RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 TTC21BQ7Z4L5 1316 aa27.86■■■□□ 2.05
CLN3-262ENST00000637699 ARHGEF25Q86VW2 580 aa27.85■■■□□ 2.05
CLN3-262ENST00000637699 ZNF692Q9BU19 519 aaPredicted RBP27.85■■■□□ 2.05
CLN3-262ENST00000637699 BCL11BQ9C0K0 894 aaPredicted RBP27.85■■■□□ 2.05
CLN3-262ENST00000637699 SBF2Q86WG5 1849 aa27.85■■■□□ 2.05
CLN3-262ENST00000637699 CPSF1Q10570 1443 aaKnown RBP27.84■■■□□ 2.05
CLN3-262ENST00000637699 CSB-PGBD3P0DP91 1061 aa27.84■■■□□ 2.05
CLN3-262ENST00000637699 MARCH10Q8NA82 808 aaPredicted RBP27.84■■■□□ 2.05
CLN3-262ENST00000637699 KCNH5Q8NCM2 988 aa27.84■■■□□ 2.05
CLN3-262ENST00000637699 SIN3AQ96ST3 1273 aa27.84■■■□□ 2.05
CLN3-262ENST00000637699 CDCA7Q9BWT1 371 aaPredicted RBP27.82■■■□□ 2.04
CLN3-262ENST00000637699 ANO8Q9HCE9 1232 aaPredicted RBP27.82■■■□□ 2.04
CLN3-262ENST00000637699 YY1P25490 414 aa27.81■■■□□ 2.04
CLN3-262ENST00000637699 ROCK2O75116 1388 aaKnown RBP27.81■■■□□ 2.04
CLN3-262ENST00000637699 TRPM1Q7Z4N2 1603 aa27.81■■■□□ 2.04
CLN3-262ENST00000637699 NEUROD1Q13562 356 aa27.8■■■□□ 2.04
CLN3-262ENST00000637699 CARD10Q9BWT7 1032 aa27.8■■■□□ 2.04
CLN3-262ENST00000637699 RGPD5Q99666 1765 aa27.79■■■□□ 2.04
CLN3-262ENST00000637699 RGPD3A6NKT7 1758 aaPredicted RBP27.78■■■□□ 2.04
CLN3-262ENST00000637699 RGPD4Q7Z3J3 1758 aa27.78■■■□□ 2.04
CLN3-262ENST00000637699 TTC21AQ8NDW8 1320 aa27.78■■■□□ 2.04
CLN3-262ENST00000637699 PROM2Q8N271 834 aa27.78■■■□□ 2.04
CLN3-262ENST00000637699 WNK3Q9BYP7 1800 aa27.78■■■□□ 2.04
CLN3-262ENST00000637699 AKAP12Q02952 1782 aa27.76■■■□□ 2.03
CLN3-262ENST00000637699 KTN1Q86UP2 1357 aaKnown RBP27.76■■■□□ 2.03
CLN3-262ENST00000637699 DCAF8L1A6NGE4 600 aa27.76■■■□□ 2.03
CLN3-262ENST00000637699 EXOC5O00471 708 aa27.76■■■□□ 2.03
CLN3-262ENST00000637699 PDGFDQ9GZP0 370 aaPredicted RBP27.76■■■□□ 2.03
CLN3-262ENST00000637699 NINLQ9Y2I6 1382 aa27.74■■■□□ 2.03
CLN3-262ENST00000637699 BCL9O00512 1426 aa27.74■■■□□ 2.03
CLN3-262ENST00000637699 ZBTB7AO95365 584 aa27.72■■■□□ 2.03
CLN3-262ENST00000637699 TXNRD1Q16881 649 aa27.72■■■□□ 2.03
CLN3-262ENST00000637699 SUGP2Q8IX01 1082 aaKnown RBP eCLIP27.72■■■□□ 2.03
CLN3-262ENST00000637699 NFAT5O94916 1531 aa27.72■■■□□ 2.03
CLN3-262ENST00000637699 CASZ1Q86V15 1759 aa27.7■■■□□ 2.02
CLN3-262ENST00000637699 CCDC7Q96M83 1385 aa27.7■■■□□ 2.02
CLN3-262ENST00000637699 STK32BQ9NY57 414 aa27.69■■■□□ 2.02
CLN3-262ENST00000637699 ATF5Q9Y2D1 282 aaPredicted RBP27.68■■■□□ 2.02
CLN3-262ENST00000637699 NLRP2Q9NX02 1062 aa27.66■■■□□ 2.02
CLN3-262ENST00000637699 SLC15A2Q16348 729 aa27.65■■■□□ 2.02
CLN3-262ENST00000637699 NME9Q86XW9 330 aa27.65■■■□□ 2.02
CLN3-262ENST00000637699 ACSBG1Q96GR2 724 aa27.65■■■□□ 2.02
CLN3-262ENST00000637699 TNS2Q63HR2 1409 aa27.65■■■□□ 2.02
CLN3-262ENST00000637699 TMC1Q8TDI8 760 aa27.64■■■□□ 2.02
CLN3-262ENST00000637699 MON2Q7Z3U7 1717 aa27.64■■■□□ 2.01
CLN3-262ENST00000637699 USP31Q70CQ4 1352 aa27.63■■■□□ 2.01
CLN3-262ENST00000637699 PTGER2P43116 358 aa27.63■■■□□ 2.01
CLN3-262ENST00000637699 ABCC6O95255 1503 aa27.62■■■□□ 2.01
CLN3-262ENST00000637699 ERBB3P21860 1342 aa27.62■■■□□ 2.01
CLN3-262ENST00000637699 CARD11Q9BXL7 1154 aa27.6■■■□□ 2.01
CLN3-262ENST00000637699 SBNO2Q9Y2G9 1366 aa27.6■■■□□ 2.01
CLN3-262ENST00000637699 IL2RBP14784 551 aa27.59■■■□□ 2.01
CLN3-262ENST00000637699 HDGFL2Q7Z4V5 671 aaPredicted RBP27.59■■■□□ 2.01
CLN3-262ENST00000637699 SLC12A5Q9H2X9 1139 aa27.59■■■□□ 2.01
CLN3-262ENST00000637699 MYOM1P52179 1685 aa27.59■■■□□ 2.01
CLN3-262ENST00000637699 CD163L1Q9NR16 1453 aa27.58■■■□□ 2.01
CLN3-262ENST00000637699 ANKRD24Q8TF21 1146 aa27.58■■■□□ 2.01
CLN3-262ENST00000637699 NHSQ6T4R5 1651 aa27.56■■■□□ 2
CLN3-262ENST00000637699 MTFR1LQ9H019 292 aa27.56■■■□□ 2
CLN3-262ENST00000637699 FHDC1Q9C0D6 1143 aaPredicted RBP27.55■■■□□ 2
CLN3-262ENST00000637699 LTN1O94822 1766 aa27.55■■■□□ 2
CLN3-262ENST00000637699 USP54Q70EL1 1684 aa27.53■■■□□ 2
CLN3-262ENST00000637699 SYT17Q9BSW7 474 aa27.53■■■□□ 2
CLN3-262ENST00000637699 KAT6BQ8WYB5 2073 aa27.53■■■□□ 2
CLN3-262ENST00000637699 TERF2IPQ9NYB0 399 aa27.52■■■□□ 2
CLN3-262ENST00000637699 EDC4Q6P2E9 1401 aaKnown RBP27.51■■□□□ 1.99
CLN3-262ENST00000637699 SGIP1Q9BQI5 828 aa27.5■■□□□ 1.99
CLN3-262ENST00000637699 A0A1W2PP64 1363 aa27.48■■□□□ 1.99
CLN3-262ENST00000637699 BTAF1O14981 1849 aa27.48■■□□□ 1.99
CLN3-262ENST00000637699 LTV1Q96GA3 475 aaPredicted RBP27.48■■□□□ 1.99
CLN3-262ENST00000637699 UTRNP46939 3433 aa27.48■■□□□ 1.99
CLN3-262ENST00000637699 ZNF827Q17R98 1081 aa27.47■■□□□ 1.99
CLN3-262ENST00000637699 DDX54Q8TDD1 881 aaKnown RBP27.47■■□□□ 1.99
CLN3-262ENST00000637699 LRRC4BQ9NT99 713 aa27.47■■□□□ 1.99
CLN3-262ENST00000637699 IP6K1Q92551 441 aa27.46■■□□□ 1.99
CLN3-262ENST00000637699 ARXQ96QS3 562 aa27.46■■□□□ 1.99
CLN3-262ENST00000637699 PAPPAQ13219 1627 aa27.45■■□□□ 1.98
CLN3-262ENST00000637699 ZNF784Q8NCA9 323 aaPredicted RBP27.42■■□□□ 1.98
CLN3-262ENST00000637699 PUS7Q96PZ0 661 aaKnown RBP27.42■■□□□ 1.98
CLN3-262ENST00000637699 TONSLQ96HA7 1378 aa27.41■■□□□ 1.98
CLN3-262ENST00000637699 AKT1S1Q96B36 256 aa27.39■■□□□ 1.98
CLN3-262ENST00000637699 SYTL4Q96C24 671 aaPredicted RBP27.39■■□□□ 1.98
CLN3-262ENST00000637699 COG3Q96JB2 828 aa27.39■■□□□ 1.98
CLN3-262ENST00000637699 FBLN1P23142 703 aa27.38■■□□□ 1.97
CLN3-262ENST00000637699 KCNQ4P56696 695 aa27.37■■□□□ 1.97
CLN3-262ENST00000637699 SLC27A3Q5K4L6 730 aa27.37■■□□□ 1.97
CLN3-262ENST00000637699 MAP3K19Q56UN5 1328 aa27.37■■□□□ 1.97
CLN3-262ENST00000637699 HOXC9P31274 260 aa27.36■■□□□ 1.97
CLN3-262ENST00000637699 AMPHP49418 695 aa27.36■■□□□ 1.97
CLN3-262ENST00000637699 PRIM1P49642 420 aaKnown RBP27.36■■□□□ 1.97
CLN3-262ENST00000637699 ST20-MTHFSA0A0A6YYL1 179 aa27.35■■□□□ 1.97
CLN3-262ENST00000637699 KLHL34Q8N239 644 aa27.35■■□□□ 1.97
CLN3-262ENST00000637699 TESK2Q96S53 571 aa27.35■■□□□ 1.97
CLN3-262ENST00000637699 MAP3K5Q99683 1374 aa27.34■■□□□ 1.97
CLN3-262ENST00000637699 FAM208AQ9UK61 1670 aaKnown RBP27.33■■□□□ 1.97
CLN3-262ENST00000637699 SLC16A10Q8TF71 515 aa27.33■■□□□ 1.97
CLN3-262ENST00000637699 TFCP2L1Q9NZI6 479 aa27.33■■□□□ 1.97
CLN3-262ENST00000637699 ZCRB1Q8TBF4 217 aaKnown RBP27.32■■□□□ 1.96
CLN3-262ENST00000637699 PNPLA7Q6ZV29 1317 aa27.32■■□□□ 1.96
CLN3-262ENST00000637699 POLD1P28340 1107 aa27.31■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 794 ms