3-201ENST00000337331 RHOAP61586 193 aa16.15■□□□□ 0.18
NPHP3-201ENST00000337331 UBE2UQ5VVX9 321 aa16.15■□□□□ 0.18
NPHP3-201ENST00000337331 RNF180Q86T96 592 aa16.15■□□□□ 0.18
NPHP3-201ENST00000337331 LZTR1Q8N653 840 aa16.15■□□□□ 0.18
NPHP3-201ENST00000337331 VPS33AQ96AX1 596 aa16.15■□□□□ 0.18
NPHP3-201ENST00000337331 SMARCD1Q96GM5 515 aa16.15■□□□□ 0.18
NPHP3-201ENST00000337331 SENP8Q96LD8 212 aa16.15■□□□□ 0.18
NPHP3-201ENST00000337331 OR12D3Q9UGF7 316 aa16.15■□□□□ 0.18
NPHP3-201ENST00000337331 CRYL1Q9Y2S2 319 aa16.15■□□□□ 0.18
NPHP3-201ENST00000337331 PPP2R3BQ9Y5P8 575 aa16.15■□□□□ 0.18
NPHP3-201ENST00000337331 RGPD8O14715 1765 aaPredicted RBP16.15■□□□□ 0.18
NPHP3-201ENST00000337331 H0Y858 1186 aa16.15■□□□□ 0.18
NPHP3-201ENST00000337331 TRIM24O15164 1050 aa16.15■□□□□ 0.18
NPHP3-201ENST00000337331 BUD23O43709 281 aaKnown RBP16.15■□□□□ 0.18
NPHP3-201ENST00000337331 ZNF682O95780 498 aa16.15■□□□□ 0.18
NPHP3-201ENST00000337331 OR1E1P30953 314 aa16.15■□□□□ 0.18
NPHP3-201ENST00000337331 TBX4P57082 545 aa16.15■□□□□ 0.18
NPHP3-201ENST00000337331 GPX6P59796 221 aa16.15■□□□□ 0.18
NPHP3-201ENST00000337331 SF3B4Q15427 424 aaKnown RBP eCLIP16.15■□□□□ 0.18
NPHP3-201ENST00000337331 PSTKQ8IV42 348 aaKnown RBP16.15■□□□□ 0.18
NPHP3-201ENST00000337331 CLIP3Q96DZ5 547 aa16.15■□□□□ 0.18
NPHP3-201ENST00000337331 LGMNQ99538 433 aa16.15■□□□□ 0.18
NPHP3-201ENST00000337331 NEK6Q9HC98 313 aa16.15■□□□□ 0.18
NPHP3-201ENST00000337331 SNAP91O60641 907 aa16.14■□□□□ 0.17
NPHP3-201ENST00000337331 MT-ND1P03886 318 aa16.14■□□□□ 0.17
NPHP3-201ENST00000337331 AMHP03971 560 aa16.14■□□□□ 0.17
NPHP3-201ENST00000337331 LRPAP1P30533 357 aa16.14■□□□□ 0.17
NPHP3-201ENST00000337331 RPL14P50914 215 aaKnown RBP16.14■□□□□ 0.17
NPHP3-201ENST00000337331 TRIM32Q13049 653 aa16.14■□□□□ 0.17
NPHP3-201ENST00000337331 PTPN20Q4JDL3 420 aa16.14■□□□□ 0.17
NPHP3-201ENST00000337331 MCFD2Q8NI22 146 aa16.14■□□□□ 0.17
NPHP3-201ENST00000337331 SLCO2A1Q92959 643 aa16.14■□□□□ 0.17
NPHP3-201ENST00000337331 EBNA1BP2Q99848 306 aaKnown RBP16.14■□□□□ 0.17
NPHP3-201ENST00000337331 SCUBE2Q9NQ36 999 aa16.14■□□□□ 0.17
NPHP3-201ENST00000337331 SFMBT1Q9UHJ3 866 aa16.14■□□□□ 0.17
NPHP3-201ENST00000337331 MAFO75444 373 aaPredicted RBP16.14■□□□□ 0.17
NPHP3-201ENST00000337331 LYPLA2O95372 231 aa16.14■□□□□ 0.17
NPHP3-201ENST00000337331 AKR1D1P51857 326 aa16.14■□□□□ 0.17
NPHP3-201ENST00000337331 GNG2P59768 71 aa16.14■□□□□ 0.17
NPHP3-201ENST00000337331 TNFAIP8L3Q5GJ75 292 aa16.14■□□□□ 0.17
NPHP3-201ENST00000337331 CENPLQ8N0S6 344 aaPredicted RBP16.14■□□□□ 0.17
NPHP3-201ENST00000337331 Q8N9G6 341 aaPredicted RBP16.14■□□□□ 0.17
NPHP3-201ENST00000337331 NETO2Q8NC67 525 aa16.14■□□□□ 0.17
NPHP3-201ENST00000337331 TRPM5Q9NZQ8 1165 aa16.14■□□□□ 0.17
NPHP3-201ENST00000337331 SF3B1O75533 1304 aaKnown RBP eCLIP16.14■□□□□ 0.17
NPHP3-201ENST00000337331 FAM95CA0A1B0GW59 222 aa16.14■□□□□ 0.17
NPHP3-201ENST00000337331 F8W810 466 aa16.14■□□□□ 0.17
NPHP3-201ENST00000337331 ITGB6P18564 788 aa16.14■□□□□ 0.17
NPHP3-201ENST00000337331 PWP1Q13610 501 aa16.14■□□□□ 0.17
NPHP3-201ENST00000337331 CATSPERGQ6ZRH7 1159 aa16.14■□□□□ 0.17
NPHP3-201ENST00000337331 GPR180Q86V85 440 aa16.14■□□□□ 0.17
NPHP3-201ENST00000337331 UNC93AQ86WB7 457 aa16.14■□□□□ 0.17
NPHP3-201ENST00000337331 UBR7Q8N806 425 aa16.14■□□□□ 0.17
NPHP3-201ENST00000337331 LPCAT1Q8NF37 534 aa16.14■□□□□ 0.17
NPHP3-201ENST00000337331 RAB2BQ8WUD1 216 aa16.14■□□□□ 0.17
NPHP3-201ENST00000337331 FAM120BQ96EK7 910 aaKnown RBP16.14■□□□□ 0.17
NPHP3-201ENST00000337331 HSFY1Q96LI6 401 aa16.14■□□□□ 0.17
NPHP3-201ENST00000337331 CCDC106Q9BWC9 280 aa16.14■□□□□ 0.17
NPHP3-201ENST00000337331 XRN1Q8IZH2 1706 aaKnown RBP16.14■□□□□ 0.17
NPHP3-201ENST00000337331 H3BNH8 94 aa16.13■□□□□ 0.17
NPHP3-201ENST00000337331 KATNA1O75449 491 aa16.13■□□□□ 0.17
NPHP3-201ENST00000337331 CCNE2O96020 404 aa16.13■□□□□ 0.17
NPHP3-201ENST00000337331 MBL2P11226 248 aaPredicted RBP16.13■□□□□ 0.17
NPHP3-201ENST00000337331 WSCD1Q658N2 575 aa16.13■□□□□ 0.17
NPHP3-201ENST00000337331 CARNMT1Q8N4J0 409 aa16.13■□□□□ 0.17
NPHP3-201ENST00000337331 DDX51Q8N8A6 666 aaKnown RBP eCLIP16.13■□□□□ 0.17
NPHP3-201ENST00000337331 KCTD14Q9BQ13 255 aaPredicted RBP16.13■□□□□ 0.17
NPHP3-201ENST00000337331 SLC25A23Q9BV35 468 aa16.13■□□□□ 0.17
NPHP3-201ENST00000337331 ELOVL6Q9H5J4 265 aa16.13■□□□□ 0.17
NPHP3-201ENST00000337331 TOR4AQ9NXH8 423 aa16.13■□□□□ 0.17
NPHP3-201ENST00000337331 TAS2R13Q9NYV9 303 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms