RNA–Protein interactions for RNA: ENST00000636306.1

CHD2-223, Transcript of chromodomain helicase DNA binding protein 2, human

TSL 5

Gene CHD2, Length 1,755 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD2-223	ENST00000636306	ZSCAN20	P17040	1043 aa	Predicted RBP	13.44	□□□□□ -0.26
CHD2-223	ENST00000636306	MCM5	P33992	734 aa		13.44	□□□□□ -0.26
CHD2-223	ENST00000636306	R3HCC1	Q9Y3T6	440 aa	Known RBP	13.43	□□□□□ -0.26
CHD2-223	ENST00000636306	CD163L1	Q9NR16	1453 aa		13.43	□□□□□ -0.26
CHD2-223	ENST00000636306	IBTK	Q9P2D0	1353 aa	Predicted RBP	13.43	□□□□□ -0.26
CHD2-223	ENST00000636306	PLEKHG1	Q9ULL1	1385 aa		13.43	□□□□□ -0.26
CHD2-223	ENST00000636306	MON2	Q7Z3U7	1717 aa		13.43	□□□□□ -0.26
CHD2-223	ENST00000636306	CDC42BPG	Q6DT37	1551 aa		13.43	□□□□□ -0.26
CHD2-223	ENST00000636306	RUNDC1	Q96C34	613 aa		13.43	□□□□□ -0.26
CHD2-223	ENST00000636306	SENP3-EIF4A1	A0A087X0R7	540 aa		13.42	□□□□□ -0.26
CHD2-223	ENST00000636306	SASS6	Q6UVJ0	657 aa		13.42	□□□□□ -0.26
CHD2-223	ENST00000636306	CDK19	Q9BWU1	502 aa		13.42	□□□□□ -0.26
CHD2-223	ENST00000636306	CIZ1	Q9ULV3	898 aa	Predicted RBP	13.42	□□□□□ -0.26
CHD2-223	ENST00000636306	SLIT1	O75093	1534 aa		13.42	□□□□□ -0.26
CHD2-223	ENST00000636306	AKAP12	Q02952	1782 aa		13.42	□□□□□ -0.26
CHD2-223	ENST00000636306	EDC4	Q6P2E9	1401 aa	Known RBP	13.41	□□□□□ -0.26
CHD2-223	ENST00000636306	APAF1	O14727	1248 aa		13.4	□□□□□ -0.26
CHD2-223	ENST00000636306	SEC24B	O95487	1268 aa		13.4	□□□□□ -0.26
CHD2-223	ENST00000636306	SLFN5	Q08AF3	891 aa		13.4	□□□□□ -0.26
CHD2-223	ENST00000636306	DUSP27	Q5VZP5	1158 aa		13.4	□□□□□ -0.26
CHD2-223	ENST00000636306	TMEM51	Q9NW97	253 aa		13.4	□□□□□ -0.26
CHD2-223	ENST00000636306	NOL7	Q9UMY1	257 aa	Known RBP	13.4	□□□□□ -0.26
CHD2-223	ENST00000636306	MTHFS	P49914	203 aa		13.4	□□□□□ -0.26
CHD2-223	ENST00000636306	CCDC146	Q8IYE0	955 aa		13.4	□□□□□ -0.26
CHD2-223	ENST00000636306	GAS2L3	Q86XJ1	694 aa		13.39	□□□□□ -0.27
CHD2-223	ENST00000636306	GBP4	Q96PP9	640 aa		13.39	□□□□□ -0.27
CHD2-223	ENST00000636306	ARHGAP23	Q9P227	1491 aa		13.39	□□□□□ -0.27
CHD2-223	ENST00000636306	TOPAZ1	Q8N9V7	1692 aa		13.39	□□□□□ -0.27
CHD2-223	ENST00000636306	NASP	P49321	788 aa	Predicted RBP	13.38	□□□□□ -0.27
CHD2-223	ENST00000636306	CCDC27	Q2M243	656 aa		13.38	□□□□□ -0.27
CHD2-223	ENST00000636306	NCOA3	Q9Y6Q9	1424 aa		13.38	□□□□□ -0.27
CHD2-223	ENST00000636306	COL3A1	P02461	1466 aa	Predicted RBP	13.38	□□□□□ -0.27
CHD2-223	ENST00000636306	TRMT2A	Q8IZ69	625 aa	Known RBP	13.37	□□□□□ -0.27
CHD2-223	ENST00000636306	ZNF692	Q9BU19	519 aa	Predicted RBP	13.37	□□□□□ -0.27
CHD2-223	ENST00000636306	EID1	Q9Y6B2	187 aa		13.37	□□□□□ -0.27
CHD2-223	ENST00000636306	MET	P08581	1390 aa		13.37	□□□□□ -0.27
CHD2-223	ENST00000636306	PPIP5K1	Q6PFW1	1433 aa		13.37	□□□□□ -0.27
CHD2-223	ENST00000636306	RIMS1	Q86UR5	1692 aa	Known RBP	13.37	□□□□□ -0.27
CHD2-223	ENST00000636306	WASL	O00401	505 aa	Predicted RBP	13.37	□□□□□ -0.27
CHD2-223	ENST00000636306	CHMP4B	Q9H444	224 aa	Known RBP	13.37	□□□□□ -0.27
CHD2-223	ENST00000636306	PRDM10	Q9NQV6	1147 aa		13.37	□□□□□ -0.27
CHD2-223	ENST00000636306	ADAMTS13	Q76LX8	1427 aa		13.36	□□□□□ -0.27
CHD2-223	ENST00000636306	DDIT3	P35638	169 aa		13.36	□□□□□ -0.27
CHD2-223	ENST00000636306	WDR63	Q8IWG1	891 aa		13.36	□□□□□ -0.27
CHD2-223	ENST00000636306	CPSF1	Q10570	1443 aa	Known RBP	13.36	□□□□□ -0.27
CHD2-223	ENST00000636306	CABP1	Q9NZU7	370 aa		13.35	□□□□□ -0.27
CHD2-223	ENST00000636306	PTCH1	Q13635	1447 aa		13.34	□□□□□ -0.27
CHD2-223	ENST00000636306	FYB1	O15117	783 aa		13.34	□□□□□ -0.27
CHD2-223	ENST00000636306	GGNBP2	Q9H3C7	697 aa		13.34	□□□□□ -0.27
CHD2-223	ENST00000636306	CDK12	Q9NYV4	1490 aa	Predicted RBP	13.34	□□□□□ -0.27
CHD2-223	ENST00000636306	U2AF1L5	P0DN76	240 aa	Predicted RBP	13.33	□□□□□ -0.28
CHD2-223	ENST00000636306	RBM25	P49756	843 aa	Known RBP	13.33	□□□□□ -0.28
CHD2-223	ENST00000636306	U2AF1	Q01081	240 aa	Known RBP eCLIP	13.33	□□□□□ -0.28
CHD2-223	ENST00000636306	WAPL	Q7Z5K2	1190 aa		13.33	□□□□□ -0.28
CHD2-223	ENST00000636306	WWC1	Q8IX03	1113 aa		13.33	□□□□□ -0.28
CHD2-223	ENST00000636306	NRK	Q7Z2Y5	1582 aa		13.33	□□□□□ -0.28
CHD2-223	ENST00000636306	ZNF142	P52746	1687 aa	Predicted RBP	13.32	□□□□□ -0.28
CHD2-223	ENST00000636306	HSCB	Q8IWL3	235 aa		13.32	□□□□□ -0.28
CHD2-223	ENST00000636306	TCP11L2	Q8N4U5	519 aa		13.32	□□□□□ -0.28
CHD2-223	ENST00000636306	PDLIM2	Q96JY6	352 aa		13.32	□□□□□ -0.28
CHD2-223	ENST00000636306	PNPLA6	Q8IY17	1366 aa		13.32	□□□□□ -0.28
CHD2-223	ENST00000636306	IGHD	P01880	384 aa		13.32	□□□□□ -0.28
CHD2-223	ENST00000636306	PDE3A	Q14432	1141 aa		13.32	□□□□□ -0.28
CHD2-223	ENST00000636306	ZKSCAN5	Q9Y2L8	839 aa		13.32	□□□□□ -0.28
CHD2-223	ENST00000636306	CCDC61	Q9Y6R9	512 aa		13.32	□□□□□ -0.28
CHD2-223	ENST00000636306	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	13.32	□□□□□ -0.28
CHD2-223	ENST00000636306	AATK	Q6ZMQ8	1374 aa		13.31	□□□□□ -0.28
CHD2-223	ENST00000636306	SMC5	Q8IY18	1101 aa		13.31	□□□□□ -0.28
CHD2-223	ENST00000636306	FTSJ3	Q8IY81	847 aa	Known RBP	13.31	□□□□□ -0.28
CHD2-223	ENST00000636306	XRN1	Q8IZH2	1706 aa	Known RBP	13.31	□□□□□ -0.28
CHD2-223	ENST00000636306	THEMIS	Q8N1K5	641 aa	Predicted RBP	13.31	□□□□□ -0.28
CHD2-223	ENST00000636306	SNX21	Q969T3	373 aa		13.31	□□□□□ -0.28
CHD2-223	ENST00000636306	MAP2	P11137	1827 aa	Known RBP	13.3	□□□□□ -0.28
CHD2-223	ENST00000636306	DIAPH1	O60610	1272 aa	Known RBP	13.3	□□□□□ -0.28
CHD2-223	ENST00000636306	HSP90AB1	P08238	724 aa	Known RBP	13.3	□□□□□ -0.28
CHD2-223	ENST00000636306	CT47B1	P0C2W7	299 aa	Predicted RBP	13.3	□□□□□ -0.28
CHD2-223	ENST00000636306	ZNF445	P59923	1031 aa		13.3	□□□□□ -0.28
CHD2-223	ENST00000636306	RAB3GAP1	Q15042	981 aa		13.3	□□□□□ -0.28
CHD2-223	ENST00000636306	TXNDC2	Q86VQ3	553 aa		13.3	□□□□□ -0.28
CHD2-223	ENST00000636306	MYRIP	Q8NFW9	859 aa		13.3	□□□□□ -0.28
CHD2-223	ENST00000636306	PMFBP1	Q8TBY8	1022 aa		13.3	□□□□□ -0.28
CHD2-223	ENST00000636306	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	13.3	□□□□□ -0.28
CHD2-223	ENST00000636306	CLEC17A	Q6ZS10	378 aa		13.3	□□□□□ -0.28
CHD2-223	ENST00000636306	NUDT16	Q96DE0	195 aa	Known RBP	13.3	□□□□□ -0.28
CHD2-223	ENST00000636306	PIK3R4	Q99570	1358 aa		13.29	□□□□□ -0.28
CHD2-223	ENST00000636306	U2SURP	O15042	1029 aa	Known RBP	13.29	□□□□□ -0.28
CHD2-223	ENST00000636306	TNPO1	Q92973	898 aa	Known RBP	13.29	□□□□□ -0.28
CHD2-223	ENST00000636306	PRIMPOL	Q96LW4	560 aa		13.29	□□□□□ -0.28
CHD2-223	ENST00000636306	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	13.29	□□□□□ -0.28
CHD2-223	ENST00000636306	CCDC39	Q9UFE4	941 aa		13.29	□□□□□ -0.28
CHD2-223	ENST00000636306	ROBO2	Q9HCK4	1378 aa		13.29	□□□□□ -0.28
CHD2-223	ENST00000636306	IL16	Q14005	1332 aa		13.28	□□□□□ -0.28
CHD2-223	ENST00000636306	LRRC7	Q96NW7	1537 aa		13.28	□□□□□ -0.28
CHD2-223	ENST00000636306	GOLGA6L22	H0YM25	854 aa		13.28	□□□□□ -0.28
CHD2-223	ENST00000636306	GTF2F1	P35269	517 aa	Known RBP eCLIP	13.28	□□□□□ -0.28
CHD2-223	ENST00000636306	HMGN5	P82970	282 aa	Known RBP	13.28	□□□□□ -0.28
CHD2-223	ENST00000636306	SLC20A2	Q08357	652 aa		13.28	□□□□□ -0.28
CHD2-223	ENST00000636306	C22orf23	Q9BZE7	217 aa		13.28	□□□□□ -0.28
CHD2-223	ENST00000636306	TBX22	Q9Y458	520 aa		13.28	□□□□□ -0.28
CHD2-223	ENST00000636306	NALCN	Q8IZF0	1738 aa		13.28	□□□□□ -0.28

Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms