RNA–Protein interactions for RNA: ENST00000616179.4

SYNRG-223, Transcript of synergin gamma, human

APPRIS ALT2 TSL 5 BASIC

Gene SYNRG, Length 4,050 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNRG-223	ENST00000616179	NECTIN2	Q92692	538 aa		18.8	■□□□□ 0.6
SYNRG-223	ENST00000616179	CUL7	Q14999	1698 aa		18.8	■□□□□ 0.6
SYNRG-223	ENST00000616179	KIF21A	Q7Z4S6	1674 aa		18.8	■□□□□ 0.6
SYNRG-223	ENST00000616179	ARHGEF12	Q9NZN5	1544 aa		18.8	■□□□□ 0.6
SYNRG-223	ENST00000616179	CCDC183	Q5T5S1	534 aa		18.8	■□□□□ 0.6
SYNRG-223	ENST00000616179	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	18.8	■□□□□ 0.6
SYNRG-223	ENST00000616179	ARHGEF11	O15085	1522 aa		18.8	■□□□□ 0.6
SYNRG-223	ENST00000616179	CNPY2	Q9Y2B0	182 aa		18.79	■□□□□ 0.6
SYNRG-223	ENST00000616179	ATAD2	Q6PL18	1390 aa		18.79	■□□□□ 0.6
SYNRG-223	ENST00000616179	PLB1	Q6P1J6	1458 aa		18.79	■□□□□ 0.6
SYNRG-223	ENST00000616179	CARMIL2	Q6F5E8	1435 aa		18.79	■□□□□ 0.6
SYNRG-223	ENST00000616179	TTC22	Q5TAA0	569 aa		18.79	■□□□□ 0.6
SYNRG-223	ENST00000616179	TAF3	Q5VWG9	929 aa		18.79	■□□□□ 0.6
SYNRG-223	ENST00000616179	KIF2C	Q99661	725 aa		18.79	■□□□□ 0.6
SYNRG-223	ENST00000616179	FBLN1	P23142	703 aa		18.79	■□□□□ 0.6
SYNRG-223	ENST00000616179	NLRP1	Q9C000	1473 aa		18.79	■□□□□ 0.6
SYNRG-223	ENST00000616179	DDX54	Q8TDD1	881 aa	Known RBP	18.79	■□□□□ 0.6
SYNRG-223	ENST00000616179	PDLIM2	Q96JY6	352 aa		18.78	■□□□□ 0.6
SYNRG-223	ENST00000616179	CTTNBP2	Q8WZ74	1663 aa		18.78	■□□□□ 0.6
SYNRG-223	ENST00000616179	FERMT3	Q86UX7	667 aa		18.78	■□□□□ 0.6
SYNRG-223	ENST00000616179	CKAP2L	Q8IYA6	745 aa		18.78	■□□□□ 0.6
SYNRG-223	ENST00000616179	DNMT1	P26358	1616 aa	Known RBP	18.78	■□□□□ 0.6
SYNRG-223	ENST00000616179	CC2D2A	Q9P2K1	1620 aa		18.78	■□□□□ 0.6
SYNRG-223	ENST00000616179	BECN2	A8MW95	431 aa		18.78	■□□□□ 0.6
SYNRG-223	ENST00000616179	BICD2	Q8TD16	824 aa		18.78	■□□□□ 0.6
SYNRG-223	ENST00000616179	MINK1	Q8N4C8	1332 aa	Predicted RBP	18.78	■□□□□ 0.6
SYNRG-223	ENST00000616179	DNMBP	Q6XZF7	1577 aa		18.77	■□□□□ 0.6
SYNRG-223	ENST00000616179	PLEKHM2	Q8IWE5	1019 aa		18.77	■□□□□ 0.6
SYNRG-223	ENST00000616179	EXOC6B	Q9Y2D4	811 aa		18.77	■□□□□ 0.6
SYNRG-223	ENST00000616179	CCDC192	P0DO97	292 aa		18.77	■□□□□ 0.6
SYNRG-223	ENST00000616179	TRMT1	Q9NXH9	659 aa	Known RBP	18.77	■□□□□ 0.6
SYNRG-223	ENST00000616179	A2M	P01023	1474 aa		18.77	■□□□□ 0.59
SYNRG-223	ENST00000616179	SPAG9	O60271	1321 aa	Known RBP	18.77	■□□□□ 0.59
SYNRG-223	ENST00000616179	KANK1	Q14678	1352 aa		18.77	■□□□□ 0.59
SYNRG-223	ENST00000616179	PTGS1	P23219	599 aa		18.76	■□□□□ 0.59
SYNRG-223	ENST00000616179	FILIP1	Q7Z7B0	1213 aa		18.76	■□□□□ 0.59
SYNRG-223	ENST00000616179	CCDC186	Q7Z3E2	898 aa		18.76	■□□□□ 0.59
SYNRG-223	ENST00000616179	MCM2	P49736	904 aa		18.75	■□□□□ 0.59
SYNRG-223	ENST00000616179	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	18.75	■□□□□ 0.59
SYNRG-223	ENST00000616179	ADGRF5	Q8IZF2	1346 aa		18.75	■□□□□ 0.59
SYNRG-223	ENST00000616179	GSPT1	P15170	499 aa	Known RBP	18.75	■□□□□ 0.59
SYNRG-223	ENST00000616179	GNAI1	P63096	354 aa		18.75	■□□□□ 0.59
SYNRG-223	ENST00000616179	DCTN1	Q14203	1278 aa		18.75	■□□□□ 0.59
SYNRG-223	ENST00000616179	CCAR2	Q8N163	923 aa	Known RBP	18.75	■□□□□ 0.59
SYNRG-223	ENST00000616179	TSPYL6	Q8N831	410 aa		18.75	■□□□□ 0.59
SYNRG-223	ENST00000616179	ZBTB9	Q96C00	473 aa		18.75	■□□□□ 0.59
SYNRG-223	ENST00000616179	TPM3	P06753	285 aa		18.75	■□□□□ 0.59
SYNRG-223	ENST00000616179	EVC2	Q86UK5	1308 aa		18.75	■□□□□ 0.59
SYNRG-223	ENST00000616179	HTATSF1	O43719	755 aa	Known RBP	18.74	■□□□□ 0.59
SYNRG-223	ENST00000616179	FOSB	P53539	338 aa		18.74	■□□□□ 0.59
SYNRG-223	ENST00000616179	GNL2	Q13823	731 aa	Known RBP	18.74	■□□□□ 0.59
SYNRG-223	ENST00000616179	ZFP91	Q96JP5	570 aa	Predicted RBP	18.74	■□□□□ 0.59
SYNRG-223	ENST00000616179	TERF2IP	Q9NYB0	399 aa		18.74	■□□□□ 0.59
SYNRG-223	ENST00000616179	DDIT3	P35638	169 aa		18.74	■□□□□ 0.59
SYNRG-223	ENST00000616179	AFAP1	Q8N556	730 aa		18.74	■□□□□ 0.59
SYNRG-223	ENST00000616179	GTF2F1	P35269	517 aa	Known RBP eCLIP	18.74	■□□□□ 0.59
SYNRG-223	ENST00000616179	EFCAB2	Q5VUJ9	269 aa		18.74	■□□□□ 0.59
SYNRG-223	ENST00000616179	HOMER1	Q86YM7	354 aa		18.74	■□□□□ 0.59
SYNRG-223	ENST00000616179	ZBTB7B	O15156	539 aa	Predicted RBP	18.73	■□□□□ 0.59
SYNRG-223	ENST00000616179	TIGD1	Q96MW7	591 aa		18.73	■□□□□ 0.59
SYNRG-223	ENST00000616179	POLR3A	O14802	1390 aa	Predicted RBP	18.73	■□□□□ 0.59
SYNRG-223	ENST00000616179	POLR3G	O15318	223 aa	Predicted RBP	18.73	■□□□□ 0.59
SYNRG-223	ENST00000616179	NRDC	O43847	1150 aa		18.73	■□□□□ 0.59
SYNRG-223	ENST00000616179	PYCARD	Q9ULZ3	195 aa		18.73	■□□□□ 0.59
SYNRG-223	ENST00000616179	IQGAP2	Q13576	1575 aa		18.73	■□□□□ 0.59
SYNRG-223	ENST00000616179	SCAPER	Q9BY12	1400 aa		18.72	■□□□□ 0.59
SYNRG-223	ENST00000616179	KDM4A	O75164	1064 aa		18.72	■□□□□ 0.59
SYNRG-223	ENST00000616179	OGFR	Q9NZT2	677 aa		18.72	■□□□□ 0.59
SYNRG-223	ENST00000616179	CEBPZ	Q03701	1054 aa	Known RBP	18.71	■□□□□ 0.59
SYNRG-223	ENST00000616179	IBTK	Q9P2D0	1353 aa	Predicted RBP	18.71	■□□□□ 0.59
SYNRG-223	ENST00000616179	NUP153	P49790	1475 aa	Known RBP	18.71	■□□□□ 0.59
SYNRG-223	ENST00000616179	UVSSA	Q2YD98	709 aa		18.71	■□□□□ 0.59
SYNRG-223	ENST00000616179	ZNF710	Q8N1W2	664 aa		18.71	■□□□□ 0.59
SYNRG-223	ENST00000616179	STAC3	Q96MF2	364 aa		18.71	■□□□□ 0.59
SYNRG-223	ENST00000616179	SCAF11	Q99590	1463 aa	Known RBP	18.7	■□□□□ 0.58
SYNRG-223	ENST00000616179	CERS3	Q8IU89	383 aa		18.7	■□□□□ 0.58
SYNRG-223	ENST00000616179	PDIA4	P13667	645 aa	Known RBP	18.7	■□□□□ 0.58
SYNRG-223	ENST00000616179	NAA30	Q147X3	362 aa	Predicted RBP	18.7	■□□□□ 0.58
SYNRG-223	ENST00000616179	ALDH1L2	Q3SY69	923 aa		18.7	■□□□□ 0.58
SYNRG-223	ENST00000616179	TNMD	Q9H2S6	317 aa		18.7	■□□□□ 0.58
SYNRG-223	ENST00000616179	MX1	P20591	662 aa		18.69	■□□□□ 0.58
SYNRG-223	ENST00000616179	IL1RAPL2	Q9NP60	686 aa		18.69	■□□□□ 0.58
SYNRG-223	ENST00000616179	ZNF608	Q9ULD9	1512 aa	Predicted RBP	18.69	■□□□□ 0.58
SYNRG-223	ENST00000616179	WDR7	Q9Y4E6	1490 aa		18.69	■□□□□ 0.58
SYNRG-223	ENST00000616179	TRIM34	Q9BYJ4	488 aa		18.69	■□□□□ 0.58
SYNRG-223	ENST00000616179	TEX35	Q5T0J7	233 aa		18.69	■□□□□ 0.58
SYNRG-223	ENST00000616179	KRT222	Q8N1A0	295 aa		18.69	■□□□□ 0.58
SYNRG-223	ENST00000616179	ZMYM3	Q14202	1370 aa		18.68	■□□□□ 0.58
SYNRG-223	ENST00000616179	GTF2E1	P29083	439 aa	Predicted RBP	18.68	■□□□□ 0.58
SYNRG-223	ENST00000616179	CCDC83	Q8IWF9	413 aa		18.68	■□□□□ 0.58
SYNRG-223	ENST00000616179	POLR1A	O95602	1720 aa	Predicted RBP	18.68	■□□□□ 0.58
SYNRG-223	ENST00000616179	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	18.68	■□□□□ 0.58
SYNRG-223	ENST00000616179	SKIDA1	Q1XH10	827 aa		18.68	■□□□□ 0.58
SYNRG-223	ENST00000616179	TRIM35	Q9UPQ4	493 aa		18.68	■□□□□ 0.58
SYNRG-223	ENST00000616179	ZDHHC9	Q9Y397	364 aa		18.68	■□□□□ 0.58
SYNRG-223	ENST00000616179	FAM135A	Q9P2D6	1515 aa		18.68	■□□□□ 0.58
SYNRG-223	ENST00000616179	LRMP	Q12912	555 aa		18.67	■□□□□ 0.58
SYNRG-223	ENST00000616179	FEZ1	Q99689	392 aa		18.67	■□□□□ 0.58
SYNRG-223	ENST00000616179	NUP62CL	Q9H1M0	184 aa		18.67	■□□□□ 0.58
SYNRG-223	ENST00000616179	LUZP1	Q86V48	1076 aa		18.67	■□□□□ 0.58

Retrieved 100 of 20,778 RNA–protein pairs in 405.8 ms