RNA–Protein interactions for RNA: ENST00000623985.3

LINC00643-206, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 864 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-206ENST00000623985 OVOS2Q6IE36 1432 aa20.82■□□□□ 0.92
LINC00643-206ENST00000623985 EVA1CP58658 441 aa20.82■□□□□ 0.92
LINC00643-206ENST00000623985 SLC12A5Q9H2X9 1139 aa20.82■□□□□ 0.92
LINC00643-206ENST00000623985 TMF1P82094 1093 aa20.8■□□□□ 0.92
LINC00643-206ENST00000623985 LARP1Q6PKG0 1096 aaKnown RBP20.8■□□□□ 0.92
LINC00643-206ENST00000623985 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.8■□□□□ 0.92
LINC00643-206ENST00000623985 CCER1Q8TC90 406 aaPredicted RBP20.8■□□□□ 0.92
LINC00643-206ENST00000623985 ANKRD36BQ8N2N9 1353 aa20.8■□□□□ 0.92
LINC00643-206ENST00000623985 PEAK1Q9H792 1746 aa20.79■□□□□ 0.92
LINC00643-206ENST00000623985 BARGINQ6ZT62 677 aa20.79■□□□□ 0.92
LINC00643-206ENST00000623985 ZBTB7CA1YPR0 619 aa20.78■□□□□ 0.92
LINC00643-206ENST00000623985 THRAP3Q9Y2W1 955 aaKnown RBP20.78■□□□□ 0.92
LINC00643-206ENST00000623985 ANKRD26Q9UPS8 1709 aa20.78■□□□□ 0.92
LINC00643-206ENST00000623985 ARHGEF25Q86VW2 580 aa20.77■□□□□ 0.92
LINC00643-206ENST00000623985 USP35Q9P2H5 1018 aa20.77■□□□□ 0.92
LINC00643-206ENST00000623985 NME9Q86XW9 330 aa20.76■□□□□ 0.91
LINC00643-206ENST00000623985 TCP11L2Q8N4U5 519 aa20.76■□□□□ 0.91
LINC00643-206ENST00000623985 RGPD2P0DJD1 1756 aa20.75■□□□□ 0.91
LINC00643-206ENST00000623985 RREB1Q92766 1687 aa20.75■□□□□ 0.91
LINC00643-206ENST00000623985 SOX12O15370 315 aa20.75■□□□□ 0.91
LINC00643-206ENST00000623985 CDCA8Q53HL2 280 aa20.75■□□□□ 0.91
LINC00643-206ENST00000623985 WDR17Q8IZU2 1322 aa20.75■□□□□ 0.91
LINC00643-206ENST00000623985 RGPD3A6NKT7 1758 aaPredicted RBP20.74■□□□□ 0.91
LINC00643-206ENST00000623985 RGPD4Q7Z3J3 1758 aa20.74■□□□□ 0.91
LINC00643-206ENST00000623985 ZRANB1Q9UGI0 708 aa20.74■□□□□ 0.91
LINC00643-206ENST00000623985 SF3B2Q13435 895 aaKnown RBP20.73■□□□□ 0.91
LINC00643-206ENST00000623985 AXIN2Q9Y2T1 843 aa20.72■□□□□ 0.91
LINC00643-206ENST00000623985 DISP2A7MBM2 1401 aa20.7■□□□□ 0.9
LINC00643-206ENST00000623985 TOM1L2Q6ZVM7 507 aa20.69■□□□□ 0.9
LINC00643-206ENST00000623985 NUP188Q5SRE5 1749 aa20.69■□□□□ 0.9
LINC00643-206ENST00000623985 MAP2P11137 1827 aaKnown RBP20.69■□□□□ 0.9
LINC00643-206ENST00000623985 FAM182BQ5T319 152 aa20.68■□□□□ 0.9
LINC00643-206ENST00000623985 CCDC7Q96M83 1385 aa20.67■□□□□ 0.9
LINC00643-206ENST00000623985 PDE3BQ13370 1112 aa20.66■□□□□ 0.9
LINC00643-206ENST00000623985 FAM196AQ6ZSG2 479 aa20.66■□□□□ 0.9
LINC00643-206ENST00000623985 ERBB3P21860 1342 aa20.66■□□□□ 0.9
LINC00643-206ENST00000623985 OVOS2A0A0G2JMS6 1433 aa20.66■□□□□ 0.9
LINC00643-206ENST00000623985 CSB-PGBD3P0DP91 1061 aa20.65■□□□□ 0.9
LINC00643-206ENST00000623985 BAG6P46379 1132 aa20.65■□□□□ 0.9
LINC00643-206ENST00000623985 DEFB132Q7Z7B7 95 aa20.65■□□□□ 0.9
LINC00643-206ENST00000623985 COG3Q96JB2 828 aa20.65■□□□□ 0.9
LINC00643-206ENST00000623985 CARD10Q9BWT7 1032 aa20.65■□□□□ 0.9
LINC00643-206ENST00000623985 SHANK3Q9BYB0 1731 aa20.64■□□□□ 0.9
LINC00643-206ENST00000623985 NHSQ6T4R5 1651 aa20.64■□□□□ 0.9
LINC00643-206ENST00000623985 TNS2Q63HR2 1409 aa20.64■□□□□ 0.89
LINC00643-206ENST00000623985 CDCA7Q9BWT1 371 aaPredicted RBP20.63■□□□□ 0.89
LINC00643-206ENST00000623985 NSD3Q9BZ95 1437 aa20.62■□□□□ 0.89
LINC00643-206ENST00000623985 RTL1A6NKG5 1358 aa20.62■□□□□ 0.89
LINC00643-206ENST00000623985 EIF4G2P78344 907 aaKnown RBP eCLIP20.62■□□□□ 0.89
LINC00643-206ENST00000623985 C11orf95C9JLR9 678 aaPredicted RBP20.61■□□□□ 0.89
LINC00643-206ENST00000623985 DDB1Q16531 1140 aa20.6■□□□□ 0.89
LINC00643-206ENST00000623985 KAT6BQ8WYB5 2073 aa20.6■□□□□ 0.89
LINC00643-206ENST00000623985 LRP5O75197 1615 aa20.59■□□□□ 0.89
LINC00643-206ENST00000623985 BCL9O00512 1426 aa20.59■□□□□ 0.89
LINC00643-206ENST00000623985 PARD3Q8TEW0 1356 aa20.59■□□□□ 0.89
LINC00643-206ENST00000623985 FYB1O15117 783 aa20.58■□□□□ 0.89
LINC00643-206ENST00000623985 TRIM37O94972 964 aa20.58■□□□□ 0.89
LINC00643-206ENST00000623985 HSPA5P11021 654 aaKnown RBP20.58■□□□□ 0.89
LINC00643-206ENST00000623985 ANKRD24Q8TF21 1146 aa20.58■□□□□ 0.89
LINC00643-206ENST00000623985 IP6K1Q92551 441 aa20.58■□□□□ 0.89
LINC00643-206ENST00000623985 SRCAPQ6ZRS2 3230 aa20.58■□□□□ 0.88
LINC00643-206ENST00000623985 MAP3K19Q56UN5 1328 aa20.57■□□□□ 0.88
LINC00643-206ENST00000623985 GGNBP2Q9H3C7 697 aa20.57■□□□□ 0.88
LINC00643-206ENST00000623985 BTAF1O14981 1849 aa20.57■□□□□ 0.88
LINC00643-206ENST00000623985 DOT1LQ8TEK3 1739 aa20.56■□□□□ 0.88
LINC00643-206ENST00000623985 EN1Q05925 392 aaPredicted RBP20.55■□□□□ 0.88
LINC00643-206ENST00000623985 NLRP2Q9NX02 1062 aa20.55■□□□□ 0.88
LINC00643-206ENST00000623985 HOXC9P31274 260 aa20.54■□□□□ 0.88
LINC00643-206ENST00000623985 CARD14Q9BXL6 1004 aa20.54■□□□□ 0.88
LINC00643-206ENST00000623985 KIF24Q5T7B8 1368 aa20.54■□□□□ 0.88
LINC00643-206ENST00000623985 SMG6Q86US8 1419 aaKnown RBP20.53■□□□□ 0.88
LINC00643-206ENST00000623985 AMPHP49418 695 aa20.52■□□□□ 0.88
LINC00643-206ENST00000623985 PKD1L3Q7Z443 1732 aa20.52■□□□□ 0.88
LINC00643-206ENST00000623985 FLT4P35916 1363 aa20.51■□□□□ 0.87
LINC00643-206ENST00000623985 APBA3O96018 575 aa20.51■□□□□ 0.87
LINC00643-206ENST00000623985 IL2RBP14784 551 aa20.51■□□□□ 0.87
LINC00643-206ENST00000623985 CGNL1Q0VF96 1302 aa20.51■□□□□ 0.87
LINC00643-206ENST00000623985 EXOC5O00471 708 aa20.5■□□□□ 0.87
LINC00643-206ENST00000623985 RRS1Q15050 365 aaKnown RBP20.5■□□□□ 0.87
LINC00643-206ENST00000623985 MARCH10Q8NA82 808 aaPredicted RBP20.5■□□□□ 0.87
LINC00643-206ENST00000623985 POLR3GLQ9BT43 218 aa20.5■□□□□ 0.87
LINC00643-206ENST00000623985 FBLN1P23142 703 aa20.49■□□□□ 0.87
LINC00643-206ENST00000623985 EZH2Q15910 746 aaKnown RBP20.49■□□□□ 0.87
LINC00643-206ENST00000623985 CAMKK2Q96RR4 588 aa20.49■□□□□ 0.87
LINC00643-206ENST00000623985 LTV1Q96GA3 475 aaPredicted RBP20.48■□□□□ 0.87
LINC00643-206ENST00000623985 INSRP06213 1382 aa20.47■□□□□ 0.87
LINC00643-206ENST00000623985 MEGF6O75095 1541 aa20.46■□□□□ 0.87
LINC00643-206ENST00000623985 LY75O60449 1722 aa20.45■□□□□ 0.86
LINC00643-206ENST00000623985 BCL11BQ9C0K0 894 aaPredicted RBP20.45■□□□□ 0.86
LINC00643-206ENST00000623985 NSD2O96028 1365 aa20.45■□□□□ 0.86
LINC00643-206ENST00000623985 ITGB4P16144 1822 aa20.44■□□□□ 0.86
LINC00643-206ENST00000623985 CASZ1Q86V15 1759 aa20.43■□□□□ 0.86
LINC00643-206ENST00000623985 NCAPD2Q15021 1401 aa20.42■□□□□ 0.86
LINC00643-206ENST00000623985 PAPPAQ13219 1627 aa20.42■□□□□ 0.86
LINC00643-206ENST00000623985 QSER1Q2KHR3 1735 aa20.41■□□□□ 0.86
LINC00643-206ENST00000623985 PLSCR1O15162 318 aa20.41■□□□□ 0.86
LINC00643-206ENST00000623985 TOGARAM1Q9Y4F4 1720 aa20.41■□□□□ 0.86
LINC00643-206ENST00000623985 PSDA5PKW4 1024 aaPredicted RBP20.4■□□□□ 0.86
LINC00643-206ENST00000623985 HSP90AB2PQ58FF8 381 aa20.4■□□□□ 0.86
LINC00643-206ENST00000623985 PANK3Q9H999 370 aa20.4■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms