RNA–Protein interactions for RNA: ENST00000635392.1

SMARCA2-240, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2, human

TSL 5

Gene SMARCA2, Length 291 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMARCA2-240	ENST00000635392	GZF1	Q9H116	711 aa	Predicted RBP	10.82	□□□□□ -0.68
SMARCA2-240	ENST00000635392	CCDC9	Q9Y3X0	531 aa	Known RBP	10.82	□□□□□ -0.68
SMARCA2-240	ENST00000635392	NCOA4	Q13772	614 aa		10.81	□□□□□ -0.68
SMARCA2-240	ENST00000635392	STK32A	Q8WU08	396 aa		10.81	□□□□□ -0.68
SMARCA2-240	ENST00000635392	FOXJ1	Q92949	421 aa		10.81	□□□□□ -0.68
SMARCA2-240	ENST00000635392	MKRN1	Q9UHC7	482 aa	Known RBP	10.81	□□□□□ -0.68
SMARCA2-240	ENST00000635392	FAM196B	A6NMK8	535 aa		10.8	□□□□□ -0.68
SMARCA2-240	ENST00000635392	LZTS3	O60299	673 aa	Predicted RBP	10.8	□□□□□ -0.68
SMARCA2-240	ENST00000635392	PTK7	Q13308	1070 aa		10.8	□□□□□ -0.68
SMARCA2-240	ENST00000635392	CRTC2	Q53ET0	693 aa	Predicted RBP	10.8	□□□□□ -0.68
SMARCA2-240	ENST00000635392	TMEM164	Q5U3C3	297 aa		10.8	□□□□□ -0.68
SMARCA2-240	ENST00000635392	ZBTB33	Q86T24	672 aa		10.8	□□□□□ -0.68
SMARCA2-240	ENST00000635392	FCF1	Q9Y324	198 aa	Known RBP	10.8	□□□□□ -0.68
SMARCA2-240	ENST00000635392	MAP7D1	Q3KQU3	841 aa		10.79	□□□□□ -0.68
SMARCA2-240	ENST00000635392	ERFE	Q4G0M1	354 aa		10.79	□□□□□ -0.68
SMARCA2-240	ENST00000635392	ZNF511	Q8NB15	262 aa		10.79	□□□□□ -0.68
SMARCA2-240	ENST00000635392	CCDC85A	Q96PX6	553 aa	Predicted RBP	10.79	□□□□□ -0.68
SMARCA2-240	ENST00000635392	C1QTNF2	Q9BXJ5	285 aa		10.79	□□□□□ -0.68
SMARCA2-240	ENST00000635392	KCNC4	Q03721	635 aa		10.78	□□□□□ -0.68
SMARCA2-240	ENST00000635392	FAM69C	Q0P6D2	419 aa		10.78	□□□□□ -0.68
SMARCA2-240	ENST00000635392		Q6ZNB5	142 aa		10.78	□□□□□ -0.68
SMARCA2-240	ENST00000635392	SLAIN2	Q9P270	581 aa		10.78	□□□□□ -0.68
SMARCA2-240	ENST00000635392	NOVA2	Q9UNW9	492 aa	Known RBP	10.78	□□□□□ -0.68
SMARCA2-240	ENST00000635392	USP17L15	C9J2P7	530 aa		10.77	□□□□□ -0.69
SMARCA2-240	ENST00000635392	PATL2	C9JE40	543 aa	Known RBP	10.77	□□□□□ -0.69
SMARCA2-240	ENST00000635392	USP17L10	C9JJH3	530 aa		10.77	□□□□□ -0.69
SMARCA2-240	ENST00000635392	USP17L13	C9JLJ4	530 aa		10.77	□□□□□ -0.69
SMARCA2-240	ENST00000635392	USP17L12	C9JPN9	530 aa		10.77	□□□□□ -0.69
SMARCA2-240	ENST00000635392	USP17L11	C9JVI0	530 aa		10.77	□□□□□ -0.69
SMARCA2-240	ENST00000635392	USP17L21	D6R901	530 aa		10.77	□□□□□ -0.69
SMARCA2-240	ENST00000635392	USP17L18	D6R9N7	530 aa		10.77	□□□□□ -0.69
SMARCA2-240	ENST00000635392	USP17L22	D6RA61	530 aa		10.77	□□□□□ -0.69
SMARCA2-240	ENST00000635392	USP17L17	D6RBQ6	530 aa		10.77	□□□□□ -0.69
SMARCA2-240	ENST00000635392	USP17L19	D6RCP7	530 aa		10.77	□□□□□ -0.69
SMARCA2-240	ENST00000635392	USP17L20	D6RJB6	530 aa		10.77	□□□□□ -0.69
SMARCA2-240	ENST00000635392	GIGYF1	O75420	1035 aa	Predicted RBP	10.77	□□□□□ -0.69
SMARCA2-240	ENST00000635392	USP17L24	Q0WX57	530 aa		10.77	□□□□□ -0.69
SMARCA2-240	ENST00000635392	LINC01559	Q495D7	138 aa		10.77	□□□□□ -0.69
SMARCA2-240	ENST00000635392	BPHL	Q86WA6	291 aa	Predicted RBP	10.77	□□□□□ -0.69
SMARCA2-240	ENST00000635392	DZIP3	Q86Y13	1208 aa	Known RBP	10.77	□□□□□ -0.69
SMARCA2-240	ENST00000635392	CARD14	Q9BXL6	1004 aa		10.77	□□□□□ -0.69
SMARCA2-240	ENST00000635392	DKK1	O94907	266 aa		10.76	□□□□□ -0.69
SMARCA2-240	ENST00000635392	PHLDB3	Q6NSJ2	640 aa		10.76	□□□□□ -0.69
SMARCA2-240	ENST00000635392	MAGEB6P1	A0A0J9YX57	407 aa		10.75	□□□□□ -0.69
SMARCA2-240	ENST00000635392	ESPN	B1AK53	854 aa		10.75	□□□□□ -0.69
SMARCA2-240	ENST00000635392	ATP5J2-PTCD1	G3V325	749 aa		10.75	□□□□□ -0.69
SMARCA2-240	ENST00000635392	RASA1	P20936	1047 aa		10.75	□□□□□ -0.69
SMARCA2-240	ENST00000635392	SH3BP2	P78314	561 aa		10.75	□□□□□ -0.69
SMARCA2-240	ENST00000635392	ZBTB7B	O15156	539 aa	Predicted RBP	10.74	□□□□□ -0.69
SMARCA2-240	ENST00000635392	CLDN10	P78369	228 aa		10.74	□□□□□ -0.69
SMARCA2-240	ENST00000635392	PPEF1	O14829	653 aa	Predicted RBP	10.73	□□□□□ -0.69
SMARCA2-240	ENST00000635392	LARP1	Q6PKG0	1096 aa	Known RBP	10.73	□□□□□ -0.69
SMARCA2-240	ENST00000635392	TRMT44	Q8IYL2	757 aa	Known RBP	10.73	□□□□□ -0.69
SMARCA2-240	ENST00000635392	CDCA7	Q9BWT1	371 aa	Predicted RBP	10.73	□□□□□ -0.69
SMARCA2-240	ENST00000635392	EML3	Q32P44	896 aa		10.72	□□□□□ -0.69
SMARCA2-240	ENST00000635392	TMCO4	Q5TGY1	634 aa		10.72	□□□□□ -0.69
SMARCA2-240	ENST00000635392	ANKMY2	Q8IV38	441 aa		10.72	□□□□□ -0.69
SMARCA2-240	ENST00000635392	OGFOD1	Q8N543	542 aa		10.72	□□□□□ -0.69
SMARCA2-240	ENST00000635392	RGS22	Q8NE09	1264 aa		10.72	□□□□□ -0.69
SMARCA2-240	ENST00000635392	GNE	Q9Y223	722 aa	Known RBP	10.72	□□□□□ -0.69
SMARCA2-240	ENST00000635392	PLA2G2C	Q5R387	149 aa		10.71	□□□□□ -0.69
SMARCA2-240	ENST00000635392	IVNS1ABP	Q9Y6Y0	642 aa		10.71	□□□□□ -0.69
SMARCA2-240	ENST00000635392	RNF223	E7ERA6	249 aa		10.7	□□□□□ -0.7
SMARCA2-240	ENST00000635392	SSFA2	P28290	1259 aa		10.7	□□□□□ -0.7
SMARCA2-240	ENST00000635392	AGER	Q15109	404 aa		10.7	□□□□□ -0.7
SMARCA2-240	ENST00000635392	FAM200A	Q8TCP9	573 aa		10.7	□□□□□ -0.7
SMARCA2-240	ENST00000635392	CLP1	Q92989	425 aa	Known RBP	10.7	□□□□□ -0.7
SMARCA2-240	ENST00000635392	DOLK	Q9UPQ8	538 aa		10.7	□□□□□ -0.7
SMARCA2-240	ENST00000635392	KIAA1024	Q9UPX6	916 aa		10.7	□□□□□ -0.7
SMARCA2-240	ENST00000635392	LCE2B	O14633	110 aa		10.69	□□□□□ -0.7
SMARCA2-240	ENST00000635392	DPYD	Q12882	1025 aa		10.69	□□□□□ -0.7
SMARCA2-240	ENST00000635392	TXNDC2	Q86VQ3	553 aa		10.69	□□□□□ -0.7
SMARCA2-240	ENST00000635392	NOD1	Q9Y239	953 aa		10.69	□□□□□ -0.7
SMARCA2-240	ENST00000635392	MFAP1	P55081	439 aa	Known RBP	10.68	□□□□□ -0.7
SMARCA2-240	ENST00000635392	SKOR1	P84550	965 aa		10.68	□□□□□ -0.7
SMARCA2-240	ENST00000635392	TRIM50	Q86XT4	487 aa		10.68	□□□□□ -0.7
SMARCA2-240	ENST00000635392	SIX5	Q8N196	739 aa		10.68	□□□□□ -0.7
SMARCA2-240	ENST00000635392	LARGE2	Q8N3Y3	721 aa		10.68	□□□□□ -0.7
SMARCA2-240	ENST00000635392	SLC10A4	Q96EP9	437 aa		10.68	□□□□□ -0.7
SMARCA2-240	ENST00000635392	DNAAF2	Q9NVR5	837 aa	Known RBP	10.68	□□□□□ -0.7
SMARCA2-240	ENST00000635392	PCDHGA11	Q9Y5H2	935 aa		10.68	□□□□□ -0.7
SMARCA2-240	ENST00000635392	RNF20	Q5VTR2	975 aa		10.67	□□□□□ -0.7
SMARCA2-240	ENST00000635392	ANKLE1	Q8NAG6	615 aa		10.67	□□□□□ -0.7
SMARCA2-240	ENST00000635392	TRIM32	Q13049	653 aa		10.66	□□□□□ -0.7
SMARCA2-240	ENST00000635392	NPM2	Q86SE8	214 aa	Known RBP	10.66	□□□□□ -0.7
SMARCA2-240	ENST00000635392	SEPT12	Q8IYM1	358 aa		10.66	□□□□□ -0.7
SMARCA2-240	ENST00000635392	ATP1A2	P50993	1020 aa		10.65	□□□□□ -0.7
SMARCA2-240	ENST00000635392	GTF2I	P78347	998 aa		10.65	□□□□□ -0.7
SMARCA2-240	ENST00000635392	NBPF20	Q3BBV1	942 aa		10.65	□□□□□ -0.7
SMARCA2-240	ENST00000635392	OXLD1	Q5BKU9	147 aa		10.65	□□□□□ -0.7
SMARCA2-240	ENST00000635392	B4GALNT3	Q6L9W6	998 aa		10.65	□□□□□ -0.7
SMARCA2-240	ENST00000635392	ZNF594	Q96JF6	807 aa	Predicted RBP	10.65	□□□□□ -0.7
SMARCA2-240	ENST00000635392	CDV3	Q9UKY7	258 aa	Known RBP	10.65	□□□□□ -0.7
SMARCA2-240	ENST00000635392	CCDC125	Q86Z20	511 aa		10.64	□□□□□ -0.71
SMARCA2-240	ENST00000635392	MTMR7	Q9Y216	660 aa		10.64	□□□□□ -0.71
SMARCA2-240	ENST00000635392	WNT7B	P56706	349 aa		10.63	□□□□□ -0.71
SMARCA2-240	ENST00000635392	SWI5	Q1ZZU3	235 aa		10.63	□□□□□ -0.71
SMARCA2-240	ENST00000635392	MAP4K5	Q9Y4K4	846 aa		10.63	□□□□□ -0.71
SMARCA2-240	ENST00000635392	PCDHB11	Q9Y5F2	797 aa		10.63	□□□□□ -0.71
SMARCA2-240	ENST00000635392	GFRA3	O60609	400 aa		10.62	□□□□□ -0.71

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