RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 TTC21BQ7Z4L5 1316 aa8.86□□□□□ -0.99
VRK3-220ENST00000600259 PARP4Q9UKK3 1724 aaKnown RBP8.86□□□□□ -0.99
VRK3-220ENST00000600259 PTGER2P43116 358 aa8.86□□□□□ -0.99
VRK3-220ENST00000600259 TOM1L2Q6ZVM7 507 aa8.86□□□□□ -0.99
VRK3-220ENST00000600259 L3MBTL2Q969R5 705 aa8.86□□□□□ -0.99
VRK3-220ENST00000600259 ZNF692Q9BU19 519 aaPredicted RBP8.86□□□□□ -0.99
VRK3-220ENST00000600259 CARD10Q9BWT7 1032 aa8.86□□□□□ -0.99
VRK3-220ENST00000600259 COL18A1P39060 1754 aa8.86□□□□□ -0.99
VRK3-220ENST00000600259 NINLQ9Y2I6 1382 aa8.86□□□□□ -0.99
VRK3-220ENST00000600259 ZBTB7CA1YPR0 619 aa8.85□□□□□ -0.99
VRK3-220ENST00000600259 CDCA7Q9BWT1 371 aaPredicted RBP8.85□□□□□ -0.99
VRK3-220ENST00000600259 TXNRD1Q16881 649 aa8.84□□□□□ -0.99
VRK3-220ENST00000600259 SGIP1Q9BQI5 828 aa8.84□□□□□ -0.99
VRK3-220ENST00000600259 PPP1R1BQ9UD71 204 aaPredicted RBP8.84□□□□□ -0.99
VRK3-220ENST00000600259 EVC2Q86UK5 1308 aa8.83□□□□□ -1
VRK3-220ENST00000600259 CPSF1Q10570 1443 aaKnown RBP8.83□□□□□ -1
VRK3-220ENST00000600259 EXOC5O00471 708 aa8.83□□□□□ -1
VRK3-220ENST00000600259 ZBTB7AO95365 584 aa8.83□□□□□ -1
VRK3-220ENST00000600259 SLC15A2Q16348 729 aa8.83□□□□□ -1
VRK3-220ENST00000600259 KCNH5Q8NCM2 988 aa8.83□□□□□ -1
VRK3-220ENST00000600259 TTC21AQ8NDW8 1320 aa8.82□□□□□ -1
VRK3-220ENST00000600259 SIN3AQ96ST3 1273 aa8.82□□□□□ -1
VRK3-220ENST00000600259 ATF5Q9Y2D1 282 aaPredicted RBP8.82□□□□□ -1
VRK3-220ENST00000600259 LRRC37A3O60309 1634 aa8.82□□□□□ -1
VRK3-220ENST00000600259 SBF2Q86WG5 1849 aa8.82□□□□□ -1
VRK3-220ENST00000600259 PIK3C2AO00443 1686 aa8.81□□□□□ -1
VRK3-220ENST00000600259 USP31Q70CQ4 1352 aa8.81□□□□□ -1
VRK3-220ENST00000600259 CASZ1Q86V15 1759 aa8.81□□□□□ -1
VRK3-220ENST00000600259 NFAT5O94916 1531 aa8.8□□□□□ -1
VRK3-220ENST00000600259 SYT17Q9BSW7 474 aa8.8□□□□□ -1
VRK3-220ENST00000600259 RGPD3A6NKT7 1758 aaPredicted RBP8.8□□□□□ -1
VRK3-220ENST00000600259 RGPD4Q7Z3J3 1758 aa8.8□□□□□ -1
VRK3-220ENST00000600259 CCDC7Q96M83 1385 aa8.79□□□□□ -1
VRK3-220ENST00000600259 SOX12O15370 315 aa8.79□□□□□ -1
VRK3-220ENST00000600259 CSB-PGBD3P0DP91 1061 aa8.79□□□□□ -1
VRK3-220ENST00000600259 FHDC1Q9C0D6 1143 aaPredicted RBP8.79□□□□□ -1
VRK3-220ENST00000600259 MTFR1LQ9H019 292 aa8.79□□□□□ -1
VRK3-220ENST00000600259 LRRC4BQ9NT99 713 aa8.79□□□□□ -1
VRK3-220ENST00000600259 STK32BQ9NY57 414 aa8.79□□□□□ -1
VRK3-220ENST00000600259 ERBB3P21860 1342 aa8.79□□□□□ -1
VRK3-220ENST00000600259 QRICH2Q9H0J4 1663 aa8.78□□□□□ -1
VRK3-220ENST00000600259 KTN1Q86UP2 1357 aaKnown RBP8.78□□□□□ -1
VRK3-220ENST00000600259 SBNO2Q9Y2G9 1366 aa8.78□□□□□ -1
VRK3-220ENST00000600259 DCAF8L1A6NGE4 600 aa8.78□□□□□ -1
VRK3-220ENST00000600259 NME9Q86XW9 330 aa8.78□□□□□ -1
VRK3-220ENST00000600259 ZNF784Q8NCA9 323 aaPredicted RBP8.78□□□□□ -1
VRK3-220ENST00000600259 ACSBG1Q96GR2 724 aa8.78□□□□□ -1
VRK3-220ENST00000600259 CD163L1Q9NR16 1453 aa8.77□□□□□ -1
VRK3-220ENST00000600259 UTRNP46939 3433 aa8.77□□□□□ -1.01
VRK3-220ENST00000600259 ZNF827Q17R98 1081 aa8.77□□□□□ -1.01
VRK3-220ENST00000600259 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.77□□□□□ -1.01
VRK3-220ENST00000600259 SLC12A5Q9H2X9 1139 aa8.77□□□□□ -1.01
VRK3-220ENST00000600259 TNS2Q63HR2 1409 aa8.77□□□□□ -1.01
VRK3-220ENST00000600259 TRPM1Q7Z4N2 1603 aa8.76□□□□□ -1.01
VRK3-220ENST00000600259 ROCK2O75116 1388 aaKnown RBP8.76□□□□□ -1.01
VRK3-220ENST00000600259 IL2RBP14784 551 aa8.76□□□□□ -1.01
VRK3-220ENST00000600259 ANKRD24Q8TF21 1146 aa8.76□□□□□ -1.01
VRK3-220ENST00000600259 AKT1S1Q96B36 256 aa8.76□□□□□ -1.01
VRK3-220ENST00000600259 ARXQ96QS3 562 aa8.76□□□□□ -1.01
VRK3-220ENST00000600259 NLRP2Q9NX02 1062 aa8.76□□□□□ -1.01
VRK3-220ENST00000600259 RGPD5Q99666 1765 aa8.76□□□□□ -1.01
VRK3-220ENST00000600259 ABCC6O95255 1503 aa8.75□□□□□ -1.01
VRK3-220ENST00000600259 NEUROD1Q13562 356 aa8.75□□□□□ -1.01
VRK3-220ENST00000600259 WNK3Q9BYP7 1800 aa8.75□□□□□ -1.01
VRK3-220ENST00000600259 MYOM1P52179 1685 aa8.75□□□□□ -1.01
VRK3-220ENST00000600259 MAP3K5Q99683 1374 aa8.74□□□□□ -1.01
VRK3-220ENST00000600259 AKAP12Q02952 1782 aa8.74□□□□□ -1.01
VRK3-220ENST00000600259 IP6K1Q92551 441 aa8.74□□□□□ -1.01
VRK3-220ENST00000600259 PUS7Q96PZ0 661 aaKnown RBP8.74□□□□□ -1.01
VRK3-220ENST00000600259 PAPPAQ13219 1627 aa8.73□□□□□ -1.01
VRK3-220ENST00000600259 SLC16A10Q8TF71 515 aa8.73□□□□□ -1.01
VRK3-220ENST00000600259 NHSQ6T4R5 1651 aa8.72□□□□□ -1.01
VRK3-220ENST00000600259 FBLN1P23142 703 aa8.72□□□□□ -1.01
VRK3-220ENST00000600259 SLC27A3Q5K4L6 730 aa8.72□□□□□ -1.01
VRK3-220ENST00000600259 PNPLA7Q6ZV29 1317 aa8.72□□□□□ -1.01
VRK3-220ENST00000600259 USP54Q70EL1 1684 aa8.72□□□□□ -1.01
VRK3-220ENST00000600259 EDC4Q6P2E9 1401 aaKnown RBP8.71□□□□□ -1.01
VRK3-220ENST00000600259 PRIM1P49642 420 aaKnown RBP8.71□□□□□ -1.02
VRK3-220ENST00000600259 KCNQ4P56696 695 aa8.71□□□□□ -1.02
VRK3-220ENST00000600259 HDGFL2Q7Z4V5 671 aaPredicted RBP8.71□□□□□ -1.02
VRK3-220ENST00000600259 DDX54Q8TDD1 881 aaKnown RBP8.71□□□□□ -1.02
VRK3-220ENST00000600259 TMC1Q8TDI8 760 aa8.71□□□□□ -1.02
VRK3-220ENST00000600259 TESK2Q96S53 571 aa8.71□□□□□ -1.02
VRK3-220ENST00000600259 CARD11Q9BXL7 1154 aa8.71□□□□□ -1.02
VRK3-220ENST00000600259 A0A1W2PP64 1363 aa8.71□□□□□ -1.02
VRK3-220ENST00000600259 NSD2O96028 1365 aa8.71□□□□□ -1.02
VRK3-220ENST00000600259 MON2Q7Z3U7 1717 aa8.71□□□□□ -1.02
VRK3-220ENST00000600259 C1QTNF8P60827 252 aa8.7□□□□□ -1.02
VRK3-220ENST00000600259 TERF2IPQ9NYB0 399 aa8.7□□□□□ -1.02
VRK3-220ENST00000600259 MAP3K19Q56UN5 1328 aa8.7□□□□□ -1.02
VRK3-220ENST00000600259 HOXC9P31274 260 aa8.69□□□□□ -1.02
VRK3-220ENST00000600259 PPP4R3CPQ6ZMV5 832 aa8.69□□□□□ -1.02
VRK3-220ENST00000600259 NLGN2Q8NFZ4 835 aa8.69□□□□□ -1.02
VRK3-220ENST00000600259 ZCRB1Q8TBF4 217 aaKnown RBP8.69□□□□□ -1.02
VRK3-220ENST00000600259 LTV1Q96GA3 475 aaPredicted RBP8.69□□□□□ -1.02
VRK3-220ENST00000600259 BTAF1O14981 1849 aa8.68□□□□□ -1.02
VRK3-220ENST00000600259 GPR162Q16538 588 aa8.68□□□□□ -1.02
VRK3-220ENST00000600259 NBPF6Q5VWK0 638 aa8.68□□□□□ -1.02
VRK3-220ENST00000600259 COL23A1Q86Y22 540 aaPredicted RBP8.68□□□□□ -1.02
VRK3-220ENST00000600259 NBPF4Q96M43 638 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms