RNA–Protein interactions for RNA: ENST00000612946.4

TTC28-208, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TTC28, Length 11,274 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-208ENST00000612946 CNTROBQ8N137 903 aa10.31□□□□□ -0.76
TTC28-208ENST00000612946 SERPINC1P01008 464 aa10.31□□□□□ -0.76
TTC28-208ENST00000612946 RNF168Q8IYW5 571 aaPredicted RBP10.31□□□□□ -0.76
TTC28-208ENST00000612946 CEP112Q8N8E3 955 aa10.31□□□□□ -0.76
TTC28-208ENST00000612946 NAA15Q9BXJ9 866 aaKnown RBP10.31□□□□□ -0.76
TTC28-208ENST00000612946 ARFGAP3Q9NP61 516 aa10.31□□□□□ -0.76
TTC28-208ENST00000612946 CASQ1P31415 396 aa10.3□□□□□ -0.76
TTC28-208ENST00000612946 SCAND2PQ9GZW5 306 aaPredicted RBP10.3□□□□□ -0.76
TTC28-208ENST00000612946 MARCH6O60337 910 aa10.3□□□□□ -0.76
TTC28-208ENST00000612946 ZNF428Q96B54 188 aa10.3□□□□□ -0.76
TTC28-208ENST00000612946 PPP6R1Q9UPN7 881 aa10.3□□□□□ -0.76
TTC28-208ENST00000612946 ERC1Q8IUD2 1116 aa10.3□□□□□ -0.76
TTC28-208ENST00000612946 L3MBTL2Q969R5 705 aa10.3□□□□□ -0.76
TTC28-208ENST00000612946 MRVI1Q9Y6F6 885 aa10.3□□□□□ -0.76
TTC28-208ENST00000612946 RUNDC1Q96C34 613 aa10.3□□□□□ -0.76
TTC28-208ENST00000612946 SUDS3Q9H7L9 328 aaPredicted RBP10.3□□□□□ -0.76
TTC28-208ENST00000612946 PRDM10Q9NQV6 1147 aa10.3□□□□□ -0.76
TTC28-208ENST00000612946 MKRN1Q9UHC7 482 aaKnown RBP10.3□□□□□ -0.76
TTC28-208ENST00000612946 EPB41L2O43491 1005 aaKnown RBP10.3□□□□□ -0.76
TTC28-208ENST00000612946 B4GALNT4Q76KP1 1039 aa10.3□□□□□ -0.76
TTC28-208ENST00000612946 KLHL40Q2TBA0 621 aa10.3□□□□□ -0.76
TTC28-208ENST00000612946 ZNF397Q8NF99 534 aaPredicted RBP10.3□□□□□ -0.76
TTC28-208ENST00000612946 CTCFLQ8NI51 663 aaPredicted RBP10.29□□□□□ -0.76
TTC28-208ENST00000612946 ZNF622Q969S3 477 aaKnown RBP eCLIP10.29□□□□□ -0.76
TTC28-208ENST00000612946 SOGA1O94964 1423 aa10.29□□□□□ -0.76
TTC28-208ENST00000612946 MAP2K1Q02750 393 aaPredicted RBP10.29□□□□□ -0.76
TTC28-208ENST00000612946 SPC24Q8NBT2 197 aa10.29□□□□□ -0.76
TTC28-208ENST00000612946 CCDC9Q9Y3X0 531 aaKnown RBP10.29□□□□□ -0.76
TTC28-208ENST00000612946 ERCC6Q03468 1493 aa10.29□□□□□ -0.76
TTC28-208ENST00000612946 STMN4Q9H169 189 aaPredicted RBP10.29□□□□□ -0.76
TTC28-208ENST00000612946 IPO4Q8TEX9 1081 aaKnown RBP10.28□□□□□ -0.76
TTC28-208ENST00000612946 UPF3BQ9BZI7 483 aaKnown RBP10.28□□□□□ -0.76
TTC28-208ENST00000612946 EBAG9O00559 213 aa10.28□□□□□ -0.76
TTC28-208ENST00000612946 STAMBPO95630 424 aa10.28□□□□□ -0.76
TTC28-208ENST00000612946 MSL1Q68DK7 614 aa10.28□□□□□ -0.76
TTC28-208ENST00000612946 IFIT2P09913 472 aaKnown RBP10.28□□□□□ -0.76
TTC28-208ENST00000612946 SENP3-EIF4A1A0A087X0R7 540 aa10.28□□□□□ -0.76
TTC28-208ENST00000612946 AMOTL1Q8IY63 956 aa10.28□□□□□ -0.76
TTC28-208ENST00000612946 PRM3Q9NNZ6 103 aa10.28□□□□□ -0.76
TTC28-208ENST00000612946 USH1CQ9Y6N9 552 aa10.28□□□□□ -0.76
TTC28-208ENST00000612946 CKAP4Q07065 602 aaKnown RBP10.27□□□□□ -0.76
TTC28-208ENST00000612946 UTP14CQ5TAP6 766 aaKnown RBP10.27□□□□□ -0.76
TTC28-208ENST00000612946 EIF4G1Q04637 1599 aaKnown RBP10.27□□□□□ -0.76
TTC28-208ENST00000612946 CDKL5O76039 1030 aa10.27□□□□□ -0.76
TTC28-208ENST00000612946 DDX46Q7L014 1031 aaKnown RBP10.27□□□□□ -0.76
TTC28-208ENST00000612946 DAAM2Q86T65 1068 aa10.27□□□□□ -0.77
TTC28-208ENST00000612946 LMAN1P49257 510 aa10.27□□□□□ -0.77
TTC28-208ENST00000612946 ZKSCAN5Q9Y2L8 839 aa10.27□□□□□ -0.77
TTC28-208ENST00000612946 HMGB1P1B2RPK0 211 aaPredicted RBP10.27□□□□□ -0.77
TTC28-208ENST00000612946 FIBPO43427 364 aa10.27□□□□□ -0.77
TTC28-208ENST00000612946 ERICH2A1L162 156 aa10.27□□□□□ -0.77
TTC28-208ENST00000612946 AKNAQ7Z591 1439 aa10.26□□□□□ -0.77
TTC28-208ENST00000612946 TNNT1P13805 278 aa10.26□□□□□ -0.77
TTC28-208ENST00000612946 SH2B1Q9NRF2 756 aaPredicted RBP10.26□□□□□ -0.77
TTC28-208ENST00000612946 GNAI1P63096 354 aa10.26□□□□□ -0.77
TTC28-208ENST00000612946 RALYLQ86SE5 291 aaKnown RBP10.26□□□□□ -0.77
TTC28-208ENST00000612946 ANO10Q9NW15 660 aa10.26□□□□□ -0.77
TTC28-208ENST00000612946 CUX2O14529 1486 aa10.26□□□□□ -0.77
TTC28-208ENST00000612946 OPA1O60313 960 aa10.26□□□□□ -0.77
TTC28-208ENST00000612946 TTC14Q96N46 770 aa10.26□□□□□ -0.77
TTC28-208ENST00000612946 ANKRD18BA2A2Z9 1011 aa10.26□□□□□ -0.77
TTC28-208ENST00000612946 TAOK3Q9H2K8 898 aa10.26□□□□□ -0.77
TTC28-208ENST00000612946 PLIN1O60240 522 aa10.26□□□□□ -0.77
TTC28-208ENST00000612946 SART3Q15020 963 aaKnown RBP10.26□□□□□ -0.77
TTC28-208ENST00000612946 STK38Q15208 465 aa10.26□□□□□ -0.77
TTC28-208ENST00000612946 TUBB2AQ13885 445 aa10.26□□□□□ -0.77
TTC28-208ENST00000612946 TAF4BQ92750 862 aa10.26□□□□□ -0.77
TTC28-208ENST00000612946 TUBB2BQ9BVA1 445 aa10.26□□□□□ -0.77
TTC28-208ENST00000612946 SYCE3A1L190 88 aa10.26□□□□□ -0.77
TTC28-208ENST00000612946 CEP135Q66GS9 1140 aa10.26□□□□□ -0.77
TTC28-208ENST00000612946 RAPGEF2Q9Y4G8 1499 aa10.25□□□□□ -0.77
TTC28-208ENST00000612946 SPATS2Q86XZ4 545 aaKnown RBP10.25□□□□□ -0.77
TTC28-208ENST00000612946 FAM184BQ9ULE4 1060 aa10.25□□□□□ -0.77
TTC28-208ENST00000612946 MSH5O43196 834 aa10.25□□□□□ -0.77
TTC28-208ENST00000612946 TICAM2Q86XR7 235 aa10.25□□□□□ -0.77
TTC28-208ENST00000612946 KRT32Q14532 448 aa10.25□□□□□ -0.77
TTC28-208ENST00000612946 STX1AQ16623 288 aa10.25□□□□□ -0.77
TTC28-208ENST00000612946 KIF5BP33176 963 aa10.25□□□□□ -0.77
TTC28-208ENST00000612946 CEP63Q96MT8 703 aa10.25□□□□□ -0.77
TTC28-208ENST00000612946 LMOD2Q6P5Q4 547 aa10.25□□□□□ -0.77
TTC28-208ENST00000612946 SEPT14Q6ZU15 432 aa10.25□□□□□ -0.77
TTC28-208ENST00000612946 ALS2CR12Q96Q35 445 aa10.25□□□□□ -0.77
TTC28-208ENST00000612946 ZFYP08048 801 aaPredicted RBP10.25□□□□□ -0.77
TTC28-208ENST00000612946 ARHGAP25P42331 645 aa10.25□□□□□ -0.77
TTC28-208ENST00000612946 XPCQ01831 940 aaPredicted RBP10.25□□□□□ -0.77
TTC28-208ENST00000612946 CARMIL2Q6F5E8 1435 aa10.25□□□□□ -0.77
TTC28-208ENST00000612946 NEK4P51957 841 aa10.25□□□□□ -0.77
TTC28-208ENST00000612946 CCDC88BA6NC98 1476 aa10.24□□□□□ -0.77
TTC28-208ENST00000612946 DDX19AQ9NUU7 478 aaKnown RBP10.24□□□□□ -0.77
TTC28-208ENST00000612946 CEP83Q9Y592 693 aa10.24□□□□□ -0.77
TTC28-208ENST00000612946 SNW1Q13573 536 aaKnown RBP10.24□□□□□ -0.77
TTC28-208ENST00000612946 FOXD4L6Q3SYB3 417 aaPredicted RBP10.24□□□□□ -0.77
TTC28-208ENST00000612946 FOXD4L3Q6VB84 417 aaPredicted RBP10.24□□□□□ -0.77
TTC28-208ENST00000612946 SPATA32Q96LK8 384 aa10.24□□□□□ -0.77
TTC28-208ENST00000612946 TRIM34Q9BYJ4 488 aa10.24□□□□□ -0.77
TTC28-208ENST00000612946 FYCO1Q9BQS8 1478 aa10.24□□□□□ -0.77
TTC28-208ENST00000612946 RNF187Q5TA31 235 aaPredicted RBP10.24□□□□□ -0.77
TTC28-208ENST00000612946 AIMP1Q12904 312 aaKnown RBP10.24□□□□□ -0.77
TTC28-208ENST00000612946 ZBTB17Q13105 803 aa10.24□□□□□ -0.77
TTC28-208ENST00000612946 KCNH8Q96L42 1107 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms