RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 CEP350Q5VT06 3117 aa24.08■■□□□ 1.45
CLN3-264ENST00000637985 NLRP13Q86W25 1043 aa24.08■■□□□ 1.45
CLN3-264ENST00000637985 ARHGEF28Q8N1W1 1705 aaKnown RBP24.07■■□□□ 1.44
CLN3-264ENST00000637985 TXNRD1Q16881 649 aa24.07■■□□□ 1.44
CLN3-264ENST00000637985 MARCH10Q8NA82 808 aaPredicted RBP24.06■■□□□ 1.44
CLN3-264ENST00000637985 AATKQ6ZMQ8 1374 aa24.03■■□□□ 1.44
CLN3-264ENST00000637985 MAP3K5Q99683 1374 aa24.03■■□□□ 1.44
CLN3-264ENST00000637985 KDM2AQ9Y2K7 1162 aa24.03■■□□□ 1.44
CLN3-264ENST00000637985 ARXQ96QS3 562 aa24.02■■□□□ 1.44
CLN3-264ENST00000637985 GIGYF1O75420 1035 aaPredicted RBP24.01■■□□□ 1.43
CLN3-264ENST00000637985 TOM1L2Q6ZVM7 507 aa24.01■■□□□ 1.43
CLN3-264ENST00000637985 DCAF11Q8TEB1 546 aa24.01■■□□□ 1.43
CLN3-264ENST00000637985 CDCA7Q9BWT1 371 aaPredicted RBP24■■□□□ 1.43
CLN3-264ENST00000637985 AKAP12Q02952 1782 aa23.99■■□□□ 1.43
CLN3-264ENST00000637985 WNK3Q9BYP7 1800 aa23.99■■□□□ 1.43
CLN3-264ENST00000637985 STAC3Q96MF2 364 aa23.99■■□□□ 1.43
CLN3-264ENST00000637985 COL18A1P39060 1754 aa23.96■■□□□ 1.43
CLN3-264ENST00000637985 GOLGB1Q14789 3259 aaKnown RBP23.96■■□□□ 1.43
CLN3-264ENST00000637985 WDR17Q8IZU2 1322 aa23.96■■□□□ 1.43
CLN3-264ENST00000637985 ZBTB7CA1YPR0 619 aa23.96■■□□□ 1.43
CLN3-264ENST00000637985 GPR162Q16538 588 aa23.96■■□□□ 1.43
CLN3-264ENST00000637985 BRD4O60885 1362 aaPredicted RBP23.95■■□□□ 1.42
CLN3-264ENST00000637985 AXIN2Q9Y2T1 843 aa23.95■■□□□ 1.42
CLN3-264ENST00000637985 SLIT3O75094 1523 aa23.94■■□□□ 1.42
CLN3-264ENST00000637985 NLRP6P59044 892 aa23.92■■□□□ 1.42
CLN3-264ENST00000637985 PPIP5K1Q6PFW1 1433 aa23.92■■□□□ 1.42
CLN3-264ENST00000637985 PAPPAQ13219 1627 aa23.91■■□□□ 1.42
CLN3-264ENST00000637985 EXOC5O00471 708 aa23.9■■□□□ 1.42
CLN3-264ENST00000637985 CARD10Q9BWT7 1032 aa23.9■■□□□ 1.42
CLN3-264ENST00000637985 SHANK3Q9BYB0 1731 aa23.89■■□□□ 1.41
CLN3-264ENST00000637985 USP6P35125 1406 aa23.86■■□□□ 1.41
CLN3-264ENST00000637985 SRPK2P78362 688 aaKnown RBP23.86■■□□□ 1.41
CLN3-264ENST00000637985 NHSQ6T4R5 1651 aa23.86■■□□□ 1.41
CLN3-264ENST00000637985 CPSF1Q10570 1443 aaKnown RBP23.85■■□□□ 1.41
CLN3-264ENST00000637985 ZNF827Q17R98 1081 aa23.85■■□□□ 1.41
CLN3-264ENST00000637985 ARHGEF25Q86VW2 580 aa23.85■■□□□ 1.41
CLN3-264ENST00000637985 RGPD5Q99666 1765 aa23.83■■□□□ 1.41
CLN3-264ENST00000637985 CABP2Q9NPB3 220 aa23.83■■□□□ 1.41
CLN3-264ENST00000637985 TNS2Q63HR2 1409 aa23.83■■□□□ 1.4
CLN3-264ENST00000637985 CSB-PGBD3P0DP91 1061 aa23.82■■□□□ 1.4
CLN3-264ENST00000637985 PIK3C2AO00443 1686 aa23.82■■□□□ 1.4
CLN3-264ENST00000637985 COL24A1Q17RW2 1714 aa23.81■■□□□ 1.4
CLN3-264ENST00000637985 PELP1Q8IZL8 1130 aaKnown RBP23.81■■□□□ 1.4
CLN3-264ENST00000637985 SLC16A10Q8TF71 515 aa23.81■■□□□ 1.4
CLN3-264ENST00000637985 ACSBG1Q96GR2 724 aa23.81■■□□□ 1.4
CLN3-264ENST00000637985 CABP1Q9NZU7 370 aa23.81■■□□□ 1.4
CLN3-264ENST00000637985 CCDC7Q96M83 1385 aa23.8■■□□□ 1.4
CLN3-264ENST00000637985 KLHL34Q8N239 644 aa23.8■■□□□ 1.4
CLN3-264ENST00000637985 LRRC4BQ9NT99 713 aa23.8■■□□□ 1.4
CLN3-264ENST00000637985 TRPM1Q7Z4N2 1603 aa23.8■■□□□ 1.4
CLN3-264ENST00000637985 POLD1P28340 1107 aa23.79■■□□□ 1.4
CLN3-264ENST00000637985 AKT1S1Q96B36 256 aa23.78■■□□□ 1.4
CLN3-264ENST00000637985 BTAF1O14981 1849 aa23.77■■□□□ 1.4
CLN3-264ENST00000637985 KIAA1210Q9ULL0 1709 aa23.77■■□□□ 1.4
CLN3-264ENST00000637985 KCNH5Q8NCM2 988 aa23.77■■□□□ 1.4
CLN3-264ENST00000637985 NLGN2Q8NFZ4 835 aa23.77■■□□□ 1.4
CLN3-264ENST00000637985 ABCC6O95255 1503 aa23.77■■□□□ 1.4
CLN3-264ENST00000637985 QSER1Q2KHR3 1735 aa23.76■■□□□ 1.39
CLN3-264ENST00000637985 RAB3GAP2Q9H2M9 1393 aa23.75■■□□□ 1.39
CLN3-264ENST00000637985 GRIN3BO60391 1043 aa23.74■■□□□ 1.39
CLN3-264ENST00000637985 YBX3P16989 372 aaKnown RBP eCLIP23.74■■□□□ 1.39
CLN3-264ENST00000637985 CENPJQ9HC77 1338 aaPredicted RBP23.74■■□□□ 1.39
CLN3-264ENST00000637985 NBPF1Q3BBV0 1214 aa23.73■■□□□ 1.39
CLN3-264ENST00000637985 PNPLA7Q6ZV29 1317 aa23.73■■□□□ 1.39
CLN3-264ENST00000637985 QRICH2Q9H0J4 1663 aa23.73■■□□□ 1.39
CLN3-264ENST00000637985 KAT6BQ8WYB5 2073 aa23.71■■□□□ 1.39
CLN3-264ENST00000637985 ATP10DQ9P241 1426 aa23.71■■□□□ 1.39
CLN3-264ENST00000637985 SOX12O15370 315 aa23.71■■□□□ 1.39
CLN3-264ENST00000637985 NFAT5O94916 1531 aa23.7■■□□□ 1.38
CLN3-264ENST00000637985 TTC21BQ7Z4L5 1316 aa23.7■■□□□ 1.38
CLN3-264ENST00000637985 HSPA6P17066 643 aa23.7■■□□□ 1.38
CLN3-264ENST00000637985 SLC27A3Q5K4L6 730 aa23.7■■□□□ 1.38
CLN3-264ENST00000637985 IL2RBP14784 551 aa23.67■■□□□ 1.38
CLN3-264ENST00000637985 ZNF692Q9BU19 519 aaPredicted RBP23.66■■□□□ 1.38
CLN3-264ENST00000637985 TFCP2L1Q9NZI6 479 aa23.66■■□□□ 1.38
CLN3-264ENST00000637985 TUBGCP6Q96RT7 1819 aa23.66■■□□□ 1.38
CLN3-264ENST00000637985 TTC21AQ8NDW8 1320 aa23.65■■□□□ 1.38
CLN3-264ENST00000637985 GPBP1L1Q9HC44 474 aaPredicted RBP23.65■■□□□ 1.38
CLN3-264ENST00000637985 ERBB3P21860 1342 aa23.64■■□□□ 1.38
CLN3-264ENST00000637985 NLRP2Q9NX02 1062 aa23.64■■□□□ 1.37
CLN3-264ENST00000637985 ADCY9O60503 1353 aa23.61■■□□□ 1.37
CLN3-264ENST00000637985 KCNQ4P56696 695 aa23.6■■□□□ 1.37
CLN3-264ENST00000637985 EVC2Q86UK5 1308 aa23.59■■□□□ 1.37
CLN3-264ENST00000637985 LY75O60449 1722 aa23.55■■□□□ 1.36
CLN3-264ENST00000637985 COL23A1Q86Y22 540 aaPredicted RBP23.54■■□□□ 1.36
CLN3-264ENST00000637985 ANKRD24Q8TF21 1146 aa23.54■■□□□ 1.36
CLN3-264ENST00000637985 ZNF526Q8TF50 670 aaPredicted RBP23.54■■□□□ 1.36
CLN3-264ENST00000637985 CD2APQ9Y5K6 639 aa23.54■■□□□ 1.36
CLN3-264ENST00000637985 USP31Q70CQ4 1352 aa23.53■■□□□ 1.36
CLN3-264ENST00000637985 DDX54Q8TDD1 881 aaKnown RBP23.53■■□□□ 1.36
CLN3-264ENST00000637985 KTN1Q86UP2 1357 aaKnown RBP23.52■■□□□ 1.36
CLN3-264ENST00000637985 PRIM1P49642 420 aaKnown RBP23.52■■□□□ 1.36
CLN3-264ENST00000637985 LTN1O94822 1766 aa23.52■■□□□ 1.36
CLN3-264ENST00000637985 ANKRD36BQ8N2N9 1353 aa23.52■■□□□ 1.36
CLN3-264ENST00000637985 NSD2O96028 1365 aa23.51■■□□□ 1.35
CLN3-264ENST00000637985 USP54Q70EL1 1684 aa23.51■■□□□ 1.35
CLN3-264ENST00000637985 MSH5O43196 834 aa23.5■■□□□ 1.35
CLN3-264ENST00000637985 SYTL4Q96C24 671 aaPredicted RBP23.5■■□□□ 1.35
CLN3-264ENST00000637985 CCNL1Q9UK58 526 aaPredicted RBP23.5■■□□□ 1.35
CLN3-264ENST00000637985 MSL1Q68DK7 614 aa23.49■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 82.9 ms