RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 U2SURPO15042 1029 aaKnown RBP13.91□□□□□ -0.18
CLN3-248ENST00000636355 GOLGA2Q08379 1002 aa13.91□□□□□ -0.18
CLN3-248ENST00000636355 RRS1Q15050 365 aaKnown RBP13.91□□□□□ -0.18
CLN3-248ENST00000636355 RSPH6AQ9H0K4 717 aa13.91□□□□□ -0.18
CLN3-248ENST00000636355 PLEKHG2Q9H7P9 1386 aa13.91□□□□□ -0.18
CLN3-248ENST00000636355 E9PSI1 815 aa13.9□□□□□ -0.18
CLN3-248ENST00000636355 FOXO3O43524 673 aa13.9□□□□□ -0.18
CLN3-248ENST00000636355 PAK3O75914 559 aaPredicted RBP13.9□□□□□ -0.18
CLN3-248ENST00000636355 CCDC146Q8IYE0 955 aa13.9□□□□□ -0.18
CLN3-248ENST00000636355 TCP11L2Q8N4U5 519 aa13.9□□□□□ -0.18
CLN3-248ENST00000636355 NCAPD2Q15021 1401 aa13.9□□□□□ -0.19
CLN3-248ENST00000636355 RNF123Q5XPI4 1314 aa13.9□□□□□ -0.19
CLN3-248ENST00000636355 LMO7Q8WWI1 1683 aa13.89□□□□□ -0.19
CLN3-248ENST00000636355 PPM1GO15355 546 aaPredicted RBP13.89□□□□□ -0.19
CLN3-248ENST00000636355 ERICH6BQ5W0A0 696 aa13.89□□□□□ -0.19
CLN3-248ENST00000636355 KRT28Q7Z3Y7 464 aa13.89□□□□□ -0.19
CLN3-248ENST00000636355 WDR63Q8IWG1 891 aa13.89□□□□□ -0.19
CLN3-248ENST00000636355 IL16Q14005 1332 aa13.89□□□□□ -0.19
CLN3-248ENST00000636355 IGSF1Q8N6C5 1336 aa13.89□□□□□ -0.19
CLN3-248ENST00000636355 EIF4A2Q14240 407 aaKnown RBP13.88□□□□□ -0.19
CLN3-248ENST00000636355 LRRC37A3O60309 1634 aa13.87□□□□□ -0.19
CLN3-248ENST00000636355 COL22A1Q8NFW1 1626 aaPredicted RBP13.87□□□□□ -0.19
CLN3-248ENST00000636355 COL18A1P39060 1754 aa13.87□□□□□ -0.19
CLN3-248ENST00000636355 AMPHP49418 695 aa13.87□□□□□ -0.19
CLN3-248ENST00000636355 BRINP3Q76B58 766 aa13.87□□□□□ -0.19
CLN3-248ENST00000636355 WWC1Q8IX03 1113 aa13.87□□□□□ -0.19
CLN3-248ENST00000636355 TRMT2AQ8IZ69 625 aaKnown RBP13.87□□□□□ -0.19
CLN3-248ENST00000636355 ROBO1Q9Y6N7 1651 aa13.87□□□□□ -0.19
CLN3-248ENST00000636355 CPDO75976 1380 aa13.86□□□□□ -0.19
CLN3-248ENST00000636355 HOXC9P31274 260 aa13.86□□□□□ -0.19
CLN3-248ENST00000636355 SLFN5Q08AF3 891 aa13.86□□□□□ -0.19
CLN3-248ENST00000636355 LMOD3Q0VAK6 560 aa13.86□□□□□ -0.19
CLN3-248ENST00000636355 SOS2Q07890 1332 aaPredicted RBP13.86□□□□□ -0.19
CLN3-248ENST00000636355 SPATA31A3Q5VYP0 1347 aa13.86□□□□□ -0.19
CLN3-248ENST00000636355 PRKAR2BP31323 418 aa13.85□□□□□ -0.19
CLN3-248ENST00000636355 TMPOP42166 694 aaKnown RBP13.85□□□□□ -0.19
CLN3-248ENST00000636355 CALD1Q05682 793 aaKnown RBP13.85□□□□□ -0.19
CLN3-248ENST00000636355 DUSP27Q5VZP5 1158 aa13.85□□□□□ -0.19
CLN3-248ENST00000636355 SLAIN2Q9P270 581 aa13.85□□□□□ -0.19
CLN3-248ENST00000636355 FBLN1P23142 703 aa13.84□□□□□ -0.19
CLN3-248ENST00000636355 IP6K1Q92551 441 aa13.84□□□□□ -0.19
CLN3-248ENST00000636355 GCP02774 474 aa13.83□□□□□ -0.2
CLN3-248ENST00000636355 NFE2L2Q16236 605 aa13.83□□□□□ -0.2
CLN3-248ENST00000636355 HSP90AB2PQ58FF8 381 aa13.83□□□□□ -0.2
CLN3-248ENST00000636355 ARHGEF25Q86VW2 580 aa13.83□□□□□ -0.2
CLN3-248ENST00000636355 MYH16Q9H6N6 1097 aa13.83□□□□□ -0.2
CLN3-248ENST00000636355 RGPD5Q99666 1765 aa13.83□□□□□ -0.2
CLN3-248ENST00000636355 CT47B1P0C2W7 299 aaPredicted RBP13.82□□□□□ -0.2
CLN3-248ENST00000636355 RCAN3Q9UKA8 241 aa13.82□□□□□ -0.2
CLN3-248ENST00000636355 RGPD2P0DJD1 1756 aa13.81□□□□□ -0.2
CLN3-248ENST00000636355 CDCA7LQ96GN5 454 aa13.81□□□□□ -0.2
CLN3-248ENST00000636355 SALL2Q9Y467 1007 aaPredicted RBP13.81□□□□□ -0.2
CLN3-248ENST00000636355 SUPT16HQ9Y5B9 1047 aaKnown RBP13.81□□□□□ -0.2
CLN3-248ENST00000636355 NUTM2GQ5VZR2 741 aa13.8□□□□□ -0.2
CLN3-248ENST00000636355 SOX12O15370 315 aa13.79□□□□□ -0.2
CLN3-248ENST00000636355 HSPA1LP34931 641 aa13.79□□□□□ -0.2
CLN3-248ENST00000636355 PIP4K2BP78356 416 aa13.79□□□□□ -0.2
CLN3-248ENST00000636355 XPCQ01831 940 aaPredicted RBP13.79□□□□□ -0.2
CLN3-248ENST00000636355 TRIM35Q9UPQ4 493 aa13.79□□□□□ -0.2
CLN3-248ENST00000636355 COL16A1Q07092 1604 aaPredicted RBP13.79□□□□□ -0.2
CLN3-248ENST00000636355 HMOX1P09601 288 aa13.78□□□□□ -0.2
CLN3-248ENST00000636355 RIPK4P57078 832 aa13.78□□□□□ -0.2
CLN3-248ENST00000636355 SULT6B1Q6IMI4 303 aa13.78□□□□□ -0.2
CLN3-248ENST00000636355 OVOS2A0A0G2JMS6 1433 aa13.78□□□□□ -0.2
CLN3-248ENST00000636355 PHLPP1O60346 1717 aa13.78□□□□□ -0.2
CLN3-248ENST00000636355 PKD1L3Q7Z443 1732 aa13.78□□□□□ -0.2
CLN3-248ENST00000636355 PARP4Q9UKK3 1724 aaKnown RBP13.78□□□□□ -0.2
CLN3-248ENST00000636355 ERBB3P21860 1342 aa13.77□□□□□ -0.21
CLN3-248ENST00000636355 RRP1P56182 461 aaKnown RBP13.77□□□□□ -0.21
CLN3-248ENST00000636355 VIRMAQ69YN4 1812 aaKnown RBP13.77□□□□□ -0.21
CLN3-248ENST00000636355 GAS2L2Q8NHY3 880 aa13.77□□□□□ -0.21
CLN3-248ENST00000636355 EYA1Q99502 592 aa13.77□□□□□ -0.21
CLN3-248ENST00000636355 ADAMTS7Q9UKP4 1686 aa13.77□□□□□ -0.21
CLN3-248ENST00000636355 RRP7AQ9Y3A4 280 aaKnown RBP13.77□□□□□ -0.21
CLN3-248ENST00000636355 COL14A1Q05707 1796 aaKnown RBP13.76□□□□□ -0.21
CLN3-248ENST00000636355 HTATSF1O43719 755 aaKnown RBP13.76□□□□□ -0.21
CLN3-248ENST00000636355 LMOD2Q6P5Q4 547 aa13.76□□□□□ -0.21
CLN3-248ENST00000636355 FKBP8Q14318 412 aa13.75□□□□□ -0.21
CLN3-248ENST00000636355 NEUROD2Q15784 382 aa13.75□□□□□ -0.21
CLN3-248ENST00000636355 AEBP1Q8IUX7 1158 aa13.75□□□□□ -0.21
CLN3-248ENST00000636355 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.75□□□□□ -0.21
CLN3-248ENST00000636355 ZNF428Q96B54 188 aa13.75□□□□□ -0.21
CLN3-248ENST00000636355 PHACTR3Q96KR7 559 aa13.75□□□□□ -0.21
CLN3-248ENST00000636355 IFT57Q9NWB7 429 aa13.75□□□□□ -0.21
CLN3-248ENST00000636355 PLCH1Q4KWH8 1693 aa13.75□□□□□ -0.21
CLN3-248ENST00000636355 FANCIQ9NVI1 1328 aa13.74□□□□□ -0.21
CLN3-248ENST00000636355 SENP3-EIF4A1A0A087X0R7 540 aa13.74□□□□□ -0.21
CLN3-248ENST00000636355 MAP3K5Q99683 1374 aa13.73□□□□□ -0.21
CLN3-248ENST00000636355 TOM1O60784 492 aa13.73□□□□□ -0.21
CLN3-248ENST00000636355 GNAI1P63096 354 aa13.73□□□□□ -0.21
CLN3-248ENST00000636355 SPINK5Q9NQ38 1064 aaPredicted RBP13.73□□□□□ -0.21
CLN3-248ENST00000636355 KIAA0232Q92628 1395 aa13.71□□□□□ -0.21
CLN3-248ENST00000636355 HAP1P54257 671 aaPredicted RBP13.71□□□□□ -0.21
CLN3-248ENST00000636355 ANKRD24Q8TF21 1146 aa13.71□□□□□ -0.21
CLN3-248ENST00000636355 DDX17Q92841 729 aaKnown RBP13.71□□□□□ -0.21
CLN3-248ENST00000636355 COL5A2P05997 1499 aaPredicted RBP13.71□□□□□ -0.21
CLN3-248ENST00000636355 WNK3Q9BYP7 1800 aa13.71□□□□□ -0.22
CLN3-248ENST00000636355 CACNA1FO60840 1977 aa13.71□□□□□ -0.22
CLN3-248ENST00000636355 SIPA1L3O60292 1781 aaPredicted RBP13.71□□□□□ -0.22
CLN3-248ENST00000636355 KDM3BQ7LBC6 1761 aa13.71□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms