RNA–Protein interactions for RNA: ENST00000637184.1

CLN3-258, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,753 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-258ENST00000637184 ARHGEF25Q86VW2 580 aa25.23■■□□□ 1.63
CLN3-258ENST00000637184 ZBTB7CA1YPR0 619 aa25.22■■□□□ 1.63
CLN3-258ENST00000637184 CABLES1Q8TDN4 633 aa25.22■■□□□ 1.63
CLN3-258ENST00000637184 CRYBG1Q9Y4K1 1723 aa25.22■■□□□ 1.63
CLN3-258ENST00000637184 IP6K1Q92551 441 aa25.21■■□□□ 1.63
CLN3-258ENST00000637184 LRRC59Q96AG4 307 aaKnown RBP25.21■■□□□ 1.63
CLN3-258ENST00000637184 RUNDC1Q96C34 613 aa25.21■■□□□ 1.63
CLN3-258ENST00000637184 PNNQ9H307 717 aaKnown RBP25.2■■□□□ 1.62
CLN3-258ENST00000637184 ZC3H6P61129 1189 aaKnown RBP25.18■■□□□ 1.62
CLN3-258ENST00000637184 FCHSD2O94868 740 aa25.18■■□□□ 1.62
CLN3-258ENST00000637184 SALL2Q9Y467 1007 aaPredicted RBP25.18■■□□□ 1.62
CLN3-258ENST00000637184 PHLPP1O60346 1717 aa25.18■■□□□ 1.62
CLN3-258ENST00000637184 APAF1O14727 1248 aa25.17■■□□□ 1.62
CLN3-258ENST00000637184 HMOX1P09601 288 aa25.16■■□□□ 1.62
CLN3-258ENST00000637184 HAP1P54257 671 aaPredicted RBP25.16■■□□□ 1.62
CLN3-258ENST00000637184 RSPH6AQ9H0K4 717 aa25.15■■□□□ 1.62
CLN3-258ENST00000637184 RGPD1P0DJD0 1748 aa25.14■■□□□ 1.62
CLN3-258ENST00000637184 PLEKHF1Q96S99 279 aa25.14■■□□□ 1.62
CLN3-258ENST00000637184 LTV1Q96GA3 475 aaPredicted RBP25.13■■□□□ 1.61
CLN3-258ENST00000637184 MAPK8IP3Q9UPT6 1336 aa25.13■■□□□ 1.61
CLN3-258ENST00000637184 ABCA3Q99758 1704 aa25.13■■□□□ 1.61
CLN3-258ENST00000637184 NEFMP07197 916 aa25.13■■□□□ 1.61
CLN3-258ENST00000637184 TCP11L2Q8N4U5 519 aa25.13■■□□□ 1.61
CLN3-258ENST00000637184 CPDO75976 1380 aa25.12■■□□□ 1.61
CLN3-258ENST00000637184 COL16A1Q07092 1604 aaPredicted RBP25.12■■□□□ 1.61
CLN3-258ENST00000637184 PRKAR2BP31323 418 aa25.12■■□□□ 1.61
CLN3-258ENST00000637184 NGEFQ8N5V2 710 aa25.12■■□□□ 1.61
CLN3-258ENST00000637184 SULT6B1Q6IMI4 303 aa25.11■■□□□ 1.61
CLN3-258ENST00000637184 KIAA0232Q92628 1395 aa25.11■■□□□ 1.61
CLN3-258ENST00000637184 EYA1Q99502 592 aa25.1■■□□□ 1.61
CLN3-258ENST00000637184 RGPD5Q99666 1765 aa25.09■■□□□ 1.61
CLN3-258ENST00000637184 IGSF1Q8N6C5 1336 aa25.09■■□□□ 1.61
CLN3-258ENST00000637184 AXIN2Q9Y2T1 843 aa25.09■■□□□ 1.61
CLN3-258ENST00000637184 ABCC6O95255 1503 aa25.09■■□□□ 1.61
CLN3-258ENST00000637184 COL22A1Q8NFW1 1626 aaPredicted RBP25.08■■□□□ 1.61
CLN3-258ENST00000637184 AEBP1Q8IUX7 1158 aa25.08■■□□□ 1.6
CLN3-258ENST00000637184 COL18A1P39060 1754 aa25.08■■□□□ 1.6
CLN3-258ENST00000637184 NEUROD2Q15784 382 aa25.06■■□□□ 1.6
CLN3-258ENST00000637184 CHRNA2Q15822 529 aa25.06■■□□□ 1.6
CLN3-258ENST00000637184 ANKRD24Q8TF21 1146 aa25.06■■□□□ 1.6
CLN3-258ENST00000637184 PRDM11Q9NQV5 511 aa25.06■■□□□ 1.6
CLN3-258ENST00000637184 RRP7AQ9Y3A4 280 aaKnown RBP25.05■■□□□ 1.6
CLN3-258ENST00000637184 KDRP35968 1356 aa25.05■■□□□ 1.6
CLN3-258ENST00000637184 PDE3BQ13370 1112 aa25.04■■□□□ 1.6
CLN3-258ENST00000637184 NCBP3Q53F19 620 aaKnown RBP25.04■■□□□ 1.6
CLN3-258ENST00000637184 TMPOP42166 694 aaKnown RBP25.03■■□□□ 1.6
CLN3-258ENST00000637184 PHACTR3Q96KR7 559 aa25.03■■□□□ 1.6
CLN3-258ENST00000637184 ERBB3P21860 1342 aa25.03■■□□□ 1.6
CLN3-258ENST00000637184 ZNF521Q96K83 1311 aa25.02■■□□□ 1.6
CLN3-258ENST00000637184 RGPD2P0DJD1 1756 aa25.02■■□□□ 1.6
CLN3-258ENST00000637184 NBPF6Q5VWK0 638 aa25.02■■□□□ 1.6
CLN3-258ENST00000637184 NBPF4Q96M43 638 aa25.02■■□□□ 1.6
CLN3-258ENST00000637184 CCDC27Q2M243 656 aa25■■□□□ 1.59
CLN3-258ENST00000637184 WWC1Q8IX03 1113 aa25■■□□□ 1.59
CLN3-258ENST00000637184 RIPK4P57078 832 aa24.99■■□□□ 1.59
CLN3-258ENST00000637184 NFE2L2Q16236 605 aa24.98■■□□□ 1.59
CLN3-258ENST00000637184 USHBP1Q8N6Y0 703 aa24.98■■□□□ 1.59
CLN3-258ENST00000637184 PHF23Q9BUL5 403 aaPredicted RBP24.98■■□□□ 1.59
CLN3-258ENST00000637184 LMO7Q8WWI1 1683 aa24.98■■□□□ 1.59
CLN3-258ENST00000637184 GOLGA2Q08379 1002 aa24.98■■□□□ 1.59
CLN3-258ENST00000637184 CSB-PGBD3P0DP91 1061 aa24.97■■□□□ 1.59
CLN3-258ENST00000637184 FAM208AQ9UK61 1670 aaKnown RBP24.97■■□□□ 1.59
CLN3-258ENST00000637184 FAM83GA6ND36 823 aa24.96■■□□□ 1.59
CLN3-258ENST00000637184 CAMTA1Q9Y6Y1 1673 aa24.96■■□□□ 1.59
CLN3-258ENST00000637184 CDCA7LQ96GN5 454 aa24.95■■□□□ 1.59
CLN3-258ENST00000637184 NCAPD2Q15021 1401 aa24.94■■□□□ 1.58
CLN3-258ENST00000637184 NLRP2Q9NX02 1062 aa24.94■■□□□ 1.58
CLN3-258ENST00000637184 TRIM35Q9UPQ4 493 aa24.93■■□□□ 1.58
CLN3-258ENST00000637184 JCADQ9P266 1359 aa24.93■■□□□ 1.58
CLN3-258ENST00000637184 COL14A1Q05707 1796 aaKnown RBP24.93■■□□□ 1.58
CLN3-258ENST00000637184 WDR63Q8IWG1 891 aa24.93■■□□□ 1.58
CLN3-258ENST00000637184 DLG5Q8TDM6 1919 aa24.93■■□□□ 1.58
CLN3-258ENST00000637184 COL5A2P05997 1499 aaPredicted RBP24.92■■□□□ 1.58
CLN3-258ENST00000637184 WDR17Q8IZU2 1322 aa24.9■■□□□ 1.58
CLN3-258ENST00000637184 LMOD3Q0VAK6 560 aa24.9■■□□□ 1.58
CLN3-258ENST00000637184 NUTM2BA6NNL0 878 aaPredicted RBP24.9■■□□□ 1.58
CLN3-258ENST00000637184 NUTM2EB1AL46 878 aaPredicted RBP24.9■■□□□ 1.58
CLN3-258ENST00000637184 EVA1CP58658 441 aa24.9■■□□□ 1.58
CLN3-258ENST00000637184 NUTM2AQ8IVF1 878 aaPredicted RBP24.9■■□□□ 1.58
CLN3-258ENST00000637184 GAS2L2Q8NHY3 880 aa24.9■■□□□ 1.58
CLN3-258ENST00000637184 E9PSI1 815 aa24.89■■□□□ 1.57
CLN3-258ENST00000637184 SLFN5Q08AF3 891 aa24.89■■□□□ 1.57
CLN3-258ENST00000637184 MTHFSDQ2M296 383 aaKnown RBP24.89■■□□□ 1.57
CLN3-258ENST00000637184 ADAMTS2O95450 1211 aa24.88■■□□□ 1.57
CLN3-258ENST00000637184 STRN4Q9NRL3 753 aa24.88■■□□□ 1.57
CLN3-258ENST00000637184 BTG4Q9NY30 223 aa24.88■■□□□ 1.57
CLN3-258ENST00000637184 HSPA1LP34931 641 aa24.87■■□□□ 1.57
CLN3-258ENST00000637184 TOM1L2Q6ZVM7 507 aa24.87■■□□□ 1.57
CLN3-258ENST00000637184 SPINK5Q9NQ38 1064 aaPredicted RBP24.86■■□□□ 1.57
CLN3-258ENST00000637184 DUSP27Q5VZP5 1158 aa24.85■■□□□ 1.57
CLN3-258ENST00000637184 RAPGEF4Q8WZA2 1011 aa24.85■■□□□ 1.57
CLN3-258ENST00000637184 PLEKHO1Q53GL0 409 aaPredicted RBP24.84■■□□□ 1.57
CLN3-258ENST00000637184 TRMT2AQ8IZ69 625 aaKnown RBP24.84■■□□□ 1.57
CLN3-258ENST00000637184 CALD1Q05682 793 aaKnown RBP24.83■■□□□ 1.57
CLN3-258ENST00000637184 AMOTQ4VCS5 1084 aa24.83■■□□□ 1.57
CLN3-258ENST00000637184 IL16Q14005 1332 aa24.83■■□□□ 1.57
CLN3-258ENST00000637184 SPATA31A6Q5VVP1 1343 aa24.83■■□□□ 1.57
CLN3-258ENST00000637184 LARP1Q6PKG0 1096 aaKnown RBP24.82■■□□□ 1.56
CLN3-258ENST00000637184 PLCH1Q4KWH8 1693 aa24.82■■□□□ 1.56
CLN3-258ENST00000637184 CARD10Q9BWT7 1032 aa24.82■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 87.8 ms