RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 SERHL2Q9H4I8 314 aa10.81□□□□□ -0.68
CD44-201ENST00000263398 FAM124BQ9H5Z6 455 aaPredicted RBP10.81□□□□□ -0.68
CD44-201ENST00000263398 WDR55Q9H6Y2 383 aaPredicted RBP10.81□□□□□ -0.68
CD44-201ENST00000263398 CAB39LQ9H9S4 337 aa10.81□□□□□ -0.68
CD44-201ENST00000263398 SERHLQ9NQF3 203 aa10.81□□□□□ -0.68
CD44-201ENST00000263398 SPG21Q9NZD8 308 aa10.81□□□□□ -0.68
CD44-201ENST00000263398 TBC1D30Q9Y2I9 924 aa10.81□□□□□ -0.68
CD44-201ENST00000263398 SF3B1O75533 1304 aaKnown RBP eCLIP10.81□□□□□ -0.688e-6■■■■■ 107
CD44-201ENST00000263398 PIPSLA2A3N6 862 aa10.81□□□□□ -0.68
CD44-201ENST00000263398 FFAR3O14843 346 aa10.81□□□□□ -0.68
CD44-201ENST00000263398 LIN7AO14910 233 aaPredicted RBP10.81□□□□□ -0.68
CD44-201ENST00000263398 GPR42O15529 346 aa10.81□□□□□ -0.68
CD44-201ENST00000263398 MAGEC1O60732 1142 aa10.81□□□□□ -0.68
CD44-201ENST00000263398 CES1P23141 567 aa10.81□□□□□ -0.68
CD44-201ENST00000263398 EIF2B2P49770 351 aaKnown RBP10.81□□□□□ -0.68
CD44-201ENST00000263398 RPL38P63173 70 aaKnown RBP10.81□□□□□ -0.68
CD44-201ENST00000263398 RFX4Q33E94 735 aa10.81□□□□□ -0.68
CD44-201ENST00000263398 PPP1R15BQ5SWA1 713 aa10.81□□□□□ -0.68
CD44-201ENST00000263398 ZNF618Q5T7W0 954 aa10.81□□□□□ -0.68
CD44-201ENST00000263398 HDDC2Q7Z4H3 204 aa10.81□□□□□ -0.68
CD44-201ENST00000263398 SPATA6LQ8N4H0 392 aa10.81□□□□□ -0.68
CD44-201ENST00000263398 OR4L1Q8NH43 312 aa10.81□□□□□ -0.68
CD44-201ENST00000263398 SPOCK2Q92563 424 aa10.81□□□□□ -0.68
CD44-201ENST00000263398 NACC2Q96BF6 587 aa10.81□□□□□ -0.68
CD44-201ENST00000263398 GPR20Q99678 358 aa10.81□□□□□ -0.68
CD44-201ENST00000263398 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.81□□□□□ -0.68
CD44-201ENST00000263398 NXF3Q9H4D5 531 aaKnown RBP10.81□□□□□ -0.68
CD44-201ENST00000263398 ZFP14Q9HCL3 533 aa10.81□□□□□ -0.68
CD44-201ENST00000263398 PRKAG3Q9UGI9 489 aa10.81□□□□□ -0.68
CD44-201ENST00000263398 ST3GAL5Q9UNP4 418 aa10.81□□□□□ -0.68
CD44-201ENST00000263398 CHKBQ9Y259 395 aa10.81□□□□□ -0.68
CD44-201ENST00000263398 COQ4Q9Y3A0 265 aa10.81□□□□□ -0.68
CD44-201ENST00000263398 EFCAB10A6NFE3 127 aa10.81□□□□□ -0.68
CD44-201ENST00000263398 DNM1LO00429 736 aa10.81□□□□□ -0.68
CD44-201ENST00000263398 GUCY1B2O75343 617 aa10.81□□□□□ -0.68
CD44-201ENST00000263398 CNPP09543 421 aaKnown RBP10.81□□□□□ -0.68
CD44-201ENST00000263398 CSH1P0DML2 217 aa10.81□□□□□ -0.68
CD44-201ENST00000263398 CSH2P0DML3 217 aa10.81□□□□□ -0.68
CD44-201ENST00000263398 KLRC2P26717 231 aa10.81□□□□□ -0.68
CD44-201ENST00000263398 NOS3P29474 1203 aa10.81□□□□□ -0.68
CD44-201ENST00000263398 ASTE1Q2TB18 679 aaPredicted RBP10.81□□□□□ -0.68
CD44-201ENST00000263398 DCLRE1AQ6PJP8 1040 aa10.81□□□□□ -0.68
CD44-201ENST00000263398 SCIMPQ6UWF3 145 aa10.81□□□□□ -0.68
CD44-201ENST00000263398 CUZD1Q86UP6 607 aa10.81□□□□□ -0.68
CD44-201ENST00000263398 GPR180Q86V85 440 aa10.81□□□□□ -0.68
CD44-201ENST00000263398 MTFMTQ96DP5 389 aaKnown RBP10.81□□□□□ -0.68
CD44-201ENST00000263398 HOPXQ9BPY8 73 aaPredicted RBP10.81□□□□□ -0.68
CD44-201ENST00000263398 TM6SF2Q9BZW4 377 aa10.81□□□□□ -0.68
CD44-201ENST00000263398 GRHL1Q9NZI5 618 aa10.81□□□□□ -0.68
CD44-201ENST00000263398 BBIP1A8MTZ0 92 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 SLC28A1O00337 649 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 SGTAO43765 313 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 POLD2P49005 469 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 TMC5Q6UXY8 1006 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 TRAPPC5Q8IUR0 188 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 C1orf127Q8N9H9 656 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 NETO2Q8NC67 525 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 CD101Q93033 1021 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 DEPDC7Q96QD5 511 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 CCDC3Q9BQI4 270 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 CCDC28BQ9BUN5 200 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 MAF1Q9H063 256 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 ATP13A3Q9H7F0 1226 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 CLK4Q9HAZ1 481 aaKnown RBP10.8□□□□□ -0.68
CD44-201ENST00000263398 TDRKHQ9Y2W6 561 aaKnown RBP10.8□□□□□ -0.68
CD44-201ENST00000263398 GMPPBQ9Y5P6 360 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 COL1A2P08123 1366 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 ANKDD1BA6NHY2 528 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 TULP2O00295 520 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 PQBP1O60828 265 aaKnown RBP10.8□□□□□ -0.68
CD44-201ENST00000263398 ARL2P36404 184 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 PTPN9P43378 593 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 HIRAP54198 1017 aaPredicted RBP10.8□□□□□ -0.68
CD44-201ENST00000263398 USP46P62068 366 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 ITGADQ13349 1161 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 TRIM71Q2Q1W2 868 aaKnown RBP10.8□□□□□ -0.68
CD44-201ENST00000263398 NOMO2Q5JPE7 1267 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 FNBP1LQ5T0N5 605 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 CDC73Q6P1J9 531 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 KBTBD2Q8IY47 623 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 KLRG1Q96E93 195 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 OLFM1Q99784 485 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 S100A14Q9HCY8 104 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 RAD18Q9NS91 495 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 FAM105AQ9NUU6 356 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 RIPK3Q9Y572 518 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 DISP2A7MBM2 1401 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 PLIN4Q96Q06 1357 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 CDC42P60953 191 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 PRKCQQ04759 706 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 SGCGQ13326 291 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 CYP1B1Q16678 543 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 MFSD4BQ5TF39 518 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 METTL3Q86U44 580 aaKnown RBP10.8□□□□□ -0.68
CD44-201ENST00000263398 AMIGO3Q86WK7 504 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 ENKURQ8TC29 256 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 ELMO1Q92556 727 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 DGCR14Q96DF8 476 aaKnown RBP10.8□□□□□ -0.68
CD44-201ENST00000263398 C19orf60Q96EN9 201 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 SDCBP2Q9H190 292 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms