RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 AK5Q9Y6K8 562 aa9.82□□□□□ -0.84
VPS41-201ENST00000265745 ATRXP46100 2492 aa9.82□□□□□ -0.84
VPS41-201ENST00000265745 TOR1BO14657 336 aa9.81□□□□□ -0.84
VPS41-201ENST00000265745 TPP1O14773 563 aa9.81□□□□□ -0.84
VPS41-201ENST00000265745 DAPK3O43293 454 aa9.81□□□□□ -0.84
VPS41-201ENST00000265745 AQP9O43315 295 aa9.81□□□□□ -0.84
VPS41-201ENST00000265745 LRCH4O75427 683 aa9.81□□□□□ -0.84
VPS41-201ENST00000265745 GCATO75600 419 aa9.81□□□□□ -0.84
VPS41-201ENST00000265745 PALMO75781 387 aa9.81□□□□□ -0.84
VPS41-201ENST00000265745 PIGNO95427 931 aa9.81□□□□□ -0.84
VPS41-201ENST00000265745 SERPINC1P01008 464 aa9.81□□□□□ -0.84
VPS41-201ENST00000265745 MYBL1P10243 752 aa9.81□□□□□ -0.84
VPS41-201ENST00000265745 XPAP23025 273 aaPredicted RBP9.81□□□□□ -0.84
VPS41-201ENST00000265745 PCK1P35558 622 aa9.81□□□□□ -0.84
VPS41-201ENST00000265745 IGFALSP35858 605 aa9.81□□□□□ -0.84
VPS41-201ENST00000265745 EIF4A3P38919 411 aaKnown RBP9.81□□□□□ -0.84
VPS41-201ENST00000265745 DUSP3P51452 185 aaPredicted RBP9.81□□□□□ -0.84
VPS41-201ENST00000265745 ZNF135P52742 658 aaPredicted RBP9.81□□□□□ -0.84
VPS41-201ENST00000265745 THOP1P52888 689 aa9.81□□□□□ -0.84
VPS41-201ENST00000265745 NSUN2Q08J23 767 aaKnown RBP eCLIP9.81□□□□□ -0.84
VPS41-201ENST00000265745 ELP6Q0PNE2 266 aa9.81□□□□□ -0.84
VPS41-201ENST00000265745 DPYSQ14117 519 aa9.81□□□□□ -0.84
VPS41-201ENST00000265745 LRRC14Q15048 493 aa9.81□□□□□ -0.84
VPS41-201ENST00000265745 WSCD2Q2TBF2 565 aa9.81□□□□□ -0.84
VPS41-201ENST00000265745 PPP6R3Q5H9R7 873 aaPredicted RBP9.81□□□□□ -0.84
VPS41-201ENST00000265745 FIGNQ5HY92 759 aa9.81□□□□□ -0.84
VPS41-201ENST00000265745 ZCCHC8Q6NZY4 707 aaKnown RBP9.81□□□□□ -0.84
VPS41-201ENST00000265745 BRAT1Q6PJG6 821 aa9.81□□□□□ -0.84
VPS41-201ENST00000265745 ARHGAP36Q6ZRI8 547 aa9.81□□□□□ -0.84
VPS41-201ENST00000265745 SRLQ86TD4 932 aa9.81□□□□□ -0.84
VPS41-201ENST00000265745 PDZD3Q86UT5 571 aa9.81□□□□□ -0.84
VPS41-201ENST00000265745 ZSWIM9Q86XI8 627 aa9.81□□□□□ -0.84
VPS41-201ENST00000265745 NPWQ8N729 165 aa9.81□□□□□ -0.84
VPS41-201ENST00000265745 TSEN2Q8NCE0 465 aaKnown RBP9.81□□□□□ -0.84
VPS41-201ENST00000265745 LMX1AQ8TE12 382 aa9.81□□□□□ -0.84
VPS41-201ENST00000265745 BTN2A2Q8WVV5 523 aa9.81□□□□□ -0.84
VPS41-201ENST00000265745 ZNF653Q96CK0 615 aa9.81□□□□□ -0.84
VPS41-201ENST00000265745 TBATAQ96M53 351 aa9.81□□□□□ -0.84
VPS41-201ENST00000265745 NCAPGQ9BPX3 1015 aa9.81□□□□□ -0.84
VPS41-201ENST00000265745 WRAP53Q9BUR4 548 aaKnown RBP9.81□□□□□ -0.84
VPS41-201ENST00000265745 TCEAL2Q9H3H9 227 aaPredicted RBP9.81□□□□□ -0.84
VPS41-201ENST00000265745 MRPL47Q9HD33 250 aaKnown RBP9.81□□□□□ -0.84
VPS41-201ENST00000265745 NCKIPSDQ9NZQ3 722 aa9.81□□□□□ -0.84
VPS41-201ENST00000265745 CWC15Q9P013 229 aaKnown RBP9.81□□□□□ -0.84
VPS41-201ENST00000265745 SPASTQ9UBP0 616 aa9.81□□□□□ -0.84
VPS41-201ENST00000265745 SALL4Q9UJQ4 1053 aa9.81□□□□□ -0.84
VPS41-201ENST00000265745 NOVA2Q9UNW9 492 aaKnown RBP9.81□□□□□ -0.84
VPS41-201ENST00000265745 PLXNB3Q9ULL4 1909 aa9.81□□□□□ -0.84
VPS41-201ENST00000265745 PLXNA2O75051 1894 aa9.81□□□□□ -0.84
VPS41-201ENST00000265745 COL5A1P20908 1838 aaPredicted RBP9.8□□□□□ -0.84
VPS41-201ENST00000265745 TMEM110-MUSTN1A8MSY1 372 aa9.8□□□□□ -0.84
VPS41-201ENST00000265745 LMO7DNF2Z398 122 aa9.8□□□□□ -0.84
VPS41-201ENST00000265745 TLX3O43711 291 aaPredicted RBP9.8□□□□□ -0.84
VPS41-201ENST00000265745 CCNYL3P0C7X3 344 aa9.8□□□□□ -0.84
VPS41-201ENST00000265745 C6P13671 934 aa9.8□□□□□ -0.84
VPS41-201ENST00000265745 IL1R2P27930 398 aa9.8□□□□□ -0.84
VPS41-201ENST00000265745 PBX1P40424 430 aa9.8□□□□□ -0.84
VPS41-201ENST00000265745 EIF2S3P41091 472 aaKnown RBP9.8□□□□□ -0.84
VPS41-201ENST00000265745 LIG3P49916 1009 aa9.8□□□□□ -0.84
VPS41-201ENST00000265745 PEX5P50542 639 aa9.8□□□□□ -0.84
VPS41-201ENST00000265745 IL10RBQ08334 325 aa9.8□□□□□ -0.84
VPS41-201ENST00000265745 RFTN1Q14699 578 aaPredicted RBP9.8□□□□□ -0.84
VPS41-201ENST00000265745 ACAP1Q15027 740 aa9.8□□□□□ -0.84
VPS41-201ENST00000265745 AGERQ15109 404 aa9.8□□□□□ -0.84
VPS41-201ENST00000265745 DPYSL2Q16555 572 aa9.8□□□□□ -0.84
VPS41-201ENST00000265745 DEFB133Q30KQ1 61 aa9.8□□□□□ -0.84
VPS41-201ENST00000265745 BOLA3Q53S33 107 aa9.8□□□□□ -0.84
VPS41-201ENST00000265745 PRRT3Q5FWE3 981 aa9.8□□□□□ -0.84
VPS41-201ENST00000265745 HGSNATQ68CP4 663 aa9.8□□□□□ -0.84
VPS41-201ENST00000265745 ERAP2Q6P179 960 aa9.8□□□□□ -0.84
VPS41-201ENST00000265745 MACC1Q6ZN28 852 aa9.8□□□□□ -0.84
VPS41-201ENST00000265745 TP53INP2Q8IXH6 220 aa9.8□□□□□ -0.84
VPS41-201ENST00000265745 PHACTR4Q8IZ21 702 aa9.8□□□□□ -0.84
VPS41-201ENST00000265745 RBFAQ8N0V3 343 aa9.8□□□□□ -0.84
VPS41-201ENST00000265745 LZTR1Q8N653 840 aa9.8□□□□□ -0.84
VPS41-201ENST00000265745 SYN2Q92777 582 aaPredicted RBP9.8□□□□□ -0.84
VPS41-201ENST00000265745 FGF11Q92914 225 aa9.8□□□□□ -0.84
VPS41-201ENST00000265745 ECHDC3Q96DC8 303 aa9.8□□□□□ -0.84
VPS41-201ENST00000265745 TRIM11Q96F44 468 aa9.8□□□□□ -0.84
VPS41-201ENST00000265745 NSMCE3Q96MG7 304 aa9.8□□□□□ -0.84
VPS41-201ENST00000265745 IL12RB2Q99665 862 aa9.8□□□□□ -0.84
VPS41-201ENST00000265745 BOCQ9BWV1 1114 aa9.8□□□□□ -0.84
VPS41-201ENST00000265745 SLC13A1Q9BZW2 595 aa9.8□□□□□ -0.84
VPS41-201ENST00000265745 ABCG4Q9H172 646 aa9.8□□□□□ -0.84
VPS41-201ENST00000265745 CBX8Q9HC52 389 aa9.8□□□□□ -0.84
VPS41-201ENST00000265745 EVA1BQ9NVM1 165 aa9.8□□□□□ -0.84
VPS41-201ENST00000265745 MYO1AQ9UBC5 1043 aa9.8□□□□□ -0.84
VPS41-201ENST00000265745 ATP8A1Q9Y2Q0 1164 aa9.8□□□□□ -0.84
VPS41-201ENST00000265745 COQ6Q9Y2Z9 468 aa9.8□□□□□ -0.84
VPS41-201ENST00000265745 PCDHB1Q9Y5F3 818 aa9.8□□□□□ -0.84
VPS41-201ENST00000265745 BZW2Q9Y6E2 419 aaKnown RBP9.8□□□□□ -0.84
VPS41-201ENST00000265745 SCINQ9Y6U3 715 aa9.8□□□□□ -0.84
VPS41-201ENST00000265745 A0A1W2PQJ5 194 aa9.79□□□□□ -0.84
VPS41-201ENST00000265745 CPED1A4D0V7 1026 aa9.79□□□□□ -0.84
VPS41-201ENST00000265745 EME2A4GXA9 379 aaPredicted RBP9.79□□□□□ -0.84
VPS41-201ENST00000265745 CFAP69A5D8W1 941 aa9.79□□□□□ -0.84
VPS41-201ENST00000265745 DFFAO00273 331 aa9.79□□□□□ -0.84
VPS41-201ENST00000265745 TRAFD1O14545 582 aaPredicted RBP9.79□□□□□ -0.84
VPS41-201ENST00000265745 MUSKO15146 869 aa9.79□□□□□ -0.84
VPS41-201ENST00000265745 YY2O15391 372 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms