RNA–Protein interactions for RNA: ENST00000622226.1

PDLIM2-220, Transcript of PDZ and LIM domain 2, humanhuman

Gene PDLIM2, Length 6,559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-220ENST00000622226 SURF6O75683 361 aaKnown RBP18.04■□□□□ 0.48
PDLIM2-220ENST00000622226 LUC7LQ9NQ29 371 aaKnown RBP18.03■□□□□ 0.48
PDLIM2-220ENST00000622226 RBM42Q9BTD8 480 aaKnown RBP18.03■□□□□ 0.48
PDLIM2-220ENST00000622226 CAMK4Q16566 473 aa18.03■□□□□ 0.48
PDLIM2-220ENST00000622226 K7ELQ4 463 aaPredicted RBP18.03■□□□□ 0.48
PDLIM2-220ENST00000622226 PIP4K2AP48426 406 aaPredicted RBP18.03■□□□□ 0.48
PDLIM2-220ENST00000622226 BCCIPQ9P287 314 aaKnown RBP eCLIP18.03■□□□□ 0.48
PDLIM2-220ENST00000622226 CALCOCO1Q9P1Z2 691 aa18.02■□□□□ 0.48
PDLIM2-220ENST00000622226 USP47Q96K76 1375 aa18.02■□□□□ 0.48
PDLIM2-220ENST00000622226 SRRTQ9BXP5 876 aaKnown RBP18.02■□□□□ 0.48
PDLIM2-220ENST00000622226 MCM4P33991 863 aa18.02■□□□□ 0.48
PDLIM2-220ENST00000622226 SART3Q15020 963 aaKnown RBP18.02■□□□□ 0.48
PDLIM2-220ENST00000622226 PROSER2Q86WR7 435 aaPredicted RBP18.02■□□□□ 0.48
PDLIM2-220ENST00000622226 ARHGAP29Q52LW3 1261 aa18.01■□□□□ 0.47
PDLIM2-220ENST00000622226 KRT85P78386 507 aa18.01■□□□□ 0.47
PDLIM2-220ENST00000622226 CBFA2T2O43439 604 aa18.01■□□□□ 0.47
PDLIM2-220ENST00000622226 MCM2P49736 904 aa18.01■□□□□ 0.47
PDLIM2-220ENST00000622226 IQCEQ6IPM2 695 aa18.01■□□□□ 0.47
PDLIM2-220ENST00000622226 EPB41L2O43491 1005 aaKnown RBP18.01■□□□□ 0.47
PDLIM2-220ENST00000622226 LARP1BQ659C4 914 aaKnown RBP18.01■□□□□ 0.47
PDLIM2-220ENST00000622226 UPF3BQ9BZI7 483 aaKnown RBP18.01■□□□□ 0.47
PDLIM2-220ENST00000622226 URI1O94763 535 aaPredicted RBP18■□□□□ 0.47
PDLIM2-220ENST00000622226 SLC26A8Q96RN1 970 aa18■□□□□ 0.47
PDLIM2-220ENST00000622226 PTPN14Q15678 1187 aa18■□□□□ 0.47
PDLIM2-220ENST00000622226 PPP4R3BQ5MIZ7 849 aa18■□□□□ 0.47
PDLIM2-220ENST00000622226 WDR33Q9C0J8 1336 aaKnown RBP18■□□□□ 0.47
PDLIM2-220ENST00000622226 NUP62CLQ9H1M0 184 aa18■□□□□ 0.47
PDLIM2-220ENST00000622226 SSR1P43307 286 aaKnown RBP18■□□□□ 0.47
PDLIM2-220ENST00000622226 DNA2P51530 1060 aa18■□□□□ 0.47
PDLIM2-220ENST00000622226 SPATA32Q96LK8 384 aa17.99■□□□□ 0.47
PDLIM2-220ENST00000622226 CEP63Q96MT8 703 aa17.99■□□□□ 0.47
PDLIM2-220ENST00000622226 DACH1Q9UI36 760 aa17.99■□□□□ 0.47
PDLIM2-220ENST00000622226 STIM1Q13586 685 aa17.99■□□□□ 0.47
PDLIM2-220ENST00000622226 UBE4AQ14139 1066 aa17.99■□□□□ 0.47
PDLIM2-220ENST00000622226 CFAP100Q494V2 611 aa17.99■□□□□ 0.47
PDLIM2-220ENST00000622226 JMYQ8N9B5 988 aa17.98■□□□□ 0.47
PDLIM2-220ENST00000622226 CCDC148Q8NFR7 591 aa17.98■□□□□ 0.47
PDLIM2-220ENST00000622226 BACH2Q9BYV9 841 aa17.98■□□□□ 0.47
PDLIM2-220ENST00000622226 GNAI1P63096 354 aa17.98■□□□□ 0.47
PDLIM2-220ENST00000622226 CYP46A1Q9Y6A2 500 aa17.98■□□□□ 0.47
PDLIM2-220ENST00000622226 PRDM2Q13029 1718 aa17.97■□□□□ 0.47
PDLIM2-220ENST00000622226 TRMT1Q9NXH9 659 aaKnown RBP17.97■□□□□ 0.47
PDLIM2-220ENST00000622226 FHOD3Q2V2M9 1422 aa17.97■□□□□ 0.47
PDLIM2-220ENST00000622226 TAF4BQ92750 862 aa17.97■□□□□ 0.47
PDLIM2-220ENST00000622226 CCDC97Q96F63 343 aaPredicted RBP17.97■□□□□ 0.47
PDLIM2-220ENST00000622226 GOPCQ9HD26 462 aa17.97■□□□□ 0.47
PDLIM2-220ENST00000622226 SERPINA10Q9UK55 444 aa17.97■□□□□ 0.47
PDLIM2-220ENST00000622226 CEP57L1Q8IYX8 460 aa17.97■□□□□ 0.47
PDLIM2-220ENST00000622226 EVC2Q86UK5 1308 aa17.96■□□□□ 0.47
PDLIM2-220ENST00000622226 RAI14Q9P0K7 980 aa17.96■□□□□ 0.47
PDLIM2-220ENST00000622226 SSBP05455 408 aaKnown RBP eCLIP17.96■□□□□ 0.47
PDLIM2-220ENST00000622226 EIF5P55010 431 aaKnown RBP17.96■□□□□ 0.47
PDLIM2-220ENST00000622226 CASQ1P31415 396 aa17.96■□□□□ 0.47
PDLIM2-220ENST00000622226 DDX54Q8TDD1 881 aaKnown RBP17.96■□□□□ 0.47
PDLIM2-220ENST00000622226 BBXQ8WY36 941 aaPredicted RBP17.96■□□□□ 0.47
PDLIM2-220ENST00000622226 ATP2B2Q01814 1243 aa17.95■□□□□ 0.46
PDLIM2-220ENST00000622226 C11orf95C9JLR9 678 aaPredicted RBP17.95■□□□□ 0.46
PDLIM2-220ENST00000622226 DHX57Q6P158 1386 aaKnown RBP17.95■□□□□ 0.46
PDLIM2-220ENST00000622226 DHX8Q14562 1220 aaKnown RBP17.95■□□□□ 0.46
PDLIM2-220ENST00000622226 DDX11Q96FC9 970 aa17.95■□□□□ 0.46
PDLIM2-220ENST00000622226 CCDC91Q7Z6B0 441 aa17.95■□□□□ 0.46
PDLIM2-220ENST00000622226 C16orf45Q96MC5 204 aaPredicted RBP17.95■□□□□ 0.46
PDLIM2-220ENST00000622226 MNAT1P51948 309 aa17.94■□□□□ 0.46
PDLIM2-220ENST00000622226 LMAN1P49257 510 aa17.94■□□□□ 0.46
PDLIM2-220ENST00000622226 NUP133Q8WUM0 1156 aa17.94■□□□□ 0.46
PDLIM2-220ENST00000622226 GRM1Q13255 1194 aa17.94■□□□□ 0.46
PDLIM2-220ENST00000622226 TBC1D2BQ9UPU7 963 aa17.94■□□□□ 0.46
PDLIM2-220ENST00000622226 IFFO1Q0D2I5 559 aa17.93■□□□□ 0.46
PDLIM2-220ENST00000622226 JAKMIP3Q5VZ66 844 aa17.93■□□□□ 0.46
PDLIM2-220ENST00000622226 ADAMTS8Q9UP79 889 aa17.93■□□□□ 0.46
PDLIM2-220ENST00000622226 ATP2C2O75185 946 aa17.93■□□□□ 0.46
PDLIM2-220ENST00000622226 GTF2A1P52655 376 aaPredicted RBP17.93■□□□□ 0.46
PDLIM2-220ENST00000622226 KIF4BQ2VIQ3 1234 aa17.93■□□□□ 0.46
PDLIM2-220ENST00000622226 TXLNBQ8N3L3 684 aa17.93■□□□□ 0.46
PDLIM2-220ENST00000622226 GBP3Q9H0R5 595 aa17.93■□□□□ 0.46
PDLIM2-220ENST00000622226 ADAMTS2O95450 1211 aa17.93■□□□□ 0.46
PDLIM2-220ENST00000622226 KIF18AQ8NI77 898 aa17.93■□□□□ 0.46
PDLIM2-220ENST00000622226 WWC2Q6AWC2 1192 aa17.93■□□□□ 0.46
PDLIM2-220ENST00000622226 PTPRGP23470 1445 aa17.92■□□□□ 0.46
PDLIM2-220ENST00000622226 FAM107BQ9H098 131 aa17.92■□□□□ 0.46
PDLIM2-220ENST00000622226 PIBF1Q8WXW3 757 aa17.92■□□□□ 0.46
PDLIM2-220ENST00000622226 BCAR3O75815 825 aa17.92■□□□□ 0.46
PDLIM2-220ENST00000622226 WWC3Q9ULE0 1092 aa17.91■□□□□ 0.46
PDLIM2-220ENST00000622226 AKNAQ7Z591 1439 aa17.91■□□□□ 0.46
PDLIM2-220ENST00000622226 MAP3K11Q16584 847 aa17.91■□□□□ 0.46
PDLIM2-220ENST00000622226 UBE2Q2Q8WVN8 375 aa17.91■□□□□ 0.46
PDLIM2-220ENST00000622226 CCDC144AA2RUR9 1427 aa17.91■□□□□ 0.46
PDLIM2-220ENST00000622226 SFPQP23246 707 aaKnown RBP eCLIP17.9■□□□□ 0.46
PDLIM2-220ENST00000622226 SIL1Q9H173 461 aa17.9■□□□□ 0.46
PDLIM2-220ENST00000622226 RAPGEF4Q8WZA2 1011 aa17.9■□□□□ 0.46
PDLIM2-220ENST00000622226 MYCNP04198 464 aaPredicted RBP17.9■□□□□ 0.46
PDLIM2-220ENST00000622226 CCDC178Q5BJE1 867 aa17.9■□□□□ 0.46
PDLIM2-220ENST00000622226 PUS7Q96PZ0 661 aaKnown RBP17.9■□□□□ 0.46
PDLIM2-220ENST00000622226 BICDL1Q6ZP65 573 aa17.9■□□□□ 0.46
PDLIM2-220ENST00000622226 NOB1Q9ULX3 412 aaKnown RBP17.9■□□□□ 0.46
PDLIM2-220ENST00000622226 FERMT3Q86UX7 667 aa17.89■□□□□ 0.46
PDLIM2-220ENST00000622226 ZBTB9Q96C00 473 aa17.89■□□□□ 0.46
PDLIM2-220ENST00000622226 ZNF219Q9P2Y4 722 aaPredicted RBP17.89■□□□□ 0.46
PDLIM2-220ENST00000622226 BAZ1AQ9NRL2 1556 aaPredicted RBP17.89■□□□□ 0.46
PDLIM2-220ENST00000622226 MAP9Q49MG5 647 aa17.89■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms