RNA–Protein interactions for RNA: ENST00000600236.1

HIF3A-217, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 3

Gene HIF3A, Length 313 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-217ENST00000600236 TERF2IPQ9NYB0 399 aa16.15■□□□□ 0.18
HIF3A-217ENST00000600236 OVOS2A0A0G2JMS6 1433 aa16.14■□□□□ 0.17
HIF3A-217ENST00000600236 OVOS2A0A0J9YW53 1432 aa16.14■□□□□ 0.17
HIF3A-217ENST00000600236 OVOS2Q6IE36 1432 aa16.14■□□□□ 0.17
HIF3A-217ENST00000600236 AKAP12Q02952 1782 aa16.14■□□□□ 0.17
HIF3A-217ENST00000600236 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.14■□□□□ 0.17
HIF3A-217ENST00000600236 CAMKK2Q96RR4 588 aa16.14■□□□□ 0.17
HIF3A-217ENST00000600236 TNS1Q9HBL0 1735 aaKnown RBP16.14■□□□□ 0.17
HIF3A-217ENST00000600236 R3HDM1Q15032 1099 aaKnown RBP16.13■□□□□ 0.17
HIF3A-217ENST00000600236 AXIN2Q9Y2T1 843 aa16.13■□□□□ 0.17
HIF3A-217ENST00000600236 USP31Q70CQ4 1352 aa16.13■□□□□ 0.17
HIF3A-217ENST00000600236 PARP4Q9UKK3 1724 aaKnown RBP16.12■□□□□ 0.17
HIF3A-217ENST00000600236 NBPF14Q5TI25 921 aa16.12■□□□□ 0.17
HIF3A-217ENST00000600236 ABCC6O95255 1503 aa16.12■□□□□ 0.17
HIF3A-217ENST00000600236 NINLQ9Y2I6 1382 aa16.12■□□□□ 0.17
HIF3A-217ENST00000600236 CARD10Q9BWT7 1032 aa16.11■□□□□ 0.17
HIF3A-217ENST00000600236 CCDC7Q96M83 1385 aa16.11■□□□□ 0.17
HIF3A-217ENST00000600236 EDC4Q6P2E9 1401 aaKnown RBP16.11■□□□□ 0.17
HIF3A-217ENST00000600236 LRP5O75197 1615 aa16.1■□□□□ 0.17
HIF3A-217ENST00000600236 NME9Q86XW9 330 aa16.1■□□□□ 0.17
HIF3A-217ENST00000600236 SLC12A5Q9H2X9 1139 aa16.1■□□□□ 0.17
HIF3A-217ENST00000600236 MON2Q7Z3U7 1717 aa16.1■□□□□ 0.17
HIF3A-217ENST00000600236 CD163L1Q9NR16 1453 aa16.1■□□□□ 0.17
HIF3A-217ENST00000600236 NFAT5O94916 1531 aa16.09■□□□□ 0.17
HIF3A-217ENST00000600236 A0A1W2PP64 1363 aa16.09■□□□□ 0.17
HIF3A-217ENST00000600236 COL18A1P39060 1754 aa16.08■□□□□ 0.17
HIF3A-217ENST00000600236 LRRC37A3O60309 1634 aa16.08■□□□□ 0.16
HIF3A-217ENST00000600236 ST20-MTHFSA0A0A6YYL1 179 aa16.07■□□□□ 0.16
HIF3A-217ENST00000600236 EXOC5O00471 708 aa16.07■□□□□ 0.16
HIF3A-217ENST00000600236 ERBB3P21860 1342 aa16.06■□□□□ 0.16
HIF3A-217ENST00000600236 TESK2Q96S53 571 aa16.06■□□□□ 0.16
HIF3A-217ENST00000600236 BCL11BQ9C0K0 894 aaPredicted RBP16.06■□□□□ 0.16
HIF3A-217ENST00000600236 BCL9O00512 1426 aa16.05■□□□□ 0.16
HIF3A-217ENST00000600236 NLRP2Q9NX02 1062 aa16.05■□□□□ 0.16
HIF3A-217ENST00000600236 USP54Q70EL1 1684 aa16.05■□□□□ 0.16
HIF3A-217ENST00000600236 PLSCR1O15162 318 aa16.04■□□□□ 0.16
HIF3A-217ENST00000600236 TMF1P82094 1093 aa16.04■□□□□ 0.16
HIF3A-217ENST00000600236 MARCH10Q8NA82 808 aaPredicted RBP16.04■□□□□ 0.16
HIF3A-217ENST00000600236 COG3Q96JB2 828 aa16.03■□□□□ 0.16
HIF3A-217ENST00000600236 TNS2Q63HR2 1409 aa16.02■□□□□ 0.16
HIF3A-217ENST00000600236 PEAK1Q9H792 1746 aa16.02■□□□□ 0.16
HIF3A-217ENST00000600236 RREB1Q92766 1687 aa16.02■□□□□ 0.16
HIF3A-217ENST00000600236 IL2RBP14784 551 aa16.02■□□□□ 0.16
HIF3A-217ENST00000600236 CDCA8Q53HL2 280 aa16.02■□□□□ 0.16
HIF3A-217ENST00000600236 ANKRD24Q8TF21 1146 aa16.02■□□□□ 0.16
HIF3A-217ENST00000600236 USP47Q96K76 1375 aa16.01■□□□□ 0.15
HIF3A-217ENST00000600236 WNK3Q9BYP7 1800 aa16.01■□□□□ 0.15
HIF3A-217ENST00000600236 ANKRD36BQ8N2N9 1353 aa16■□□□□ 0.15
HIF3A-217ENST00000600236 TIMELESSQ9UNS1 1208 aa16■□□□□ 0.15
HIF3A-217ENST00000600236 IP6K1Q92551 441 aa15.99■□□□□ 0.15
HIF3A-217ENST00000600236 NUP188Q5SRE5 1749 aa15.99■□□□□ 0.15
HIF3A-217ENST00000600236 RGPD3A6NKT7 1758 aaPredicted RBP15.98■□□□□ 0.15
HIF3A-217ENST00000600236 RGPD4Q7Z3J3 1758 aa15.98■□□□□ 0.15
HIF3A-217ENST00000600236 AMPHP49418 695 aa15.97■□□□□ 0.15
HIF3A-217ENST00000600236 RGPD5Q99666 1765 aa15.97■□□□□ 0.15
HIF3A-217ENST00000600236 CLSPNQ9HAW4 1339 aa15.96■□□□□ 0.15
HIF3A-217ENST00000600236 LTV1Q96GA3 475 aaPredicted RBP15.96■□□□□ 0.15
HIF3A-217ENST00000600236 SPON1Q9HCB6 807 aa15.96■□□□□ 0.15
HIF3A-217ENST00000600236 PPP1R1BQ9UD71 204 aaPredicted RBP15.96■□□□□ 0.15
HIF3A-217ENST00000600236 LTN1O94822 1766 aa15.95■□□□□ 0.14
HIF3A-217ENST00000600236 TXNRD1Q16881 649 aa15.95■□□□□ 0.14
HIF3A-217ENST00000600236 PTF1AQ7RTS3 328 aa15.95■□□□□ 0.14
HIF3A-217ENST00000600236 MAP3K19Q56UN5 1328 aa15.94■□□□□ 0.14
HIF3A-217ENST00000600236 KCNQ2O43526 872 aa15.94■□□□□ 0.14
HIF3A-217ENST00000600236 STK32BQ9NY57 414 aa15.94■□□□□ 0.14
HIF3A-217ENST00000600236 RTL1A6NKG5 1358 aa15.94■□□□□ 0.14
HIF3A-217ENST00000600236 HOXC9P31274 260 aa15.93■□□□□ 0.14
HIF3A-217ENST00000600236 ACSBG1Q96GR2 724 aa15.93■□□□□ 0.14
HIF3A-217ENST00000600236 SBF2Q86WG5 1849 aa15.92■□□□□ 0.14
HIF3A-217ENST00000600236 ANO8Q9HCE9 1232 aaPredicted RBP15.92■□□□□ 0.14
HIF3A-217ENST00000600236 SMG6Q86US8 1419 aaKnown RBP15.92■□□□□ 0.14
HIF3A-217ENST00000600236 FYB1O15117 783 aa15.91■□□□□ 0.14
HIF3A-217ENST00000600236 PROM2Q8N271 834 aa15.91■□□□□ 0.14
HIF3A-217ENST00000600236 PCGF6Q9BYE7 350 aa15.91■□□□□ 0.14
HIF3A-217ENST00000600236 GGNBP2Q9H3C7 697 aa15.91■□□□□ 0.14
HIF3A-217ENST00000600236 FAM208AQ9UK61 1670 aaKnown RBP15.9■□□□□ 0.14
HIF3A-217ENST00000600236 DDX54Q8TDD1 881 aaKnown RBP15.9■□□□□ 0.14
HIF3A-217ENST00000600236 SRCAPQ6ZRS2 3230 aa15.9■□□□□ 0.14
HIF3A-217ENST00000600236 NHSQ6T4R5 1651 aa15.89■□□□□ 0.13
HIF3A-217ENST00000600236 DCAF8L1A6NGE4 600 aa15.89■□□□□ 0.13
HIF3A-217ENST00000600236 RRS1Q15050 365 aaKnown RBP15.89■□□□□ 0.13
HIF3A-217ENST00000600236 SLC15A2Q16348 729 aa15.89■□□□□ 0.13
HIF3A-217ENST00000600236 FBLN1P23142 703 aa15.87■□□□□ 0.13
HIF3A-217ENST00000600236 CGNL1Q0VF96 1302 aa15.87■□□□□ 0.13
HIF3A-217ENST00000600236 KIF24Q5T7B8 1368 aa15.87■□□□□ 0.13
HIF3A-217ENST00000600236 ZCRB1Q8TBF4 217 aaKnown RBP15.86■□□□□ 0.13
HIF3A-217ENST00000600236 FLT4P35916 1363 aa15.86■□□□□ 0.13
HIF3A-217ENST00000600236 RAPGEF4Q8WZA2 1011 aa15.85■□□□□ 0.13
HIF3A-217ENST00000600236 SYTL4Q96C24 671 aaPredicted RBP15.85■□□□□ 0.13
HIF3A-217ENST00000600236 NSD3Q9BZ95 1437 aa15.85■□□□□ 0.13
HIF3A-217ENST00000600236 ZBTB7AO95365 584 aa15.84■□□□□ 0.13
HIF3A-217ENST00000600236 SLC27A3Q5K4L6 730 aa15.84■□□□□ 0.13
HIF3A-217ENST00000600236 INSRP06213 1382 aa15.84■□□□□ 0.13
HIF3A-217ENST00000600236 TATP17735 454 aaPredicted RBP15.83■□□□□ 0.12
HIF3A-217ENST00000600236 NBPF6Q5VWK0 638 aa15.83■□□□□ 0.12
HIF3A-217ENST00000600236 NBPF4Q96M43 638 aa15.83■□□□□ 0.12
HIF3A-217ENST00000600236 MTFR1LQ9H019 292 aa15.83■□□□□ 0.12
HIF3A-217ENST00000600236 MEGF6O75095 1541 aa15.82■□□□□ 0.12
HIF3A-217ENST00000600236 CASZ1Q86V15 1759 aa15.82■□□□□ 0.12
HIF3A-217ENST00000600236 PRIM1P49642 420 aaKnown RBP15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms