RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 RNPEPQ9H4A4 650 aa19.24■□□□□ 0.67
UPF1-201ENST00000262803 ALG9Q9H6U8 611 aa19.24■□□□□ 0.67
UPF1-201ENST00000262803 CLDN11O75508 207 aa19.24■□□□□ 0.67
UPF1-201ENST00000262803 SERPINB7O75635 380 aa19.24■□□□□ 0.67
UPF1-201ENST00000262803 ACTR3P61158 418 aa19.24■□□□□ 0.67
UPF1-201ENST00000262803 PPIDQ08752 370 aaKnown RBP19.24■□□□□ 0.67
UPF1-201ENST00000262803 RFTN2Q52LD8 501 aaPredicted RBP19.24■□□□□ 0.67
UPF1-201ENST00000262803 CAMK1DQ8IU85 385 aa19.24■□□□□ 0.67
UPF1-201ENST00000262803 EBNA1BP2Q99848 306 aaKnown RBP19.24■□□□□ 0.67
UPF1-201ENST00000262803 C3orf14Q9HBI5 128 aa19.24■□□□□ 0.67
UPF1-201ENST00000262803 ALOX15BO15296 676 aa19.23■□□□□ 0.67
UPF1-201ENST00000262803 ENTPD5O75356 428 aa19.23■□□□□ 0.67
UPF1-201ENST00000262803 ULK1O75385 1050 aa19.23■□□□□ 0.67
UPF1-201ENST00000262803 SLC25A12O75746 678 aa19.23■□□□□ 0.67
UPF1-201ENST00000262803 LDOC1O95751 146 aaPredicted RBP19.23■□□□□ 0.67
UPF1-201ENST00000262803 NFKB1P19838 968 aa19.23■□□□□ 0.67
UPF1-201ENST00000262803 MATKP42679 507 aa19.23■□□□□ 0.67
UPF1-201ENST00000262803 UGCGQ16739 394 aa19.23■□□□□ 0.67
UPF1-201ENST00000262803 AP5B1Q2VPB7 878 aa19.23■□□□□ 0.67
UPF1-201ENST00000262803 NDUFAF6Q330K2 333 aa19.23■□□□□ 0.67
UPF1-201ENST00000262803 CXCL17Q6UXB2 119 aa19.23■□□□□ 0.67
UPF1-201ENST00000262803 IRGQQ8WZA9 623 aa19.23■□□□□ 0.67
UPF1-201ENST00000262803 TBCDQ9BTW9 1192 aa19.23■□□□□ 0.67
UPF1-201ENST00000262803 TRMOQ9BU70 441 aa19.23■□□□□ 0.67
UPF1-201ENST00000262803 IKZF4Q9H2S9 585 aa19.23■□□□□ 0.67
UPF1-201ENST00000262803 APODP05090 189 aa19.23■□□□□ 0.67
UPF1-201ENST00000262803 GLUD2P49448 558 aa19.23■□□□□ 0.67
UPF1-201ENST00000262803 DUSP16Q9BY84 665 aa19.23■□□□□ 0.67
UPF1-201ENST00000262803 PIGUQ9H490 435 aa19.23■□□□□ 0.67
UPF1-201ENST00000262803 OR10H1Q9Y4A9 318 aa19.23■□□□□ 0.67
UPF1-201ENST00000262803 GPSM3Q9Y4H4 160 aa19.23■□□□□ 0.67
UPF1-201ENST00000262803 PAX7P23759 505 aa19.23■□□□□ 0.67
UPF1-201ENST00000262803 FLT3P36888 993 aa19.23■□□□□ 0.67
UPF1-201ENST00000262803 MRPS5P82675 430 aaKnown RBP19.23■□□□□ 0.67
UPF1-201ENST00000262803 TUSC3Q13454 348 aa19.23■□□□□ 0.67
UPF1-201ENST00000262803 MPPE1Q53F39 396 aa19.23■□□□□ 0.67
UPF1-201ENST00000262803 NET1Q7Z628 596 aaPredicted RBP19.23■□□□□ 0.67
UPF1-201ENST00000262803 FBXO22Q8NEZ5 403 aa19.23■□□□□ 0.67
UPF1-201ENST00000262803 MFSD14AQ96MC6 490 aa19.23■□□□□ 0.67
UPF1-201ENST00000262803 SMAD5Q99717 465 aaKnown RBP19.23■□□□□ 0.67
UPF1-201ENST00000262803 KLHL25Q9H0H3 589 aa19.23■□□□□ 0.67
UPF1-201ENST00000262803 AASDHPPTQ9NRN7 309 aa19.23■□□□□ 0.67
UPF1-201ENST00000262803 IL6P05231 212 aa19.23■□□□□ 0.67
UPF1-201ENST00000262803 S100GP29377 79 aa19.23■□□□□ 0.67
UPF1-201ENST00000262803 BNC1Q01954 994 aa19.23■□□□□ 0.67
UPF1-201ENST00000262803 NDUFA5Q16718 116 aa19.23■□□□□ 0.67
UPF1-201ENST00000262803 RFX4Q33E94 735 aa19.23■□□□□ 0.67
UPF1-201ENST00000262803 HGSNATQ68CP4 663 aa19.23■□□□□ 0.67
UPF1-201ENST00000262803 TRIM40Q6P9F5 258 aa19.23■□□□□ 0.67
UPF1-201ENST00000262803 SLC41A1Q8IVJ1 513 aa19.23■□□□□ 0.67
UPF1-201ENST00000262803 PTCD3Q96EY7 689 aaKnown RBP19.23■□□□□ 0.67
UPF1-201ENST00000262803 SEMA4BQ9NPR2 832 aaPredicted RBP19.23■□□□□ 0.67
UPF1-201ENST00000262803 SUCOQ9UBS9 1254 aaKnown RBP19.23■□□□□ 0.67
UPF1-201ENST00000262803 AGO1Q9UL18 857 aaKnown RBP19.23■□□□□ 0.67
UPF1-201ENST00000262803 PFKPQ01813 784 aa19.22■□□□□ 0.67
UPF1-201ENST00000262803 SPIRE1Q08AE8 756 aa19.22■□□□□ 0.67
UPF1-201ENST00000262803 FAM180AQ6UWF9 173 aa19.22■□□□□ 0.67
UPF1-201ENST00000262803 TRABD2AQ86V40 505 aa19.22■□□□□ 0.67
UPF1-201ENST00000262803 C8orf59Q8N0T1 100 aaPredicted RBP19.22■□□□□ 0.67
UPF1-201ENST00000262803 PTCD2Q8WV60 388 aaKnown RBP19.22■□□□□ 0.67
UPF1-201ENST00000262803 ZNF607Q96SK3 696 aa19.22■□□□□ 0.67
UPF1-201ENST00000262803 EXO5Q9H790 373 aa19.22■□□□□ 0.67
UPF1-201ENST00000262803 CLN6Q9NWW5 311 aa19.22■□□□□ 0.67
UPF1-201ENST00000262803 CRNNQ9UBG3 495 aaPredicted RBP19.22■□□□□ 0.67
UPF1-201ENST00000262803 PCDHB1Q9Y5F3 818 aa19.22■□□□□ 0.67
UPF1-201ENST00000262803 CCDC166P0CW27 439 aa19.22■□□□□ 0.67
UPF1-201ENST00000262803 PTDSS1P48651 473 aaKnown RBP19.22■□□□□ 0.67
UPF1-201ENST00000262803 RAB10P61026 200 aa19.22■□□□□ 0.67
UPF1-201ENST00000262803 PTSQ03393 145 aa19.22■□□□□ 0.67
UPF1-201ENST00000262803 PFKFB4Q16877 469 aa19.22■□□□□ 0.67
UPF1-201ENST00000262803 PACS1Q6VY07 963 aa19.22■□□□□ 0.67
UPF1-201ENST00000262803 RASGEF1CQ8N431 466 aa19.22■□□□□ 0.67
UPF1-201ENST00000262803 FAM84AQ96KN4 292 aa19.22■□□□□ 0.67
UPF1-201ENST00000262803 PCDHB18PQ96TA0 734 aa19.22■□□□□ 0.67
UPF1-201ENST00000262803 ERVK-5Q9HDB9 667 aa19.22■□□□□ 0.67
UPF1-201ENST00000262803 NFATC1O95644 943 aa19.22■□□□□ 0.67
UPF1-201ENST00000262803 TRAF3Q13114 568 aa19.22■□□□□ 0.67
UPF1-201ENST00000262803 SPANXN2Q5MJ10 180 aa19.22■□□□□ 0.67
UPF1-201ENST00000262803 MBOAT7Q96N66 472 aa19.22■□□□□ 0.67
UPF1-201ENST00000262803 TTPALQ9BTX7 342 aa19.22■□□□□ 0.67
UPF1-201ENST00000262803 LRMDAQ9H2I8 198 aa19.22■□□□□ 0.67
UPF1-201ENST00000262803 OR6B1O95007 311 aa19.22■□□□□ 0.67
UPF1-201ENST00000262803 PARP15Q460N3 678 aa19.22■□□□□ 0.67
UPF1-201ENST00000262803 NOL9Q5SY16 702 aaKnown RBP19.22■□□□□ 0.67
UPF1-201ENST00000262803 TTC7BQ86TV6 843 aa19.22■□□□□ 0.67
UPF1-201ENST00000262803 EFCAB3Q8N7B9 438 aa19.22■□□□□ 0.67
UPF1-201ENST00000262803 PTGR2Q8N8N7 351 aaPredicted RBP19.22■□□□□ 0.67
UPF1-201ENST00000262803 RTL3Q8N8U3 475 aaKnown RBP19.22■□□□□ 0.67
UPF1-201ENST00000262803 MYDGFQ969H8 173 aa19.22■□□□□ 0.67
UPF1-201ENST00000262803 MIEF2Q96C03 454 aa19.22■□□□□ 0.67
UPF1-201ENST00000262803 KREMEN1Q96MU8 473 aa19.22■□□□□ 0.67
UPF1-201ENST00000262803 PHPT1Q9NRX4 125 aaPredicted RBP19.22■□□□□ 0.67
UPF1-201ENST00000262803 TRPS1Q9UHF7 1281 aa19.22■□□□□ 0.67
UPF1-201ENST00000262803 ZMPSTE24O75844 475 aa19.21■□□□□ 0.67
UPF1-201ENST00000262803 ITGAXP20702 1163 aa19.21■□□□□ 0.67
UPF1-201ENST00000262803 CYP3A5P20815 502 aa19.21■□□□□ 0.67
UPF1-201ENST00000262803 FAM110CQ1W6H9 321 aa19.21■□□□□ 0.67
UPF1-201ENST00000262803 ISLR2Q6UXK2 745 aa19.21■□□□□ 0.67
UPF1-201ENST00000262803 GPRIN3Q6ZVF9 776 aa19.21■□□□□ 0.67
UPF1-201ENST00000262803 DENND1CQ8IV53 801 aa19.21■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms