RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 MFAP1P55081 439 aaKnown RBP8.4□□□□□ -1.06
SCN1A-213ENST00000636759 KLHL40Q2TBA0 621 aa8.4□□□□□ -1.06
SCN1A-213ENST00000636759 SPINK5Q9NQ38 1064 aaPredicted RBP8.4□□□□□ -1.06
SCN1A-213ENST00000636759 KIF13AQ9H1H9 1805 aa8.4□□□□□ -1.06
SCN1A-213ENST00000636759 CLTCQ00610 1675 aaKnown RBP8.4□□□□□ -1.06
SCN1A-213ENST00000636759 PDLIM2Q96JY6 352 aa8.4□□□□□ -1.07
SCN1A-213ENST00000636759 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.4□□□□□ -1.07
SCN1A-213ENST00000636759 MYCNP04198 464 aaPredicted RBP8.39□□□□□ -1.07
SCN1A-213ENST00000636759 DNAJC5Q9H3Z4 198 aa8.39□□□□□ -1.07
SCN1A-213ENST00000636759 YY1AP1Q9H869 796 aa8.39□□□□□ -1.07
SCN1A-213ENST00000636759 BCL2L12Q9HB09 334 aa8.39□□□□□ -1.07
SCN1A-213ENST00000636759 DIAPH3Q9NSV4 1193 aa8.39□□□□□ -1.07
SCN1A-213ENST00000636759 IBTKQ9P2D0 1353 aaPredicted RBP8.39□□□□□ -1.07
SCN1A-213ENST00000636759 SBNO2Q9Y2G9 1366 aa8.39□□□□□ -1.07
SCN1A-213ENST00000636759 PREX1Q8TCU6 1659 aa8.39□□□□□ -1.07
SCN1A-213ENST00000636759 MYO5BQ9ULV0 1848 aa8.39□□□□□ -1.07
SCN1A-213ENST00000636759 HSP90B1P14625 803 aaKnown RBP8.39□□□□□ -1.07
SCN1A-213ENST00000636759 JARID2Q92833 1246 aaPredicted RBP8.39□□□□□ -1.07
SCN1A-213ENST00000636759 EIF3AQ14152 1382 aaKnown RBP8.39□□□□□ -1.07
SCN1A-213ENST00000636759 FAM177BA6PVY3 158 aa8.39□□□□□ -1.07
SCN1A-213ENST00000636759 MMP14P50281 582 aa8.39□□□□□ -1.07
SCN1A-213ENST00000636759 ZBTB9Q96C00 473 aa8.39□□□□□ -1.07
SCN1A-213ENST00000636759 GTF2F1P35269 517 aaKnown RBP eCLIP8.38□□□□□ -1.07
SCN1A-213ENST00000636759 CAVIN1Q6NZI2 390 aaKnown RBP8.38□□□□□ -1.07
SCN1A-213ENST00000636759 GEMIN8Q9NWZ8 242 aaKnown RBP8.38□□□□□ -1.07
SCN1A-213ENST00000636759 ERICH4A6NGS2 130 aa8.38□□□□□ -1.07
SCN1A-213ENST00000636759 NEXMIFQ5QGS0 1516 aa8.38□□□□□ -1.07
SCN1A-213ENST00000636759 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.37□□□□□ -1.07
SCN1A-213ENST00000636759 ZNF445P59923 1031 aa8.37□□□□□ -1.07
SCN1A-213ENST00000636759 SLFN5Q08AF3 891 aa8.37□□□□□ -1.07
SCN1A-213ENST00000636759 DMRT2Q9Y5R5 561 aa8.37□□□□□ -1.07
SCN1A-213ENST00000636759 NKTRP30414 1462 aaKnown RBP8.37□□□□□ -1.07
SCN1A-213ENST00000636759 RAB3GAP1Q15042 981 aa8.37□□□□□ -1.07
SCN1A-213ENST00000636759 NGEFQ8N5V2 710 aa8.37□□□□□ -1.07
SCN1A-213ENST00000636759 CHMP4CQ96CF2 233 aa8.37□□□□□ -1.07
SCN1A-213ENST00000636759 TRERF1Q96PN7 1200 aa8.37□□□□□ -1.07
SCN1A-213ENST00000636759 PHF23Q9BUL5 403 aaPredicted RBP8.37□□□□□ -1.07
SCN1A-213ENST00000636759 EFCC1Q9HA90 598 aa8.37□□□□□ -1.07
SCN1A-213ENST00000636759 AGLP35573 1532 aa8.37□□□□□ -1.07
SCN1A-213ENST00000636759 YEATS2Q9ULM3 1422 aa8.36□□□□□ -1.07
SCN1A-213ENST00000636759 IGHDP01880 384 aa8.36□□□□□ -1.07
SCN1A-213ENST00000636759 CARD14Q9BXL6 1004 aa8.36□□□□□ -1.07
SCN1A-213ENST00000636759 TULP4Q9NRJ4 1543 aa8.36□□□□□ -1.07
SCN1A-213ENST00000636759 CGNL1Q0VF96 1302 aa8.36□□□□□ -1.07
SCN1A-213ENST00000636759 TMEM131LA2VDJ0 1609 aa8.36□□□□□ -1.07
SCN1A-213ENST00000636759 RBSNQ9H1K0 784 aa8.36□□□□□ -1.07
SCN1A-213ENST00000636759 KCNG1Q9UIX4 513 aa8.36□□□□□ -1.07
SCN1A-213ENST00000636759 SETD1AO15047 1707 aaKnown RBP8.36□□□□□ -1.07
SCN1A-213ENST00000636759 COL3A1P02461 1466 aaPredicted RBP8.35□□□□□ -1.07
SCN1A-213ENST00000636759 CFAP65Q6ZU64 1925 aaKnown RBP8.35□□□□□ -1.07
SCN1A-213ENST00000636759 TMF1P82094 1093 aa8.35□□□□□ -1.07
SCN1A-213ENST00000636759 RAPGEF3O95398 923 aa8.35□□□□□ -1.07
SCN1A-213ENST00000636759 GTF2A1P52655 376 aaPredicted RBP8.35□□□□□ -1.07
SCN1A-213ENST00000636759 NOLC1Q14978 699 aaKnown RBP eCLIP8.35□□□□□ -1.07
SCN1A-213ENST00000636759 ZNF692Q9BU19 519 aaPredicted RBP8.35□□□□□ -1.07
SCN1A-213ENST00000636759 FOXD4L1Q9NU39 408 aa8.35□□□□□ -1.07
SCN1A-213ENST00000636759 LMOD3Q0VAK6 560 aa8.35□□□□□ -1.07
SCN1A-213ENST00000636759 ZSCAN23Q3MJ62 389 aa8.35□□□□□ -1.07
SCN1A-213ENST00000636759 PMFBP1Q8TBY8 1022 aa8.35□□□□□ -1.07
SCN1A-213ENST00000636759 SLC52A1Q9NWF4 448 aa8.35□□□□□ -1.07
SCN1A-213ENST00000636759 TSPOAP1O95153 1857 aa8.34□□□□□ -1.07
SCN1A-213ENST00000636759 SMC5Q8IY18 1101 aa8.34□□□□□ -1.07
SCN1A-213ENST00000636759 CLUAP1Q96AJ1 413 aa8.34□□□□□ -1.07
SCN1A-213ENST00000636759 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP8.34□□□□□ -1.07
SCN1A-213ENST00000636759 ADGRF5Q8IZF2 1346 aa8.34□□□□□ -1.07
SCN1A-213ENST00000636759 POLR3AO14802 1390 aaPredicted RBP8.34□□□□□ -1.07
SCN1A-213ENST00000636759 CAPN2P17655 700 aa8.34□□□□□ -1.07
SCN1A-213ENST00000636759 PSEN1P49768 467 aa8.34□□□□□ -1.07
SCN1A-213ENST00000636759 ZFYVE9O95405 1425 aa8.34□□□□□ -1.07
SCN1A-213ENST00000636759 TULP1O00294 542 aaPredicted RBP8.34□□□□□ -1.08
SCN1A-213ENST00000636759 SOX12O15370 315 aa8.34□□□□□ -1.08
SCN1A-213ENST00000636759 SLFN14P0C7P3 912 aa8.34□□□□□ -1.08
SCN1A-213ENST00000636759 PRIM1P49642 420 aaKnown RBP8.34□□□□□ -1.08
SCN1A-213ENST00000636759 GOLGA2Q08379 1002 aa8.34□□□□□ -1.08
SCN1A-213ENST00000636759 PIBF1Q8WXW3 757 aa8.34□□□□□ -1.08
SCN1A-213ENST00000636759 RPGRIP1LQ68CZ1 1315 aa8.33□□□□□ -1.08
SCN1A-213ENST00000636759 LOC102724159A0A0B4J2E5 919 aa8.33□□□□□ -1.08
SCN1A-213ENST00000636759 TULP2O00295 520 aa8.33□□□□□ -1.08
SCN1A-213ENST00000636759 PWP2Q15269 919 aaKnown RBP8.33□□□□□ -1.08
SCN1A-213ENST00000636759 GOLGA6L6A8MZA4 724 aa8.33□□□□□ -1.08
SCN1A-213ENST00000636759 TERF2Q15554 542 aa8.33□□□□□ -1.08
SCN1A-213ENST00000636759 MCTP1Q6DN14 999 aa8.33□□□□□ -1.08
SCN1A-213ENST00000636759 RNF214Q8ND24 703 aa8.33□□□□□ -1.08
SCN1A-213ENST00000636759 BANK1Q8NDB2 785 aa8.33□□□□□ -1.08
SCN1A-213ENST00000636759 KIF20BQ96Q89 1820 aa8.33□□□□□ -1.08
SCN1A-213ENST00000636759 CTR9Q6PD62 1173 aa8.33□□□□□ -1.08
SCN1A-213ENST00000636759 KRT222Q8N1A0 295 aa8.33□□□□□ -1.08
SCN1A-213ENST00000636759 CNKSR2Q8WXI2 1034 aa8.33□□□□□ -1.08
SCN1A-213ENST00000636759 MYCBPQ99417 103 aaPredicted RBP8.33□□□□□ -1.08
SCN1A-213ENST00000636759 CDC42BPGQ6DT37 1551 aa8.32□□□□□ -1.08
SCN1A-213ENST00000636759 SSFA2P28290 1259 aa8.32□□□□□ -1.08
SCN1A-213ENST00000636759 BAG4O95429 457 aaKnown RBP8.32□□□□□ -1.08
SCN1A-213ENST00000636759 WDR43Q15061 677 aaKnown RBP eCLIP8.32□□□□□ -1.08
SCN1A-213ENST00000636759 RSPH14Q9UHP6 348 aa8.32□□□□□ -1.08
SCN1A-213ENST00000636759 CYB5RLQ6IPT4 315 aa8.31□□□□□ -1.08
SCN1A-213ENST00000636759 FEZ2Q9UHY8 353 aaPredicted RBP8.31□□□□□ -1.08
SCN1A-213ENST00000636759 ZMYM3Q14202 1370 aa8.31□□□□□ -1.08
SCN1A-213ENST00000636759 ARHGEF40Q8TER5 1519 aa8.31□□□□□ -1.08
SCN1A-213ENST00000636759 C14orf37Q86TY3 774 aa8.31□□□□□ -1.08
SCN1A-213ENST00000636759 CREBRFQ8IUR6 639 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 93.7 ms