RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 HDGFL2Q7Z4V5 671 aaPredicted RBP17.1■□□□□ 0.33
LIG1-217ENST00000599165 KCNH5Q8NCM2 988 aa17.1■□□□□ 0.33
LIG1-217ENST00000599165 USP35Q9P2H5 1018 aa17.1■□□□□ 0.33
LIG1-217ENST00000599165 A0A0G2JS52 829 aa17.09■□□□□ 0.33
LIG1-217ENST00000599165 ZBTB7CA1YPR0 619 aa17.09■□□□□ 0.33
LIG1-217ENST00000599165 EVA1CP58658 441 aa17.09■□□□□ 0.33
LIG1-217ENST00000599165 MYT1Q01538 1121 aa17.09■□□□□ 0.33
LIG1-217ENST00000599165 TERF2IPQ9NYB0 399 aa17.09■□□□□ 0.33
LIG1-217ENST00000599165 ANKRD36BQ8N2N9 1353 aa17.09■□□□□ 0.33
LIG1-217ENST00000599165 LRRC37A3O60309 1634 aa17.09■□□□□ 0.33
LIG1-217ENST00000599165 RGPD1P0DJD0 1748 aa17.08■□□□□ 0.32
LIG1-217ENST00000599165 TMF1P82094 1093 aa17.08■□□□□ 0.32
LIG1-217ENST00000599165 CCDC125Q86Z20 511 aa17.08■□□□□ 0.32
LIG1-217ENST00000599165 TCP11L2Q8N4U5 519 aa17.08■□□□□ 0.32
LIG1-217ENST00000599165 DEFB132Q7Z7B7 95 aa17.07■□□□□ 0.32
LIG1-217ENST00000599165 PEAK1Q9H792 1746 aa17.07■□□□□ 0.32
LIG1-217ENST00000599165 WDR17Q8IZU2 1322 aa17.06■□□□□ 0.32
LIG1-217ENST00000599165 SLC24A1O60721 1099 aa17.06■□□□□ 0.32
LIG1-217ENST00000599165 THRAP3Q9Y2W1 955 aaKnown RBP17.05■□□□□ 0.32
LIG1-217ENST00000599165 KIF20BQ96Q89 1820 aa17.05■□□□□ 0.32
LIG1-217ENST00000599165 DISP2A7MBM2 1401 aa17.04■□□□□ 0.32
LIG1-217ENST00000599165 FBLN1P23142 703 aa17.02■□□□□ 0.32
LIG1-217ENST00000599165 CARD14Q9BXL6 1004 aa17.02■□□□□ 0.32
LIG1-217ENST00000599165 SBF2Q86WG5 1849 aa17.02■□□□□ 0.31
LIG1-217ENST00000599165 TOM1L2Q6ZVM7 507 aa17.01■□□□□ 0.31
LIG1-217ENST00000599165 ERBB3P21860 1342 aa17■□□□□ 0.31
LIG1-217ENST00000599165 FYB1O15117 783 aa17■□□□□ 0.31
LIG1-217ENST00000599165 HSPA5P11021 654 aaKnown RBP17■□□□□ 0.31
LIG1-217ENST00000599165 CARD10Q9BWT7 1032 aa17■□□□□ 0.31
LIG1-217ENST00000599165 RGPD2P0DJD1 1756 aa17■□□□□ 0.31
LIG1-217ENST00000599165 CDCA8Q53HL2 280 aa16.98■□□□□ 0.31
LIG1-217ENST00000599165 MAP3K19Q56UN5 1328 aa16.97■□□□□ 0.31
LIG1-217ENST00000599165 FAM196AQ6ZSG2 479 aa16.97■□□□□ 0.31
LIG1-217ENST00000599165 GGNBP2Q9H3C7 697 aa16.97■□□□□ 0.31
LIG1-217ENST00000599165 FAM208AQ9UK61 1670 aaKnown RBP16.97■□□□□ 0.31
LIG1-217ENST00000599165 NSD3Q9BZ95 1437 aa16.96■□□□□ 0.31
LIG1-217ENST00000599165 TRIM37O94972 964 aa16.96■□□□□ 0.31
LIG1-217ENST00000599165 PDE3BQ13370 1112 aa16.96■□□□□ 0.31
LIG1-217ENST00000599165 COG3Q96JB2 828 aa16.96■□□□□ 0.31
LIG1-217ENST00000599165 RREB1Q92766 1687 aa16.96■□□□□ 0.31
LIG1-217ENST00000599165 CCDC7Q96M83 1385 aa16.95■□□□□ 0.3
LIG1-217ENST00000599165 C11orf95C9JLR9 678 aaPredicted RBP16.95■□□□□ 0.3
LIG1-217ENST00000599165 CSB-PGBD3P0DP91 1061 aa16.95■□□□□ 0.3
LIG1-217ENST00000599165 EIF4G2P78344 907 aaKnown RBP eCLIP16.95■□□□□ 0.31e-11■■■■■ 55.3
LIG1-217ENST00000599165 EN1Q05925 392 aaPredicted RBP16.95■□□□□ 0.3
LIG1-217ENST00000599165 ANKRD24Q8TF21 1146 aa16.95■□□□□ 0.3
LIG1-217ENST00000599165 IP6K1Q92551 441 aa16.95■□□□□ 0.3
LIG1-217ENST00000599165 SF3B2Q13435 895 aaKnown RBP16.94■□□□□ 0.3
LIG1-217ENST00000599165 OVOS2A0A0G2JMS6 1433 aa16.94■□□□□ 0.3
LIG1-217ENST00000599165 ANKRD26Q9UPS8 1709 aa16.93■□□□□ 0.3
LIG1-217ENST00000599165 HOXC9P31274 260 aa16.93■□□□□ 0.3
LIG1-217ENST00000599165 BAG6P46379 1132 aa16.93■□□□□ 0.3
LIG1-217ENST00000599165 DDB1Q16531 1140 aa16.93■□□□□ 0.3
LIG1-217ENST00000599165 MARCH10Q8NA82 808 aaPredicted RBP16.93■□□□□ 0.3
LIG1-217ENST00000599165 TNS2Q63HR2 1409 aa16.93■□□□□ 0.3
LIG1-217ENST00000599165 NUP188Q5SRE5 1749 aa16.93■□□□□ 0.3
LIG1-217ENST00000599165 RRS1Q15050 365 aaKnown RBP16.92■□□□□ 0.3
LIG1-217ENST00000599165 PTF1AQ7RTS3 328 aa16.92■□□□□ 0.3
LIG1-217ENST00000599165 CAMKK2Q96RR4 588 aa16.92■□□□□ 0.3
LIG1-217ENST00000599165 CDCA7Q9BWT1 371 aaPredicted RBP16.92■□□□□ 0.3
LIG1-217ENST00000599165 BCL9O00512 1426 aa16.92■□□□□ 0.3
LIG1-217ENST00000599165 SHANK3Q9BYB0 1731 aa16.92■□□□□ 0.3
LIG1-217ENST00000599165 EZH2Q15910 746 aaKnown RBP16.91■□□□□ 0.3
LIG1-217ENST00000599165 SRCAPQ6ZRS2 3230 aa16.91■□□□□ 0.3
LIG1-217ENST00000599165 RTL1A6NKG5 1358 aa16.9■□□□□ 0.3
LIG1-217ENST00000599165 RGPD3A6NKT7 1758 aaPredicted RBP16.9■□□□□ 0.3
LIG1-217ENST00000599165 RGPD4Q7Z3J3 1758 aa16.9■□□□□ 0.3
LIG1-217ENST00000599165 NLRP2Q9NX02 1062 aa16.9■□□□□ 0.3
LIG1-217ENST00000599165 MAP2P11137 1827 aaKnown RBP16.89■□□□□ 0.29
LIG1-217ENST00000599165 APBA3O96018 575 aa16.88■□□□□ 0.29
LIG1-217ENST00000599165 LTV1Q96GA3 475 aaPredicted RBP16.88■□□□□ 0.29
LIG1-217ENST00000599165 NHSQ6T4R5 1651 aa16.87■□□□□ 0.29
LIG1-217ENST00000599165 MEGF6O75095 1541 aa16.86■□□□□ 0.29
LIG1-217ENST00000599165 IL2RBP14784 551 aa16.86■□□□□ 0.29
LIG1-217ENST00000599165 AMPHP49418 695 aa16.86■□□□□ 0.29
LIG1-217ENST00000599165 POLR3GLQ9BT43 218 aa16.86■□□□□ 0.29
LIG1-217ENST00000599165 EXOC5O00471 708 aa16.85■□□□□ 0.29
LIG1-217ENST00000599165 HSP90AB2PQ58FF8 381 aa16.85■□□□□ 0.29
LIG1-217ENST00000599165 EMILIN1Q9Y6C2 1016 aa16.85■□□□□ 0.29
LIG1-217ENST00000599165 PARD3Q8TEW0 1356 aa16.85■□□□□ 0.29
LIG1-217ENST00000599165 NBPF6Q5VWK0 638 aa16.84■□□□□ 0.29
LIG1-217ENST00000599165 NBPF4Q96M43 638 aa16.84■□□□□ 0.29
LIG1-217ENST00000599165 PANK3Q9H999 370 aa16.84■□□□□ 0.29
LIG1-217ENST00000599165 INSRP06213 1382 aa16.84■□□□□ 0.29
LIG1-217ENST00000599165 FLT4P35916 1363 aa16.84■□□□□ 0.29
LIG1-217ENST00000599165 KIF24Q5T7B8 1368 aa16.84■□□□□ 0.29
LIG1-217ENST00000599165 PSDA5PKW4 1024 aaPredicted RBP16.83■□□□□ 0.28
LIG1-217ENST00000599165 CGNL1Q0VF96 1302 aa16.83■□□□□ 0.28
LIG1-217ENST00000599165 BCL11BQ9C0K0 894 aaPredicted RBP16.83■□□□□ 0.28
LIG1-217ENST00000599165 NCAPD2Q15021 1401 aa16.82■□□□□ 0.28
LIG1-217ENST00000599165 KIF7Q2M1P5 1343 aa16.82■□□□□ 0.28
LIG1-217ENST00000599165 KCNQ2O43526 872 aa16.82■□□□□ 0.28
LIG1-217ENST00000599165 BTAF1O14981 1849 aa16.82■□□□□ 0.28
LIG1-217ENST00000599165 LRP5O75197 1615 aa16.81■□□□□ 0.28
LIG1-217ENST00000599165 PROM2Q8N271 834 aa16.8■□□□□ 0.28
LIG1-217ENST00000599165 USHBP1Q8N6Y0 703 aa16.8■□□□□ 0.28
LIG1-217ENST00000599165 KAT6BQ8WYB5 2073 aa16.8■□□□□ 0.28
LIG1-217ENST00000599165 DOT1LQ8TEK3 1739 aa16.79■□□□□ 0.28
LIG1-217ENST00000599165 PLSCR1O15162 318 aa16.79■□□□□ 0.28
LIG1-217ENST00000599165 R3HDM1Q15032 1099 aaKnown RBP16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 109 ms