RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 RXRBP28702 533 aa27.84■■■□□ 2.05
PTCD3-220ENST00000627371 RBM6P78332 1123 aaKnown RBP27.84■■■□□ 2.05
PTCD3-220ENST00000627371 CDK12Q9NYV4 1490 aaPredicted RBP27.83■■■□□ 2.04
PTCD3-220ENST00000627371 ILDR2Q71H61 639 aa27.82■■■□□ 2.04
PTCD3-220ENST00000627371 GJD4Q96KN9 370 aaPredicted RBP27.82■■■□□ 2.04
PTCD3-220ENST00000627371 AMER1Q5JTC6 1135 aaPredicted RBP27.81■■■□□ 2.04
PTCD3-220ENST00000627371 AXIN2Q9Y2T1 843 aa27.81■■■□□ 2.04
PTCD3-220ENST00000627371 FBLN1P23142 703 aa27.8■■■□□ 2.04
PTCD3-220ENST00000627371 STRN4Q9NRL3 753 aa27.8■■■□□ 2.04
PTCD3-220ENST00000627371 MAP3K19Q56UN5 1328 aa27.8■■■□□ 2.04
PTCD3-220ENST00000627371 EVA1CP58658 441 aa27.79■■■□□ 2.04
PTCD3-220ENST00000627371 PEAK1Q9H792 1746 aa27.78■■■□□ 2.04
PTCD3-220ENST00000627371 BLMP54132 1417 aaPredicted RBP27.78■■■□□ 2.04
PTCD3-220ENST00000627371 RTL1A6NKG5 1358 aa27.78■■■□□ 2.04
PTCD3-220ENST00000627371 CCDC9Q9Y3X0 531 aaKnown RBP27.78■■■□□ 2.04
PTCD3-220ENST00000627371 SPATA31A5Q5VU36 1347 aa27.77■■■□□ 2.04
PTCD3-220ENST00000627371 SPATA31A7Q8IWB4 1347 aa27.77■■■□□ 2.04
PTCD3-220ENST00000627371 RRS1Q15050 365 aaKnown RBP27.77■■■□□ 2.04
PTCD3-220ENST00000627371 NPC1L1Q9UHC9 1359 aa27.76■■■□□ 2.03
PTCD3-220ENST00000627371 FAM208AQ9UK61 1670 aaKnown RBP27.76■■■□□ 2.03
PTCD3-220ENST00000627371 RGS12O14924 1447 aa27.75■■■□□ 2.03
PTCD3-220ENST00000627371 LARP1Q6PKG0 1096 aaKnown RBP27.75■■■□□ 2.03
PTCD3-220ENST00000627371 IP6K1Q92551 441 aa27.75■■■□□ 2.03
PTCD3-220ENST00000627371 KIF24Q5T7B8 1368 aa27.74■■■□□ 2.03
PTCD3-220ENST00000627371 AMPHP49418 695 aa27.74■■■□□ 2.03
PTCD3-220ENST00000627371 CRB1P82279 1406 aa27.74■■■□□ 2.03
PTCD3-220ENST00000627371 SPATA31A1Q5TZJ5 1347 aa27.73■■■□□ 2.03
PTCD3-220ENST00000627371 WDR17Q8IZU2 1322 aa27.73■■■□□ 2.03
PTCD3-220ENST00000627371 ERBB3P21860 1342 aa27.72■■■□□ 2.03
PTCD3-220ENST00000627371 WNK3Q9BYP7 1800 aa27.72■■■□□ 2.03
PTCD3-220ENST00000627371 HOXC9P31274 260 aa27.72■■■□□ 2.03
PTCD3-220ENST00000627371 MORC1Q86VD1 984 aa27.72■■■□□ 2.03
PTCD3-220ENST00000627371 FLT4P35916 1363 aa27.71■■■□□ 2.03
PTCD3-220ENST00000627371 THSD7AQ9UPZ6 1657 aa27.7■■■□□ 2.02
PTCD3-220ENST00000627371 BRWD3Q6RI45 1802 aa27.69■■■□□ 2.02
PTCD3-220ENST00000627371 TNNT2P45379 298 aaPredicted RBP27.69■■■□□ 2.02
PTCD3-220ENST00000627371 CC2D1BQ5T0F9 858 aaKnown RBP27.69■■■□□ 2.02
PTCD3-220ENST00000627371 EMILIN1Q9Y6C2 1016 aa27.69■■■□□ 2.02
PTCD3-220ENST00000627371 CSB-PGBD3P0DP91 1061 aa27.68■■■□□ 2.02
PTCD3-220ENST00000627371 TOM1L2Q6ZVM7 507 aa27.68■■■□□ 2.02
PTCD3-220ENST00000627371 ANKRD24Q8TF21 1146 aa27.68■■■□□ 2.02
PTCD3-220ENST00000627371 RGPD2P0DJD1 1756 aa27.68■■■□□ 2.02
PTCD3-220ENST00000627371 SMG6Q86US8 1419 aaKnown RBP27.67■■■□□ 2.02
PTCD3-220ENST00000627371 ONECUT3O60422 494 aaPredicted RBP27.67■■■□□ 2.02
PTCD3-220ENST00000627371 POLKQ9UBT6 870 aa27.67■■■□□ 2.02
PTCD3-220ENST00000627371 INSRP06213 1382 aa27.66■■■□□ 2.02
PTCD3-220ENST00000627371 USP35Q9P2H5 1018 aa27.66■■■□□ 2.02
PTCD3-220ENST00000627371 FAM98CQ17RN3 349 aaKnown RBP27.65■■■□□ 2.02
PTCD3-220ENST00000627371 TCP11L2Q8N4U5 519 aa27.65■■■□□ 2.02
PTCD3-220ENST00000627371 THRAP3Q9Y2W1 955 aaKnown RBP27.65■■■□□ 2.02
PTCD3-220ENST00000627371 BARGINQ6ZT62 677 aa27.64■■■□□ 2.02
PTCD3-220ENST00000627371 PARP4Q9UKK3 1724 aaKnown RBP27.64■■■□□ 2.01
PTCD3-220ENST00000627371 DDX10Q13206 875 aaKnown RBP27.63■■■□□ 2.01
PTCD3-220ENST00000627371 CARD10Q9BWT7 1032 aa27.63■■■□□ 2.01
PTCD3-220ENST00000627371 ZNF316A6NFI3 1004 aaPredicted RBP27.62■■■□□ 2.01
PTCD3-220ENST00000627371 PPM1GO15355 546 aaPredicted RBP27.62■■■□□ 2.01
PTCD3-220ENST00000627371 HSP90AB2PQ58FF8 381 aa27.62■■■□□ 2.01
PTCD3-220ENST00000627371 SEPT12Q8IYM1 358 aa27.61■■■□□ 2.01
PTCD3-220ENST00000627371 LTV1Q96GA3 475 aaPredicted RBP27.61■■■□□ 2.01
PTCD3-220ENST00000627371 CNGB1Q14028 1251 aaPredicted RBP27.59■■■□□ 2.01
PTCD3-220ENST00000627371 NLRP2Q9NX02 1062 aa27.59■■■□□ 2.01
PTCD3-220ENST00000627371 LRRC37A3O60309 1634 aa27.57■■■□□ 2
PTCD3-220ENST00000627371 A0A0G2JS52 829 aa27.57■■■□□ 2
PTCD3-220ENST00000627371 MYT1Q01538 1121 aa27.57■■■□□ 2
PTCD3-220ENST00000627371 DISP2A7MBM2 1401 aa27.56■■■□□ 2
PTCD3-220ENST00000627371 CDCA7Q9BWT1 371 aaPredicted RBP27.52■■■□□ 2
PTCD3-220ENST00000627371 EP400Q96L91 3159 aa27.52■■■□□ 2
PTCD3-220ENST00000627371 MTHFSP49914 203 aa27.51■■□□□ 1.99
PTCD3-220ENST00000627371 PARD3Q8TEW0 1356 aa27.5■■□□□ 1.99
PTCD3-220ENST00000627371 NBPF6Q5VWK0 638 aa27.5■■□□□ 1.99
PTCD3-220ENST00000627371 NBPF4Q96M43 638 aa27.5■■□□□ 1.99
PTCD3-220ENST00000627371 EIF4A2Q14240 407 aaKnown RBP27.49■■□□□ 1.99
PTCD3-220ENST00000627371 KRT27Q7Z3Y8 459 aa27.49■■□□□ 1.99
PTCD3-220ENST00000627371 NCAPD2Q15021 1401 aa27.49■■□□□ 1.99
PTCD3-220ENST00000627371 RGPD1P0DJD0 1748 aa27.47■■□□□ 1.99
PTCD3-220ENST00000627371 IL2RBP14784 551 aa27.47■■□□□ 1.99
PTCD3-220ENST00000627371 TNS2Q63HR2 1409 aa27.45■■□□□ 1.98
PTCD3-220ENST00000627371 SOCS7O14512 581 aa27.45■■□□□ 1.98
PTCD3-220ENST00000627371 COL3A1P02461 1466 aaPredicted RBP27.44■■□□□ 1.98
PTCD3-220ENST00000627371 PPP2R1AP30153 589 aa27.44■■□□□ 1.98
PTCD3-220ENST00000627371 DDB1Q16531 1140 aa27.44■■□□□ 1.98
PTCD3-220ENST00000627371 USHBP1Q8N6Y0 703 aa27.44■■□□□ 1.98
PTCD3-220ENST00000627371 EYA1Q99502 592 aa27.44■■□□□ 1.98
PTCD3-220ENST00000627371 MEGF6O75095 1541 aa27.44■■□□□ 1.98
PTCD3-220ENST00000627371 PDE3BQ13370 1112 aa27.43■■□□□ 1.98
PTCD3-220ENST00000627371 SHANK3Q9BYB0 1731 aa27.43■■□□□ 1.98
PTCD3-220ENST00000627371 IGSF1Q8N6C5 1336 aa27.41■■□□□ 1.98
PTCD3-220ENST00000627371 IL13P35225 146 aa27.4■■□□□ 1.98
PTCD3-220ENST00000627371 RALBP1Q15311 655 aa27.4■■□□□ 1.98
PTCD3-220ENST00000627371 OVOS2A0A0G2JMS6 1433 aa27.4■■□□□ 1.98
PTCD3-220ENST00000627371 PKD1L3Q7Z443 1732 aa27.39■■□□□ 1.98
PTCD3-220ENST00000627371 EXOC5O00471 708 aa27.39■■□□□ 1.98
PTCD3-220ENST00000627371 RAPGEF4Q8WZA2 1011 aa27.37■■□□□ 1.97
PTCD3-220ENST00000627371 SBF2Q86WG5 1849 aa27.37■■□□□ 1.97
PTCD3-220ENST00000627371 DIAPH1O60610 1272 aaKnown RBP27.36■■□□□ 1.97
PTCD3-220ENST00000627371 FAM182BQ5T319 152 aa27.36■■□□□ 1.97
PTCD3-220ENST00000627371 TATP17735 454 aaPredicted RBP27.35■■□□□ 1.97
PTCD3-220ENST00000627371 CFAP53Q96M91 514 aa27.35■■□□□ 1.97
PTCD3-220ENST00000627371 FAM196AQ6ZSG2 479 aa27.33■■□□□ 1.97
PTCD3-220ENST00000627371 MARCH10Q8NA82 808 aaPredicted RBP27.33■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms