RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 TJP2Q9UDY2 1190 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 AGO2Q9UKV8 859 aaKnown RBP7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 PNMA3Q9UL41 463 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 PCDHA6Q9UN73 950 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 V9GY48 417 aaPredicted RBP7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 SUPT6HQ7KZ85 1726 aaKnown RBP7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 ISPDA4D126 451 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 FASP25445 335 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 STT3AP46977 705 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 ZNF132P52740 706 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 PTTG1IPP53801 180 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 ZNF211Q13398 564 aaPredicted RBP7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 PPP1R3AQ16821 1122 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 SCGB2B2Q4G0G5 96 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 SLC39A12Q504Y0 691 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 FAM98BQ52LJ0 330 aaKnown RBP7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 GALNT10Q86SR1 603 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 MAGEB6Q8N7X4 407 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 SLC7A3Q8WY07 619 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 FAM49AQ9H0Q0 323 aaPredicted RBP7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 DNAJC18Q9H819 358 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 ACSS1Q9NUB1 689 aaPredicted RBP7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 ABCB8Q9NUT2 735 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 ARMC1Q9NVT9 282 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 CLIC5Q9NZA1 410 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 KCNH4Q9UQ05 1017 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 ALG6Q9Y672 507 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 MGAT4DA6NG13 374 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 RD3LP0DJH9 198 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 RAG1P15918 1043 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 PEX6Q13608 980 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 PCSK7Q16549 785 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 PAGE2BQ5JRK9 111 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 BBS12Q6ZW61 710 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 NLRX1Q86UT6 975 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 OR51D1Q8NGF3 324 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 C2CD4CQ8TF44 421 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 RSC1A1Q92681 617 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 FAM83DQ9H4H8 585 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 TCF7L2Q9NQB0 619 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 CLN6Q9NWW5 311 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 KCNG1Q9UIX4 513 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 ACSL5Q9ULC5 683 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 PCDHAC2Q9Y5I4 1007 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 CSADQ9Y600 493 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 ARHGAP31Q2M1Z3 1444 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 RALGAPBQ86X10 1494 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 PODXLO00592 558 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 PRPF3O43395 683 aaKnown RBP7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 PSAPP07602 524 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 NQO1P15559 274 aaKnown RBP7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 RHCEP18577 417 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 TNFRSF8P28908 595 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 ETFBP38117 255 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 ARRB1P49407 418 aaPredicted RBP7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 ADAM8P78325 824 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 BMPR2Q13873 1038 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 LRIF1Q5T3J3 769 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 KCTD9Q7L273 389 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 SH2D3CQ8N5H7 860 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 THAP6Q8TBB0 222 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 ATP13A3Q9H7F0 1226 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 NUDT15Q9NV35 164 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 GPRC5DQ9NZD1 345 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 MAT2BQ9NZL9 334 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 UXTQ9UBK9 157 aaPredicted RBP7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 SEC14L4Q9UDX3 406 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 CORO2BQ9UQ03 480 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 PLEKHA6Q9Y2H5 1048 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 FRMPD4Q14CM0 1322 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 TMEM218A2RU14 115 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 MSX1P28360 303 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 SSTR3P32745 418 aaPredicted RBP7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 CX3CR1P49238 355 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 SERPINB9P50453 376 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 DDR1Q08345 913 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 TRMT2AQ8IZ69 625 aaKnown RBP7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 FAM98AQ8NCA5 519 aaKnown RBP7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 CNOT6LQ96LI5 555 aaKnown RBP7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 ZNF75AQ96N20 296 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 CDC6Q99741 560 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 CCDC3Q9BQI4 270 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 LRRC1Q9BTT6 524 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 AS3MTQ9HBK9 375 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 ASF1BQ9NVP2 202 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 SIRPGQ9P1W8 387 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 GJA3Q9Y6H8 435 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 INMTO95050 263 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 PRKCGP05129 697 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 PPP3CBP16298 524 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 MAD2L1Q13257 205 aaPredicted RBP7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 INO80DQ53TQ3 878 aaPredicted RBP7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 NDUFAF5Q5TEU4 345 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 KCTD8Q6ZWB6 473 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 ZNF627Q7L945 461 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 YAF2Q8IY57 180 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 OR52L1Q8NGH7 329 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 SCGB1C1Q8TD33 95 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 SEC14L1Q92503 715 aa7.67□□□□□ -1.18
LIMCH1-201ENST00000313860 RHBDF1Q96CC6 855 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms