RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 OVOS2A0A0J9YW53 1432 aa25.04■■□□□ 1.6
LIG1-216ENST00000598938 OVOS2Q6IE36 1432 aa25.04■■□□□ 1.6
LIG1-216ENST00000598938 EN1Q05925 392 aaPredicted RBP25.03■■□□□ 1.6
LIG1-216ENST00000598938 FYB1O15117 783 aa25.02■■□□□ 1.6
LIG1-216ENST00000598938 PRDM11Q9NQV5 511 aa25.02■■□□□ 1.6
LIG1-216ENST00000598938 KIF20BQ96Q89 1820 aa25.02■■□□□ 1.6
LIG1-216ENST00000598938 PARD3Q8TEW0 1356 aa25.02■■□□□ 1.6
LIG1-216ENST00000598938 GCP02774 474 aa25.01■■□□□ 1.59
LIG1-216ENST00000598938 CGNL1Q0VF96 1302 aa24.99■■□□□ 1.59
LIG1-216ENST00000598938 SPATA31A1Q5TZJ5 1347 aa24.99■■□□□ 1.59
LIG1-216ENST00000598938 RREB1Q92766 1687 aa24.99■■□□□ 1.59
LIG1-216ENST00000598938 NFAT5O94916 1531 aa24.98■■□□□ 1.59
LIG1-216ENST00000598938 CPDO75976 1380 aa24.97■■□□□ 1.59
LIG1-216ENST00000598938 FAM196AQ6ZSG2 479 aa24.97■■□□□ 1.59
LIG1-216ENST00000598938 KCNH5Q8NCM2 988 aa24.97■■□□□ 1.59
LIG1-216ENST00000598938 COG3Q96JB2 828 aa24.97■■□□□ 1.59
LIG1-216ENST00000598938 GGNBP2Q9H3C7 697 aa24.97■■□□□ 1.59
LIG1-216ENST00000598938 KIAA0232Q92628 1395 aa24.96■■□□□ 1.59
LIG1-216ENST00000598938 PER1O15534 1290 aaPredicted RBP24.96■■□□□ 1.59
LIG1-216ENST00000598938 R3HDM1Q15032 1099 aaKnown RBP24.96■■□□□ 1.59
LIG1-216ENST00000598938 FAM182BQ5T319 152 aa24.96■■□□□ 1.59
LIG1-216ENST00000598938 ZC3H6P61129 1189 aaKnown RBP24.94■■□□□ 1.58
LIG1-216ENST00000598938 KNSTRNQ9Y448 316 aa24.94■■□□□ 1.58
LIG1-216ENST00000598938 CAMKK2Q96RR4 588 aa24.93■■□□□ 1.58
LIG1-216ENST00000598938 NSD2O96028 1365 aa24.93■■□□□ 1.58
LIG1-216ENST00000598938 NUP188Q5SRE5 1749 aa24.92■■□□□ 1.58
LIG1-216ENST00000598938 ANKRD26Q9UPS8 1709 aa24.92■■□□□ 1.58
LIG1-216ENST00000598938 EZH2Q15910 746 aaKnown RBP24.92■■□□□ 1.58
LIG1-216ENST00000598938 BARGINQ6ZT62 677 aa24.91■■□□□ 1.58
LIG1-216ENST00000598938 LMO7Q8WWI1 1683 aa24.91■■□□□ 1.58
LIG1-216ENST00000598938 SOX12O15370 315 aa24.9■■□□□ 1.58
LIG1-216ENST00000598938 AMER1Q5JTC6 1135 aaPredicted RBP24.9■■□□□ 1.58
LIG1-216ENST00000598938 ZNF316A6NFI3 1004 aaPredicted RBP24.89■■□□□ 1.58
LIG1-216ENST00000598938 TRIM37O94972 964 aa24.89■■□□□ 1.58
LIG1-216ENST00000598938 ARHGEF25Q86VW2 580 aa24.89■■□□□ 1.58
LIG1-216ENST00000598938 CHRNA2Q15822 529 aa24.88■■□□□ 1.57
LIG1-216ENST00000598938 PARP4Q9UKK3 1724 aaKnown RBP24.88■■□□□ 1.57
LIG1-216ENST00000598938 STRN4Q9NRL3 753 aa24.87■■□□□ 1.57
LIG1-216ENST00000598938 AATKQ6ZMQ8 1374 aa24.87■■□□□ 1.57
LIG1-216ENST00000598938 COL18A1P39060 1754 aa24.86■■□□□ 1.57
LIG1-216ENST00000598938 NPC1L1Q9UHC9 1359 aa24.86■■□□□ 1.57
LIG1-216ENST00000598938 ABCC6O95255 1503 aa24.86■■□□□ 1.57
LIG1-216ENST00000598938 RGPD3A6NKT7 1758 aaPredicted RBP24.85■■□□□ 1.57
LIG1-216ENST00000598938 RGPD4Q7Z3J3 1758 aa24.85■■□□□ 1.57
LIG1-216ENST00000598938 APBA3O96018 575 aa24.85■■□□□ 1.57
LIG1-216ENST00000598938 CAMTA1Q9Y6Y1 1673 aa24.85■■□□□ 1.57
LIG1-216ENST00000598938 LTN1O94822 1766 aa24.84■■□□□ 1.57
LIG1-216ENST00000598938 DDX10Q13206 875 aaKnown RBP24.83■■□□□ 1.57
LIG1-216ENST00000598938 PDE3BQ13370 1112 aa24.83■■□□□ 1.57
LIG1-216ENST00000598938 THRAP3Q9Y2W1 955 aaKnown RBP24.83■■□□□ 1.57
LIG1-216ENST00000598938 ZBTB7CA1YPR0 619 aa24.82■■□□□ 1.56
LIG1-216ENST00000598938 FBLN1P23142 703 aa24.82■■□□□ 1.56
LIG1-216ENST00000598938 EVA1CP58658 441 aa24.81■■□□□ 1.56
LIG1-216ENST00000598938 MAP3K19Q56UN5 1328 aa24.81■■□□□ 1.56
LIG1-216ENST00000598938 NBPF14Q5TI25 921 aa24.8■■□□□ 1.56
LIG1-216ENST00000598938 MORC1Q86VD1 984 aa24.8■■□□□ 1.56
LIG1-216ENST00000598938 TCP11L2Q8N4U5 519 aa24.8■■□□□ 1.56
LIG1-216ENST00000598938 USP35Q9P2H5 1018 aa24.79■■□□□ 1.56
LIG1-216ENST00000598938 AXIN2Q9Y2T1 843 aa24.79■■□□□ 1.56
LIG1-216ENST00000598938 COL5A2P05997 1499 aaPredicted RBP24.78■■□□□ 1.56
LIG1-216ENST00000598938 RRS1Q15050 365 aaKnown RBP24.78■■□□□ 1.56
LIG1-216ENST00000598938 RTL1A6NKG5 1358 aa24.78■■□□□ 1.56
LIG1-216ENST00000598938 CC2D1BQ5T0F9 858 aaKnown RBP24.77■■□□□ 1.56
LIG1-216ENST00000598938 PEAK1Q9H792 1746 aa24.76■■□□□ 1.55
LIG1-216ENST00000598938 LARP1Q6PKG0 1096 aaKnown RBP24.76■■□□□ 1.55
LIG1-216ENST00000598938 IP6K1Q92551 441 aa24.76■■□□□ 1.55
LIG1-216ENST00000598938 KIF24Q5T7B8 1368 aa24.76■■□□□ 1.55
LIG1-216ENST00000598938 SBF2Q86WG5 1849 aa24.75■■□□□ 1.55
LIG1-216ENST00000598938 TNNT2P45379 298 aaPredicted RBP24.75■■□□□ 1.55
LIG1-216ENST00000598938 RGPD5Q99666 1765 aa24.75■■□□□ 1.55
LIG1-216ENST00000598938 OVOS2A0A0G2JMS6 1433 aa24.73■■□□□ 1.55
LIG1-216ENST00000598938 CRB1P82279 1406 aa24.73■■□□□ 1.55
LIG1-216ENST00000598938 SMG6Q86US8 1419 aaKnown RBP24.73■■□□□ 1.55
LIG1-216ENST00000598938 HOXC9P31274 260 aa24.73■■□□□ 1.55
LIG1-216ENST00000598938 AMPHP49418 695 aa24.73■■□□□ 1.55
LIG1-216ENST00000598938 POLKQ9UBT6 870 aa24.73■■□□□ 1.55
LIG1-216ENST00000598938 EMILIN1Q9Y6C2 1016 aa24.73■■□□□ 1.55
LIG1-216ENST00000598938 WNK3Q9BYP7 1800 aa24.72■■□□□ 1.55
LIG1-216ENST00000598938 LRRC37A3O60309 1634 aa24.72■■□□□ 1.55
LIG1-216ENST00000598938 MAP2P11137 1827 aaKnown RBP24.72■■□□□ 1.55
LIG1-216ENST00000598938 FLT4P35916 1363 aa24.71■■□□□ 1.55
LIG1-216ENST00000598938 SPON1Q9HCB6 807 aa24.71■■□□□ 1.55
LIG1-216ENST00000598938 ERBB3P21860 1342 aa24.69■■□□□ 1.54
LIG1-216ENST00000598938 WDR17Q8IZU2 1322 aa24.69■■□□□ 1.54
LIG1-216ENST00000598938 CNGB1Q14028 1251 aaPredicted RBP24.69■■□□□ 1.54
LIG1-216ENST00000598938 INSRP06213 1382 aa24.68■■□□□ 1.54
LIG1-216ENST00000598938 ANKRD24Q8TF21 1146 aa24.68■■□□□ 1.54
LIG1-216ENST00000598938 KCNQ2O43526 872 aa24.67■■□□□ 1.54
LIG1-216ENST00000598938 YY1P25490 414 aa24.67■■□□□ 1.54
LIG1-216ENST00000598938 CASZ1Q86V15 1759 aa24.67■■□□□ 1.54
LIG1-216ENST00000598938 PLSCR1O15162 318 aa24.66■■□□□ 1.54
LIG1-216ENST00000598938 HSP90AB2PQ58FF8 381 aa24.66■■□□□ 1.54
LIG1-216ENST00000598938 PPM1GO15355 546 aaPredicted RBP24.65■■□□□ 1.54
LIG1-216ENST00000598938 PPP1R1BQ9UD71 204 aaPredicted RBP24.65■■□□□ 1.54
LIG1-216ENST00000598938 BCL9O00512 1426 aa24.64■■□□□ 1.54
LIG1-216ENST00000598938 DCAF8L1A6NGE4 600 aa24.64■■□□□ 1.54
LIG1-216ENST00000598938 FAM208AQ9UK61 1670 aaKnown RBP24.64■■□□□ 1.53
LIG1-216ENST00000598938 CSB-PGBD3P0DP91 1061 aa24.63■■□□□ 1.53
LIG1-216ENST00000598938 TOM1L2Q6ZVM7 507 aa24.63■■□□□ 1.53
LIG1-216ENST00000598938 LTV1Q96GA3 475 aaPredicted RBP24.61■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms