RNA–Protein interactions for RNA: ENST00000615335.4

FOXN3-219, Transcript of forkhead box N3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene FOXN3, Length 2,421 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3-219ENST00000615335 ROBO1Q9Y6N7 1651 aa16.91■□□□□ 0.3
FOXN3-219ENST00000615335 UBAP1LF5GYI3 381 aa16.91■□□□□ 0.3
FOXN3-219ENST00000615335 RCAN3Q9UKA8 241 aa16.91■□□□□ 0.3
FOXN3-219ENST00000615335 RRS1Q15050 365 aaKnown RBP16.9■□□□□ 0.3
FOXN3-219ENST00000615335 POLKQ9UBT6 870 aa16.9■□□□□ 0.3
FOXN3-219ENST00000615335 SBNO1A3KN83 1393 aa16.9■□□□□ 0.3
FOXN3-219ENST00000615335 SOS2Q07890 1332 aaPredicted RBP16.89■□□□□ 0.29
FOXN3-219ENST00000615335 AATKQ6ZMQ8 1374 aa16.89■□□□□ 0.29
FOXN3-219ENST00000615335 CFAP53Q96M91 514 aa16.89■□□□□ 0.29
FOXN3-219ENST00000615335 SPATA31A3Q5VYP0 1347 aa16.88■□□□□ 0.29
FOXN3-219ENST00000615335 EMILIN1Q9Y6C2 1016 aa16.88■□□□□ 0.29
FOXN3-219ENST00000615335 TNS3Q68CZ2 1445 aa16.88■□□□□ 0.29
FOXN3-219ENST00000615335 MARF1Q9Y4F3 1742 aaKnown RBP16.88■□□□□ 0.29
FOXN3-219ENST00000615335 RRP9O43818 475 aaKnown RBP16.88■□□□□ 0.29
FOXN3-219ENST00000615335 ALS2Q96Q42 1657 aa16.88■□□□□ 0.29
FOXN3-219ENST00000615335 NHSL1Q5SYE7 1610 aa16.88■□□□□ 0.29
FOXN3-219ENST00000615335 IQSEC2Q5JU85 1478 aa16.87■□□□□ 0.29
FOXN3-219ENST00000615335 USP54Q70EL1 1684 aa16.87■□□□□ 0.29
FOXN3-219ENST00000615335 INSRP06213 1382 aa16.87■□□□□ 0.29
FOXN3-219ENST00000615335 KCNH5Q8NCM2 988 aa16.86■□□□□ 0.29
FOXN3-219ENST00000615335 EXOC6Q8TAG9 804 aa16.86■□□□□ 0.29
FOXN3-219ENST00000615335 WDR43Q15061 677 aaKnown RBP eCLIP16.85■□□□□ 0.29
FOXN3-219ENST00000615335 DDRGK1Q96HY6 314 aa16.85■□□□□ 0.29
FOXN3-219ENST00000615335 ARHGEF10O15013 1369 aa16.85■□□□□ 0.29
FOXN3-219ENST00000615335 GCP02774 474 aa16.85■□□□□ 0.29
FOXN3-219ENST00000615335 BLMP54132 1417 aaPredicted RBP16.84■□□□□ 0.29
FOXN3-219ENST00000615335 MAP3K19Q56UN5 1328 aa16.83■□□□□ 0.29
FOXN3-219ENST00000615335 CABLES1Q8TDN4 633 aa16.83■□□□□ 0.28
FOXN3-219ENST00000615335 FRAT1Q92837 279 aaPredicted RBP16.83■□□□□ 0.28
FOXN3-219ENST00000615335 USP19O94966 1318 aa16.83■□□□□ 0.28
FOXN3-219ENST00000615335 AMPHP49418 695 aa16.82■□□□□ 0.28
FOXN3-219ENST00000615335 ZBTB7CA1YPR0 619 aa16.82■□□□□ 0.28
FOXN3-219ENST00000615335 HSP90AA2PQ14568 343 aaPredicted RBP16.82■□□□□ 0.28
FOXN3-219ENST00000615335 LRRC59Q96AG4 307 aaKnown RBP16.82■□□□□ 0.28
FOXN3-219ENST00000615335 CDCA7LQ96GN5 454 aa16.82■□□□□ 0.28
FOXN3-219ENST00000615335 PNPLA6Q8IY17 1366 aa16.82■□□□□ 0.28
FOXN3-219ENST00000615335 AHDC1Q5TGY3 1603 aaPredicted RBP16.81■□□□□ 0.28
FOXN3-219ENST00000615335 TCERG1O14776 1098 aaKnown RBP16.81■□□□□ 0.28
FOXN3-219ENST00000615335 DIAPH1O60610 1272 aaKnown RBP16.81■□□□□ 0.28
FOXN3-219ENST00000615335 ADAMTS8Q9UP79 889 aa16.81■□□□□ 0.28
FOXN3-219ENST00000615335 SLIT3O75094 1523 aa16.81■□□□□ 0.28
FOXN3-219ENST00000615335 MED1Q15648 1581 aaPredicted RBP16.8■□□□□ 0.28
FOXN3-219ENST00000615335 CDK12Q9NYV4 1490 aaPredicted RBP16.8■□□□□ 0.28
FOXN3-219ENST00000615335 HSP90AB2PQ58FF8 381 aa16.79■□□□□ 0.28
FOXN3-219ENST00000615335 PHLPP1O60346 1717 aa16.79■□□□□ 0.28
FOXN3-219ENST00000615335 NFAT5O94916 1531 aa16.79■□□□□ 0.28
FOXN3-219ENST00000615335 LTN1O94822 1766 aa16.79■□□□□ 0.28
FOXN3-219ENST00000615335 U2SURPO15042 1029 aaKnown RBP16.79■□□□□ 0.28
FOXN3-219ENST00000615335 HAP1P54257 671 aaPredicted RBP16.79■□□□□ 0.28
FOXN3-219ENST00000615335 ZC3H6P61129 1189 aaKnown RBP16.79■□□□□ 0.28
FOXN3-219ENST00000615335 PEAK1Q9H792 1746 aa16.78■□□□□ 0.28
FOXN3-219ENST00000615335 COL3A1P02461 1466 aaPredicted RBP16.78■□□□□ 0.28
FOXN3-219ENST00000615335 NFKBIBQ15653 356 aa16.78■□□□□ 0.28
FOXN3-219ENST00000615335 NPM2Q86SE8 214 aaKnown RBP16.78■□□□□ 0.28
FOXN3-219ENST00000615335 FLT4P35916 1363 aa16.78■□□□□ 0.28
FOXN3-219ENST00000615335 SHPRHQ149N8 1683 aa16.78■□□□□ 0.28
FOXN3-219ENST00000615335 U2AF1L5P0DN76 240 aaPredicted RBP16.77■□□□□ 0.28
FOXN3-219ENST00000615335 MS4A1P11836 297 aa16.77■□□□□ 0.28
FOXN3-219ENST00000615335 U2AF1Q01081 240 aaKnown RBP eCLIP16.77■□□□□ 0.282e-7■□□□□ 8.2
FOXN3-219ENST00000615335 PHRF1Q9P1Y6 1649 aaKnown RBP16.77■□□□□ 0.28
FOXN3-219ENST00000615335 HOXC9P31274 260 aa16.77■□□□□ 0.27
FOXN3-219ENST00000615335 ARHGEF25Q86VW2 580 aa16.77■□□□□ 0.27
FOXN3-219ENST00000615335 KIF24Q5T7B8 1368 aa16.76■□□□□ 0.27
FOXN3-219ENST00000615335 HSP90AA1P07900 732 aaKnown RBP16.75■□□□□ 0.27
FOXN3-219ENST00000615335 IL13P35225 146 aa16.75■□□□□ 0.27
FOXN3-219ENST00000615335 EIF4A2Q14240 407 aaKnown RBP16.75■□□□□ 0.27
FOXN3-219ENST00000615335 IP6K1Q92551 441 aa16.75■□□□□ 0.27
FOXN3-219ENST00000615335 CRYBG1Q9Y4K1 1723 aa16.75■□□□□ 0.27
FOXN3-219ENST00000615335 COL16A1Q07092 1604 aaPredicted RBP16.74■□□□□ 0.27
FOXN3-219ENST00000615335 RTL1A6NKG5 1358 aa16.74■□□□□ 0.27
FOXN3-219ENST00000615335 CCDC146Q8IYE0 955 aa16.73■□□□□ 0.27
FOXN3-219ENST00000615335 LTV1Q96GA3 475 aaPredicted RBP16.73■□□□□ 0.27
FOXN3-219ENST00000615335 PLIN1O60240 522 aa16.72■□□□□ 0.27
FOXN3-219ENST00000615335 PDE4AP27815 886 aa16.72■□□□□ 0.27
FOXN3-219ENST00000615335 BACH2Q9BYV9 841 aa16.72■□□□□ 0.27
FOXN3-219ENST00000615335 KIAA0232Q92628 1395 aa16.72■□□□□ 0.27
FOXN3-219ENST00000615335 CHRNA2Q15822 529 aa16.71■□□□□ 0.27
FOXN3-219ENST00000615335 HMOX1P09601 288 aa16.7■□□□□ 0.26
FOXN3-219ENST00000615335 AXIN2Q9Y2T1 843 aa16.7■□□□□ 0.26
FOXN3-219ENST00000615335 ABCA3Q99758 1704 aa16.7■□□□□ 0.26
FOXN3-219ENST00000615335 CRBNQ96SW2 442 aa16.7■□□□□ 0.26
FOXN3-219ENST00000615335 PRDM11Q9NQV5 511 aa16.7■□□□□ 0.26
FOXN3-219ENST00000615335 CPDO75976 1380 aa16.69■□□□□ 0.26
FOXN3-219ENST00000615335 COL22A1Q8NFW1 1626 aaPredicted RBP16.68■□□□□ 0.26
FOXN3-219ENST00000615335 RGPD5Q99666 1765 aa16.68■□□□□ 0.26
FOXN3-219ENST00000615335 FCHSD2O94868 740 aa16.68■□□□□ 0.26
FOXN3-219ENST00000615335 RUNDC1Q96C34 613 aa16.67■□□□□ 0.26
FOXN3-219ENST00000615335 PNNQ9H307 717 aaKnown RBP16.67■□□□□ 0.26
FOXN3-219ENST00000615335 SULT6B1Q6IMI4 303 aa16.67■□□□□ 0.26
FOXN3-219ENST00000615335 ANKRD24Q8TF21 1146 aa16.67■□□□□ 0.26
FOXN3-219ENST00000615335 EYA1Q99502 592 aa16.67■□□□□ 0.26
FOXN3-219ENST00000615335 NUTM2BA6NNL0 878 aaPredicted RBP16.66■□□□□ 0.26
FOXN3-219ENST00000615335 NUTM2EB1AL46 878 aaPredicted RBP16.66■□□□□ 0.26
FOXN3-219ENST00000615335 APAF1O14727 1248 aa16.66■□□□□ 0.26
FOXN3-219ENST00000615335 PRKAR2BP31323 418 aa16.66■□□□□ 0.26
FOXN3-219ENST00000615335 HSPA1LP34931 641 aa16.66■□□□□ 0.26
FOXN3-219ENST00000615335 NUTM2AQ8IVF1 878 aaPredicted RBP16.66■□□□□ 0.26
FOXN3-219ENST00000615335 AEBP1Q8IUX7 1158 aa16.65■□□□□ 0.26
FOXN3-219ENST00000615335 COL18A1P39060 1754 aa16.65■□□□□ 0.26
FOXN3-219ENST00000615335 NAP1L5Q96NT1 182 aaPredicted RBP16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms