RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 ENPP7Q6UWV6 458 aa12.87□□□□□ -0.35
CD44-203ENST00000278386 CLEC17AQ6ZS10 378 aa12.87□□□□□ -0.35
CD44-203ENST00000278386 RD3Q7Z3Z2 195 aa12.87□□□□□ -0.35
CD44-203ENST00000278386 FSTL5Q8N475 847 aaPredicted RBP12.87□□□□□ -0.35
CD44-203ENST00000278386 ARL10Q8N8L6 244 aa12.87□□□□□ -0.35
CD44-203ENST00000278386 SCG3Q8WXD2 468 aaKnown RBP12.87□□□□□ -0.35
CD44-203ENST00000278386 TSACCQ96A04 125 aaPredicted RBP12.87□□□□□ -0.35
CD44-203ENST00000278386 HIC2Q96JB3 615 aa12.87□□□□□ -0.35
CD44-203ENST00000278386 LRRC19Q9H756 370 aa12.87□□□□□ -0.35
CD44-203ENST00000278386 ATP13A3Q9H7F0 1226 aa12.87□□□□□ -0.35
CD44-203ENST00000278386 PDFQ9HBH1 243 aa12.87□□□□□ -0.35
CD44-203ENST00000278386 CPNE5Q9HCH3 593 aa12.87□□□□□ -0.35
CD44-203ENST00000278386 ASCL3Q9NQ33 180 aa12.87□□□□□ -0.35
CD44-203ENST00000278386 WDR70Q9NW82 654 aa12.87□□□□□ -0.35
CD44-203ENST00000278386 TAS2R14Q9NYV8 317 aa12.87□□□□□ -0.35
CD44-203ENST00000278386 KLQ9UEF7 1012 aa12.87□□□□□ -0.35
CD44-203ENST00000278386 PADI4Q9UM07 663 aa12.87□□□□□ -0.35
CD44-203ENST00000278386 ATP8A1Q9Y2Q0 1164 aa12.87□□□□□ -0.35
CD44-203ENST00000278386 OR1A2Q9Y585 309 aa12.87□□□□□ -0.35
CD44-203ENST00000278386 SCN8AQ9UQD0 1980 aa12.87□□□□□ -0.35
CD44-203ENST00000278386 TMEM110-MUSTN1A8MSY1 372 aa12.86□□□□□ -0.35
CD44-203ENST00000278386 TK2O00142 265 aa12.86□□□□□ -0.35
CD44-203ENST00000278386 DFFAO00273 331 aa12.86□□□□□ -0.35
CD44-203ENST00000278386 PRAMEF11O60813 436 aa12.86□□□□□ -0.35
CD44-203ENST00000278386 PALMO75781 387 aa12.86□□□□□ -0.35
CD44-203ENST00000278386 LIG3P49916 1009 aa12.86□□□□□ -0.35
CD44-203ENST00000278386 PAPOLAP51003 745 aaKnown RBP12.86□□□□□ -0.35
CD44-203ENST00000278386 HK3P52790 923 aa12.86□□□□□ -0.35
CD44-203ENST00000278386 INPP5AQ14642 412 aa12.86□□□□□ -0.35
CD44-203ENST00000278386 ALG11Q2TAA5 492 aa12.86□□□□□ -0.35
CD44-203ENST00000278386 WSCD2Q2TBF2 565 aa12.86□□□□□ -0.35
CD44-203ENST00000278386 TAF1BQ53T94 588 aaPredicted RBP12.86□□□□□ -0.35
CD44-203ENST00000278386 PPP6R3Q5H9R7 873 aaPredicted RBP12.86□□□□□ -0.35
CD44-203ENST00000278386 ARHGAP40Q5TG30 622 aa12.86□□□□□ -0.35
CD44-203ENST00000278386 GKN2Q86XP6 184 aa12.86□□□□□ -0.35
CD44-203ENST00000278386 CAMK1DQ8IU85 385 aa12.86□□□□□ -0.35
CD44-203ENST00000278386 ATL2Q8NHH9 583 aa12.86□□□□□ -0.35
CD44-203ENST00000278386 WDR48Q8TAF3 677 aa12.86□□□□□ -0.35
CD44-203ENST00000278386 GRAMD1AQ96CP6 724 aa12.86□□□□□ -0.35
CD44-203ENST00000278386 PDXPQ96GD0 296 aa12.86□□□□□ -0.35
CD44-203ENST00000278386 WDR92Q96MX6 357 aa12.86□□□□□ -0.35
CD44-203ENST00000278386 ZNF641Q96N77 438 aaPredicted RBP12.86□□□□□ -0.35
CD44-203ENST00000278386 TUBGCP5Q96RT8 1024 aa12.86□□□□□ -0.35
CD44-203ENST00000278386 KCTD15Q96SI1 283 aaPredicted RBP12.86□□□□□ -0.35
CD44-203ENST00000278386 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.86□□□□□ -0.35
CD44-203ENST00000278386 APOOQ9BUR5 198 aa12.86□□□□□ -0.35
CD44-203ENST00000278386 SNRNP25Q9BV90 132 aaKnown RBP12.86□□□□□ -0.35
CD44-203ENST00000278386 EDEM3Q9BZQ6 932 aa12.86□□□□□ -0.35
CD44-203ENST00000278386 PARVAQ9NVD7 372 aa12.86□□□□□ -0.35
CD44-203ENST00000278386 PCSK1NQ9UHG2 260 aa12.86□□□□□ -0.35
CD44-203ENST00000278386 GPR34Q9UPC5 381 aa12.86□□□□□ -0.35
CD44-203ENST00000278386 CCDC187A0A096LP49 1063 aa12.85□□□□□ -0.35
CD44-203ENST00000278386 LRRC53A6NM62 1247 aa12.85□□□□□ -0.35
CD44-203ENST00000278386 CASC3O15234 703 aaKnown RBP12.85□□□□□ -0.35
CD44-203ENST00000278386 C1QL1O75973 258 aa12.85□□□□□ -0.35
CD44-203ENST00000278386 ELFN1P0C7U0 828 aa12.85□□□□□ -0.35
CD44-203ENST00000278386 ATP1A3P13637 1013 aa12.85□□□□□ -0.35
CD44-203ENST00000278386 RGRP47804 291 aa12.85□□□□□ -0.35
CD44-203ENST00000278386 PEX5P50542 639 aa12.85□□□□□ -0.35
CD44-203ENST00000278386 PDX1P52945 283 aa12.85□□□□□ -0.35
CD44-203ENST00000278386 SRP54P61011 504 aaKnown RBP12.85□□□□□ -0.35
CD44-203ENST00000278386 BCL2L1Q07817 233 aa12.85□□□□□ -0.35
CD44-203ENST00000278386 MAMLD1Q13495 774 aa12.85□□□□□ -0.35
CD44-203ENST00000278386 MTM1Q13496 603 aa12.85□□□□□ -0.35
CD44-203ENST00000278386 ASIC2Q16515 512 aa12.85□□□□□ -0.35
CD44-203ENST00000278386 CA9Q16790 459 aa12.85□□□□□ -0.35
CD44-203ENST00000278386 CCDC183Q5T5S1 534 aa12.85□□□□□ -0.35
CD44-203ENST00000278386 IGF2-ASQ6U949 168 aa12.85□□□□□ -0.35
CD44-203ENST00000278386 RFX8Q6ZV50 586 aa12.85□□□□□ -0.35
CD44-203ENST00000278386 SRLQ86TD4 932 aa12.85□□□□□ -0.35
CD44-203ENST00000278386 ZSWIM9Q86XI8 627 aa12.85□□□□□ -0.35
CD44-203ENST00000278386 ARL14Q8N4G2 192 aa12.85□□□□□ -0.35
CD44-203ENST00000278386 TSEN2Q8NCE0 465 aaKnown RBP12.85□□□□□ -0.35
CD44-203ENST00000278386 WDR36Q8NI36 951 aaKnown RBP12.85□□□□□ -0.35
CD44-203ENST00000278386 HCAR2Q8TDS4 363 aa12.85□□□□□ -0.35
CD44-203ENST00000278386 CCDC74AQ96AQ1 378 aa12.85□□□□□ -0.35
CD44-203ENST00000278386 GFM1Q96RP9 751 aaKnown RBP12.85□□□□□ -0.35
CD44-203ENST00000278386 PEBP4Q96S96 227 aa12.85□□□□□ -0.35
CD44-203ENST00000278386 DPH1Q9BZG8 443 aa12.85□□□□□ -0.35
CD44-203ENST00000278386 SLC39A8Q9C0K1 460 aa12.85□□□□□ -0.35
CD44-203ENST00000278386 EPB41L5Q9HCM4 733 aa12.85□□□□□ -0.35
CD44-203ENST00000278386 PCDHGA8Q9Y5G5 932 aa12.85□□□□□ -0.35
CD44-203ENST00000278386 ARHGEF17Q96PE2 2063 aaPredicted RBP12.85□□□□□ -0.35
CD44-203ENST00000278386 UNC13CQ8NB66 2214 aa12.85□□□□□ -0.35
CD44-203ENST00000278386 A0A1W2PNU3 283 aaPredicted RBP12.84□□□□□ -0.35
CD44-203ENST00000278386 PMS2P1A4D2B8 440 aa12.84□□□□□ -0.35
CD44-203ENST00000278386 EIF3CLB5ME19 914 aaKnown RBP12.84□□□□□ -0.35
CD44-203ENST00000278386 ERVH48-1M5A8F1 160 aa12.84□□□□□ -0.35
CD44-203ENST00000278386 CACNB4O00305 520 aaPredicted RBP12.84□□□□□ -0.35
CD44-203ENST00000278386 PRPSAP2O60256 369 aa12.84□□□□□ -0.35
CD44-203ENST00000278386 BUB1BO60566 1050 aaPredicted RBP12.84□□□□□ -0.35
CD44-203ENST00000278386 RNF8O76064 485 aa12.84□□□□□ -0.35
CD44-203ENST00000278386 TNFP01375 233 aa12.84□□□□□ -0.35
CD44-203ENST00000278386 RPLP0P05388 317 aaKnown RBP12.84□□□□□ -0.35
CD44-203ENST00000278386 ERCC2P18074 760 aa12.84□□□□□ -0.35
CD44-203ENST00000278386 TYRO3Q06418 890 aa12.84□□□□□ -0.35
CD44-203ENST00000278386 NCAPHQ15003 741 aa12.84□□□□□ -0.35
CD44-203ENST00000278386 ERMARDQ5T6L9 678 aa12.84□□□□□ -0.35
CD44-203ENST00000278386 ARHGAP36Q6ZRI8 547 aa12.84□□□□□ -0.35
CD44-203ENST00000278386 APTXQ7Z2E3 356 aaKnown RBP12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms