RNA–Protein interactions for RNA: ENST00000629293.1

LINC00550-201, long intergenic non-protein coding RNA 550, humanhuman

TSL 1 (best) BASIC

Gene LINC00550, Length 3,434 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00550-201ENST00000629293 HFM1A2PYH4 1435 aa7□□□□□ -1.29
LINC00550-201ENST00000629293 PTCH1Q13635 1447 aa7□□□□□ -1.29
LINC00550-201ENST00000629293 PAK3O75914 559 aaPredicted RBP7□□□□□ -1.29
LINC00550-201ENST00000629293 CFAP70Q5T0N1 1121 aa7□□□□□ -1.29
LINC00550-201ENST00000629293 RSPH6AQ9H0K4 717 aa7□□□□□ -1.29
LINC00550-201ENST00000629293 TRPC6Q9Y210 931 aa7□□□□□ -1.29
LINC00550-201ENST00000629293 MPHOSPH9Q99550 1183 aa7□□□□□ -1.29
LINC00550-201ENST00000629293 NHSL1Q5SYE7 1610 aa7□□□□□ -1.29
LINC00550-201ENST00000629293 LRPPRCP42704 1394 aaKnown RBP7□□□□□ -1.29
LINC00550-201ENST00000629293 PRAM1Q96QH2 718 aa6.99□□□□□ -1.29
LINC00550-201ENST00000629293 FAM98CQ17RN3 349 aaKnown RBP6.99□□□□□ -1.29
LINC00550-201ENST00000629293 KIF1BO60333 1816 aa6.99□□□□□ -1.29
LINC00550-201ENST00000629293 GPHNQ9NQX3 736 aaPredicted RBP6.99□□□□□ -1.29
LINC00550-201ENST00000629293 TRAK1Q9UPV9 953 aa6.99□□□□□ -1.29
LINC00550-201ENST00000629293 BCL9LQ86UU0 1499 aa6.99□□□□□ -1.29
LINC00550-201ENST00000629293 MINK1Q8N4C8 1332 aaPredicted RBP6.99□□□□□ -1.29
LINC00550-201ENST00000629293 SPATA31A3Q5VYP0 1347 aa6.98□□□□□ -1.29
LINC00550-201ENST00000629293 ATRNO75882 1429 aa6.98□□□□□ -1.29
LINC00550-201ENST00000629293 USP35Q9P2H5 1018 aa6.98□□□□□ -1.29
LINC00550-201ENST00000629293 CCER1Q8TC90 406 aaPredicted RBP6.98□□□□□ -1.29
LINC00550-201ENST00000629293 RRBP1Q9P2E9 1410 aaKnown RBP6.97□□□□□ -1.29
LINC00550-201ENST00000629293 MYOM2P54296 1465 aa6.97□□□□□ -1.29
LINC00550-201ENST00000629293 PRKAR2AP13861 404 aaKnown RBP6.97□□□□□ -1.29
LINC00550-201ENST00000629293 PPP1R15BQ5SWA1 713 aa6.97□□□□□ -1.29
LINC00550-201ENST00000629293 KRT27Q7Z3Y8 459 aa6.97□□□□□ -1.29
LINC00550-201ENST00000629293 BTG4Q9NY30 223 aa6.97□□□□□ -1.29
LINC00550-201ENST00000629293 NUTM2GQ5VZR2 741 aa6.97□□□□□ -1.29
LINC00550-201ENST00000629293 CCDC125Q86Z20 511 aa6.97□□□□□ -1.29
LINC00550-201ENST00000629293 NGDNQ8NEJ9 315 aaKnown RBP6.97□□□□□ -1.29
LINC00550-201ENST00000629293 DPYSL4O14531 572 aa6.97□□□□□ -1.29
LINC00550-201ENST00000629293 RALGAPBQ86X10 1494 aa6.96□□□□□ -1.29
LINC00550-201ENST00000629293 FAM83GA6ND36 823 aa6.96□□□□□ -1.3
LINC00550-201ENST00000629293 AMHR2Q16671 573 aa6.96□□□□□ -1.3
LINC00550-201ENST00000629293 STRN4Q9NRL3 753 aa6.96□□□□□ -1.3
LINC00550-201ENST00000629293 ANKRD30BQ9BXX2 1392 aa6.96□□□□□ -1.3
LINC00550-201ENST00000629293 ZBTB7CA1YPR0 619 aa6.96□□□□□ -1.3
LINC00550-201ENST00000629293 PXDNQ92626 1479 aa6.96□□□□□ -1.3
LINC00550-201ENST00000629293 YTHDC2Q9H6S0 1430 aaKnown RBP6.95□□□□□ -1.3
LINC00550-201ENST00000629293 EN1Q05925 392 aaPredicted RBP6.95□□□□□ -1.3
LINC00550-201ENST00000629293 PRDM11Q9NQV5 511 aa6.95□□□□□ -1.3
LINC00550-201ENST00000629293 DHX57Q6P158 1386 aaKnown RBP6.95□□□□□ -1.3
LINC00550-201ENST00000629293 ABCC11Q96J66 1382 aa6.95□□□□□ -1.3
LINC00550-201ENST00000629293 BAG6P46379 1132 aa6.95□□□□□ -1.3
LINC00550-201ENST00000629293 CHRNA2Q15822 529 aa6.95□□□□□ -1.3
LINC00550-201ENST00000629293 DSG2Q14126 1118 aa6.95□□□□□ -1.3
LINC00550-201ENST00000629293 VPS72Q15906 364 aa6.95□□□□□ -1.3
LINC00550-201ENST00000629293 PARP9Q8IXQ6 854 aa6.95□□□□□ -1.3
LINC00550-201ENST00000629293 BLMP54132 1417 aaPredicted RBP6.94□□□□□ -1.3
LINC00550-201ENST00000629293 ZC3H6P61129 1189 aaKnown RBP6.94□□□□□ -1.3
LINC00550-201ENST00000629293 R3HDM1Q15032 1099 aaKnown RBP6.94□□□□□ -1.3
LINC00550-201ENST00000629293 DCAF11Q8TEB1 546 aa6.94□□□□□ -1.3
LINC00550-201ENST00000629293 C14orf93Q9H972 538 aaKnown RBP6.94□□□□□ -1.3
LINC00550-201ENST00000629293 GPRASP1Q5JY77 1395 aa6.93□□□□□ -1.3
LINC00550-201ENST00000629293 PRIM1P49642 420 aaKnown RBP6.93□□□□□ -1.3
LINC00550-201ENST00000629293 TNS3Q68CZ2 1445 aa6.93□□□□□ -1.3
LINC00550-201ENST00000629293 CDC42BPGQ6DT37 1551 aa6.93□□□□□ -1.3
LINC00550-201ENST00000629293 FECHP22830 423 aa6.93□□□□□ -1.3
LINC00550-201ENST00000629293 CCDC102AQ96A19 550 aa6.93□□□□□ -1.3
LINC00550-201ENST00000629293 SPATA31E1Q6ZUB1 1445 aa6.92□□□□□ -1.3
LINC00550-201ENST00000629293 KIF3CO14782 793 aa6.92□□□□□ -1.3
LINC00550-201ENST00000629293 TRIM37O94972 964 aa6.92□□□□□ -1.3
LINC00550-201ENST00000629293 PHF12Q96QT6 1004 aa6.92□□□□□ -1.3
LINC00550-201ENST00000629293 UTRNP46939 3433 aa6.92□□□□□ -1.3
LINC00550-201ENST00000629293 SLIT2O94813 1529 aa6.92□□□□□ -1.3
LINC00550-201ENST00000629293 ARHGEF10O15013 1369 aa6.92□□□□□ -1.3
LINC00550-201ENST00000629293 ZNF316A6NFI3 1004 aaPredicted RBP6.92□□□□□ -1.3
LINC00550-201ENST00000629293 EVA1CP58658 441 aa6.92□□□□□ -1.3
LINC00550-201ENST00000629293 KRI1Q8N9T8 703 aaKnown RBP6.92□□□□□ -1.3
LINC00550-201ENST00000629293 PPLO60437 1756 aa6.91□□□□□ -1.3
LINC00550-201ENST00000629293 PIK3C2GO75747 1445 aa6.91□□□□□ -1.3
LINC00550-201ENST00000629293 OSBPP22059 807 aa6.91□□□□□ -1.3
LINC00550-201ENST00000629293 MAP2K5Q13163 448 aa6.91□□□□□ -1.3
LINC00550-201ENST00000629293 GOPCQ9HD26 462 aa6.91□□□□□ -1.3
LINC00550-201ENST00000629293 GLI3P10071 1580 aa6.91□□□□□ -1.3
LINC00550-201ENST00000629293 ACIN1Q9UKV3 1341 aaKnown RBP6.91□□□□□ -1.3
LINC00550-201ENST00000629293 IRF6O14896 467 aa6.91□□□□□ -1.3
LINC00550-201ENST00000629293 EZH2Q15910 746 aaKnown RBP6.91□□□□□ -1.3
LINC00550-201ENST00000629293 TECPR2O15040 1411 aa6.9□□□□□ -1.3
LINC00550-201ENST00000629293 PRR36Q9H6K5 1346 aa6.9□□□□□ -1.3
LINC00550-201ENST00000629293 SPDYE16A6NNV3 312 aaPredicted RBP6.9□□□□□ -1.3
LINC00550-201ENST00000629293 APBA3O96018 575 aa6.9□□□□□ -1.3
LINC00550-201ENST00000629293 WASLO00401 505 aaPredicted RBP6.9□□□□□ -1.31
LINC00550-201ENST00000629293 FOXK1P85037 733 aa6.9□□□□□ -1.31
LINC00550-201ENST00000629293 PDE3BQ13370 1112 aa6.9□□□□□ -1.31
LINC00550-201ENST00000629293 OXER1Q8TDS5 423 aa6.89□□□□□ -1.31
LINC00550-201ENST00000629293 NECTIN2Q92692 538 aa6.89□□□□□ -1.31
LINC00550-201ENST00000629293 REPIN1Q9BWE0 567 aaKnown RBP6.89□□□□□ -1.31
LINC00550-201ENST00000629293 USP32Q8NFA0 1604 aa6.89□□□□□ -1.31
LINC00550-201ENST00000629293 KIAA0232Q92628 1395 aa6.89□□□□□ -1.31
LINC00550-201ENST00000629293 COL22A1Q8NFW1 1626 aaPredicted RBP6.89□□□□□ -1.31
LINC00550-201ENST00000629293 NUDT16Q96DE0 195 aaKnown RBP6.89□□□□□ -1.31
LINC00550-201ENST00000629293 TMEM106CQ9BVX2 250 aa6.89□□□□□ -1.31
LINC00550-201ENST00000629293 SBNO1A3KN83 1393 aa6.89□□□□□ -1.31
LINC00550-201ENST00000629293 PRAG1Q86YV5 1406 aa6.88□□□□□ -1.31
LINC00550-201ENST00000629293 DPY19L2Q6NUT2 758 aa6.88□□□□□ -1.31
LINC00550-201ENST00000629293 ABTB2Q8N961 1025 aa6.88□□□□□ -1.31
LINC00550-201ENST00000629293 RGPD8O14715 1765 aaPredicted RBP6.88□□□□□ -1.31
LINC00550-201ENST00000629293 MS4A1P11836 297 aa6.88□□□□□ -1.31
LINC00550-201ENST00000629293 SIRT1Q96EB6 747 aa6.88□□□□□ -1.31
LINC00550-201ENST00000629293 TMUB1Q9BVT8 246 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms