RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 PIK3R6Q5UE93 754 aa21.44■■□□□ 1.02
TRIM28-201ENST00000253024 SPPL2BQ8TCT7 592 aa21.44■■□□□ 1.02
TRIM28-201ENST00000253024 LIN28AQ9H9Z2 209 aaKnown RBP21.44■■□□□ 1.02
TRIM28-201ENST00000253024 NOD1Q9Y239 953 aa21.44■■□□□ 1.02
TRIM28-201ENST00000253024 ZSWIM8A7E2V4 1837 aa21.44■■□□□ 1.02
TRIM28-201ENST00000253024 A0A1B0GTL3 188 aa21.44■■□□□ 1.02
TRIM28-201ENST00000253024 MATN3O15232 486 aa21.44■■□□□ 1.02
TRIM28-201ENST00000253024 SNUPNO95149 360 aaKnown RBP21.44■■□□□ 1.02
TRIM28-201ENST00000253024 PBX3P40426 434 aa21.44■■□□□ 1.02
TRIM28-201ENST00000253024 ZNF280BQ86YH2 543 aa21.44■■□□□ 1.02
TRIM28-201ENST00000253024 OR13C4Q8NGS5 318 aa21.44■■□□□ 1.02
TRIM28-201ENST00000253024 CEP70Q8NHQ1 597 aa21.44■■□□□ 1.02
TRIM28-201ENST00000253024 LPGAT1Q92604 370 aa21.44■■□□□ 1.02
TRIM28-201ENST00000253024 ZNF512Q96ME7 567 aaPredicted RBP21.44■■□□□ 1.02
TRIM28-201ENST00000253024 HBEGFQ99075 208 aa21.44■■□□□ 1.02
TRIM28-201ENST00000253024 NOL11Q9H8H0 719 aaKnown RBP21.44■■□□□ 1.02
TRIM28-201ENST00000253024 DNAJB4Q9UDY4 337 aa21.44■■□□□ 1.02
TRIM28-201ENST00000253024 NR5A2O00482 541 aa21.43■■□□□ 1.02
TRIM28-201ENST00000253024 RAB27AP51159 221 aa21.43■■□□□ 1.02
TRIM28-201ENST00000253024 ADGRE1Q14246 886 aa21.43■■□□□ 1.02
TRIM28-201ENST00000253024 OGFRL1Q5TC84 451 aaPredicted RBP21.43■■□□□ 1.02
TRIM28-201ENST00000253024 HECTD2Q5U5R9 776 aa21.43■■□□□ 1.02
TRIM28-201ENST00000253024 METTL21CQ5VZV1 264 aa21.43■■□□□ 1.02
TRIM28-201ENST00000253024 METTL25Q8N6Q8 603 aa21.43■■□□□ 1.02
TRIM28-201ENST00000253024 MYEOVQ96EZ4 313 aa21.43■■□□□ 1.02
TRIM28-201ENST00000253024 MPP4Q96JB8 637 aa21.43■■□□□ 1.02
TRIM28-201ENST00000253024 TRAPPC9Q96Q05 1148 aa21.43■■□□□ 1.02
TRIM28-201ENST00000253024 VAT1Q99536 393 aa21.43■■□□□ 1.02
TRIM28-201ENST00000253024 SP110Q9HB58 689 aa21.43■■□□□ 1.02
TRIM28-201ENST00000253024 PSMD12O00232 456 aaPredicted RBP21.43■■□□□ 1.02
TRIM28-201ENST00000253024 FBP2O00757 339 aa21.43■■□□□ 1.02
TRIM28-201ENST00000253024 CLPTM1O96005 669 aa21.43■■□□□ 1.02
TRIM28-201ENST00000253024 COG7P83436 770 aa21.43■■□□□ 1.02
TRIM28-201ENST00000253024 SLC5A9Q2M3M2 681 aa21.43■■□□□ 1.02
TRIM28-201ENST00000253024 PGAM4Q8N0Y7 254 aa21.43■■□□□ 1.02
TRIM28-201ENST00000253024 FCRL5Q96RD9 977 aa21.43■■□□□ 1.02
TRIM28-201ENST00000253024 COQ10BQ9H8M1 238 aa21.43■■□□□ 1.02
TRIM28-201ENST00000253024 SAC3D1A6NKF1 404 aa21.42■■□□□ 1.02
TRIM28-201ENST00000253024 TADA2AO75478 443 aa21.42■■□□□ 1.02
TRIM28-201ENST00000253024 CCNCP24863 283 aa21.42■■□□□ 1.02
TRIM28-201ENST00000253024 SLC7A2P52569 658 aa21.42■■□□□ 1.02
TRIM28-201ENST00000253024 HNRNPDQ14103 355 aaKnown RBP21.42■■□□□ 1.02
TRIM28-201ENST00000253024 UGP2Q16851 508 aa21.42■■□□□ 1.02
TRIM28-201ENST00000253024 PFKFB4Q16877 469 aa21.42■■□□□ 1.02
TRIM28-201ENST00000253024 NADK2Q4G0N4 442 aa21.42■■□□□ 1.02
TRIM28-201ENST00000253024 KLHDC9Q8NEP7 349 aa21.42■■□□□ 1.02
TRIM28-201ENST00000253024 NUDT8Q8WV74 236 aa21.42■■□□□ 1.02
TRIM28-201ENST00000253024 RIMS3Q9UJD0 308 aa21.42■■□□□ 1.02
TRIM28-201ENST00000253024 HAS3O00219 553 aa21.42■■□□□ 1.02
TRIM28-201ENST00000253024 ATP5F1P24539 256 aaPredicted RBP21.42■■□□□ 1.02
TRIM28-201ENST00000253024 ACVRL1P37023 503 aa21.42■■□□□ 1.02
TRIM28-201ENST00000253024 HCAR3P49019 387 aa21.42■■□□□ 1.02
TRIM28-201ENST00000253024 GEMP55040 296 aa21.42■■□□□ 1.02
TRIM28-201ENST00000253024 INHBEP58166 350 aa21.42■■□□□ 1.02
TRIM28-201ENST00000253024 MYBPC1Q00872 1141 aa21.42■■□□□ 1.02
TRIM28-201ENST00000253024 SPRYD7Q5W111 196 aa21.42■■□□□ 1.02
TRIM28-201ENST00000253024 TMEM86AQ8N2M4 240 aa21.42■■□□□ 1.02
TRIM28-201ENST00000253024 DPF3Q92784 378 aa21.42■■□□□ 1.02
TRIM28-201ENST00000253024 NOL6Q9H6R4 1146 aaKnown RBP21.42■■□□□ 1.02
TRIM28-201ENST00000253024 MID2Q9UJV3 735 aa21.42■■□□□ 1.02
TRIM28-201ENST00000253024 ANKRD6Q9Y2G4 727 aa21.42■■□□□ 1.02
TRIM28-201ENST00000253024 UBXN8O00124 270 aa21.42■■□□□ 1.02
TRIM28-201ENST00000253024 CDH15P55291 814 aa21.42■■□□□ 1.02
TRIM28-201ENST00000253024 RBBP5Q15291 538 aaKnown RBP21.42■■□□□ 1.02
TRIM28-201ENST00000253024 VPS26BQ4G0F5 336 aa21.42■■□□□ 1.02
TRIM28-201ENST00000253024 ARMC3Q5W041 872 aa21.42■■□□□ 1.02
TRIM28-201ENST00000253024 REP15Q6BDI9 236 aa21.42■■□□□ 1.02
TRIM28-201ENST00000253024 SLC29A1Q99808 456 aa21.42■■□□□ 1.02
TRIM28-201ENST00000253024 MRPL57Q9BQC6 102 aaKnown RBP21.42■■□□□ 1.02
TRIM28-201ENST00000253024 HCSTQ9UBK5 93 aa21.42■■□□□ 1.02
TRIM28-201ENST00000253024 TIMM22Q9Y584 194 aa21.42■■□□□ 1.02
TRIM28-201ENST00000253024 PCDHGA7Q9Y5G6 932 aa21.42■■□□□ 1.02
TRIM28-201ENST00000253024 PTCH2Q9Y6C5 1203 aa21.42■■□□□ 1.02
TRIM28-201ENST00000253024 PDLIM1O00151 329 aa21.41■■□□□ 1.02
TRIM28-201ENST00000253024 IPO13O94829 963 aaKnown RBP21.41■■□□□ 1.02
TRIM28-201ENST00000253024 CLIC3O95833 236 aa21.41■■□□□ 1.02
TRIM28-201ENST00000253024 APOA4P06727 396 aa21.41■■□□□ 1.02
TRIM28-201ENST00000253024 OR13J1Q8NGT2 312 aa21.41■■□□□ 1.02
TRIM28-201ENST00000253024 PTERQ96BW5 349 aa21.41■■□□□ 1.02
TRIM28-201ENST00000253024 CATSPERBQ9H7T0 1116 aa21.41■■□□□ 1.02
TRIM28-201ENST00000253024 CAAP1Q9H8G2 361 aa21.41■■□□□ 1.02
TRIM28-201ENST00000253024 TRMT13Q9NUP7 481 aaKnown RBP21.41■■□□□ 1.02
TRIM28-201ENST00000253024 TRPV2Q9Y5S1 764 aa21.41■■□□□ 1.02
TRIM28-201ENST00000253024 PDCD11Q14690 1871 aaKnown RBP21.41■■□□□ 1.02
TRIM28-201ENST00000253024 TNPO2O14787 897 aaKnown RBP21.41■■□□□ 1.02
TRIM28-201ENST00000253024 GPR39O43194 453 aa21.41■■□□□ 1.02
TRIM28-201ENST00000253024 SMIM18P0DKX4 95 aa21.41■■□□□ 1.02
TRIM28-201ENST00000253024 PSMC3P17980 439 aa21.41■■□□□ 1.02
TRIM28-201ENST00000253024 PAMP19021 973 aa21.41■■□□□ 1.02
TRIM28-201ENST00000253024 GRIA3P42263 894 aa21.41■■□□□ 1.02
TRIM28-201ENST00000253024 OR1G1P47890 313 aa21.41■■□□□ 1.02
TRIM28-201ENST00000253024 APLP1P51693 650 aa21.41■■□□□ 1.02
TRIM28-201ENST00000253024 FUT11Q495W5 492 aa21.41■■□□□ 1.02
TRIM28-201ENST00000253024 RANBP10Q6VN20 620 aa21.41■■□□□ 1.02
TRIM28-201ENST00000253024 ADGRG6Q86SQ4 1221 aa21.41■■□□□ 1.02
TRIM28-201ENST00000253024 ZBTB46Q86UZ6 589 aa21.41■■□□□ 1.02
TRIM28-201ENST00000253024 C2CD4AQ8NCU7 369 aaPredicted RBP21.41■■□□□ 1.02
TRIM28-201ENST00000253024 UBE2OQ9C0C9 1292 aaKnown RBP21.41■■□□□ 1.02
TRIM28-201ENST00000253024 ARHGAP39Q9C0H5 1083 aa21.41■■□□□ 1.02
TRIM28-201ENST00000253024 UTP6Q9NYH9 597 aaKnown RBP21.41■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms