RNA–Protein interactions for RNA: ENST00000597146.1

LIG1-214, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 589 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-214ENST00000597146 KDM2AQ9Y2K7 1162 aa22.87■■□□□ 1.25
LIG1-214ENST00000597146 GCP02774 474 aa22.86■■□□□ 1.25
LIG1-214ENST00000597146 SGIP1Q9BQI5 828 aa22.85■■□□□ 1.25
LIG1-214ENST00000597146 GOLGB1Q14789 3259 aaKnown RBP22.84■■□□□ 1.25
LIG1-214ENST00000597146 PAPPAQ13219 1627 aa22.84■■□□□ 1.25
LIG1-214ENST00000597146 SLC15A2Q16348 729 aa22.84■■□□□ 1.25
LIG1-214ENST00000597146 TXNRD1Q16881 649 aa22.84■■□□□ 1.25
LIG1-214ENST00000597146 MARCH10Q8NA82 808 aaPredicted RBP22.84■■□□□ 1.25
LIG1-214ENST00000597146 MTFR1LQ9H019 292 aa22.84■■□□□ 1.25
LIG1-214ENST00000597146 SLIT3O75094 1523 aa22.83■■□□□ 1.25
LIG1-214ENST00000597146 NHSQ6T4R5 1651 aa22.82■■□□□ 1.24
LIG1-214ENST00000597146 PLEKHG3A1L390 1219 aa22.82■■□□□ 1.24
LIG1-214ENST00000597146 NLRP13Q86W25 1043 aa22.82■■□□□ 1.24
LIG1-214ENST00000597146 DCAF11Q8TEB1 546 aa22.82■■□□□ 1.24
LIG1-214ENST00000597146 CCDC61Q9Y6R9 512 aa22.82■■□□□ 1.24
LIG1-214ENST00000597146 BCL9O00512 1426 aa22.82■■□□□ 1.24
LIG1-214ENST00000597146 TOM1L2Q6ZVM7 507 aa22.81■■□□□ 1.24
LIG1-214ENST00000597146 SHANK3Q9BYB0 1731 aa22.81■■□□□ 1.24
LIG1-214ENST00000597146 PIK3C2AO00443 1686 aa22.8■■□□□ 1.24
LIG1-214ENST00000597146 AATKQ6ZMQ8 1374 aa22.79■■□□□ 1.24
LIG1-214ENST00000597146 GIGYF1O75420 1035 aaPredicted RBP22.79■■□□□ 1.24
LIG1-214ENST00000597146 PPIP5K1Q6PFW1 1433 aa22.79■■□□□ 1.24
LIG1-214ENST00000597146 ARXQ96QS3 562 aa22.78■■□□□ 1.24
LIG1-214ENST00000597146 MAP3K5Q99683 1374 aa22.77■■□□□ 1.24
LIG1-214ENST00000597146 WDR17Q8IZU2 1322 aa22.76■■□□□ 1.23
LIG1-214ENST00000597146 BTAF1O14981 1849 aa22.75■■□□□ 1.23
LIG1-214ENST00000597146 QRICH2Q9H0J4 1663 aa22.74■■□□□ 1.23
LIG1-214ENST00000597146 AXIN2Q9Y2T1 843 aa22.74■■□□□ 1.23
LIG1-214ENST00000597146 GPR162Q16538 588 aa22.73■■□□□ 1.23
LIG1-214ENST00000597146 CPSF1Q10570 1443 aaKnown RBP22.73■■□□□ 1.23
LIG1-214ENST00000597146 USP6P35125 1406 aa22.72■■□□□ 1.23
LIG1-214ENST00000597146 TRPM1Q7Z4N2 1603 aa22.71■■□□□ 1.23
LIG1-214ENST00000597146 COL24A1Q17RW2 1714 aa22.71■■□□□ 1.23
LIG1-214ENST00000597146 KIAA1210Q9ULL0 1709 aa22.71■■□□□ 1.23
LIG1-214ENST00000597146 TUBGCP6Q96RT7 1819 aa22.71■■□□□ 1.23
LIG1-214ENST00000597146 NLRP6P59044 892 aa22.71■■□□□ 1.23
LIG1-214ENST00000597146 CDCA7Q9BWT1 371 aaPredicted RBP22.71■■□□□ 1.23
LIG1-214ENST00000597146 TNS2Q63HR2 1409 aa22.71■■□□□ 1.23
LIG1-214ENST00000597146 QSER1Q2KHR3 1735 aa22.71■■□□□ 1.23
LIG1-214ENST00000597146 KLHL34Q8N239 644 aa22.7■■□□□ 1.22
LIG1-214ENST00000597146 SRPK2P78362 688 aaKnown RBP22.69■■□□□ 1.22
LIG1-214ENST00000597146 ZNF827Q17R98 1081 aa22.69■■□□□ 1.22
LIG1-214ENST00000597146 KAT6BQ8WYB5 2073 aa22.69■■□□□ 1.22
LIG1-214ENST00000597146 PELP1Q8IZL8 1130 aaKnown RBP22.68■■□□□ 1.22
LIG1-214ENST00000597146 ABCC6O95255 1503 aa22.67■■□□□ 1.22
LIG1-214ENST00000597146 BRD4O60885 1362 aaPredicted RBP22.67■■□□□ 1.22
LIG1-214ENST00000597146 ACSBG1Q96GR2 724 aa22.67■■□□□ 1.22
LIG1-214ENST00000597146 CABP2Q9NPB3 220 aa22.67■■□□□ 1.22
LIG1-214ENST00000597146 CSB-PGBD3P0DP91 1061 aa22.65■■□□□ 1.22
LIG1-214ENST00000597146 CARD10Q9BWT7 1032 aa22.65■■□□□ 1.22
LIG1-214ENST00000597146 RAB3GAP2Q9H2M9 1393 aa22.64■■□□□ 1.22
LIG1-214ENST00000597146 EXOC5O00471 708 aa22.64■■□□□ 1.21
LIG1-214ENST00000597146 STAC3Q96MF2 364 aa22.63■■□□□ 1.21
LIG1-214ENST00000597146 NFAT5O94916 1531 aa22.62■■□□□ 1.21
LIG1-214ENST00000597146 SOX12O15370 315 aa22.62■■□□□ 1.21
LIG1-214ENST00000597146 ARHGEF25Q86VW2 580 aa22.61■■□□□ 1.21
LIG1-214ENST00000597146 NLGN2Q8NFZ4 835 aa22.61■■□□□ 1.21
LIG1-214ENST00000597146 LRRC4BQ9NT99 713 aa22.6■■□□□ 1.21
LIG1-214ENST00000597146 CABP1Q9NZU7 370 aa22.6■■□□□ 1.21
LIG1-214ENST00000597146 CCDC7Q96M83 1385 aa22.6■■□□□ 1.21
LIG1-214ENST00000597146 NBPF1Q3BBV0 1214 aa22.57■■□□□ 1.2
LIG1-214ENST00000597146 ATP10DQ9P241 1426 aa22.57■■□□□ 1.2
LIG1-214ENST00000597146 CENPJQ9HC77 1338 aaPredicted RBP22.57■■□□□ 1.2
LIG1-214ENST00000597146 LTN1O94822 1766 aa22.56■■□□□ 1.2
LIG1-214ENST00000597146 POLD1P28340 1107 aa22.56■■□□□ 1.2
LIG1-214ENST00000597146 YBX3P16989 372 aaKnown RBP eCLIP22.55■■□□□ 1.2
LIG1-214ENST00000597146 AKT1S1Q96B36 256 aa22.55■■□□□ 1.2
LIG1-214ENST00000597146 PNPLA7Q6ZV29 1317 aa22.55■■□□□ 1.2
LIG1-214ENST00000597146 KCNH5Q8NCM2 988 aa22.52■■□□□ 1.2
LIG1-214ENST00000597146 SLC16A10Q8TF71 515 aa22.52■■□□□ 1.2
LIG1-214ENST00000597146 TTC21BQ7Z4L5 1316 aa22.52■■□□□ 1.2
LIG1-214ENST00000597146 LY75O60449 1722 aa22.51■■□□□ 1.19
LIG1-214ENST00000597146 DOT1LQ8TEK3 1739 aa22.51■■□□□ 1.19
LIG1-214ENST00000597146 MON2Q7Z3U7 1717 aa22.49■■□□□ 1.19
LIG1-214ENST00000597146 KCNQ4P56696 695 aa22.48■■□□□ 1.19
LIG1-214ENST00000597146 USP54Q70EL1 1684 aa22.48■■□□□ 1.19
LIG1-214ENST00000597146 NLRP2Q9NX02 1062 aa22.47■■□□□ 1.19
LIG1-214ENST00000597146 ERBB3P21860 1342 aa22.47■■□□□ 1.19
LIG1-214ENST00000597146 GRIN3BO60391 1043 aa22.46■■□□□ 1.19
LIG1-214ENST00000597146 IL2RBP14784 551 aa22.46■■□□□ 1.19
LIG1-214ENST00000597146 TFCP2L1Q9NZI6 479 aa22.46■■□□□ 1.19
LIG1-214ENST00000597146 HSPA6P17066 643 aa22.45■■□□□ 1.18
LIG1-214ENST00000597146 SLC27A3Q5K4L6 730 aa22.44■■□□□ 1.18
LIG1-214ENST00000597146 GPBP1L1Q9HC44 474 aaPredicted RBP22.44■■□□□ 1.18
LIG1-214ENST00000597146 ADCY9O60503 1353 aa22.43■■□□□ 1.18
LIG1-214ENST00000597146 TTC21AQ8NDW8 1320 aa22.43■■□□□ 1.18
LIG1-214ENST00000597146 ZNF526Q8TF50 670 aaPredicted RBP22.43■■□□□ 1.18
LIG1-214ENST00000597146 EVC2Q86UK5 1308 aa22.39■■□□□ 1.18
LIG1-214ENST00000597146 FAM208AQ9UK61 1670 aaKnown RBP22.39■■□□□ 1.17
LIG1-214ENST00000597146 KTN1Q86UP2 1357 aaKnown RBP22.38■■□□□ 1.17
LIG1-214ENST00000597146 MSL1Q68DK7 614 aa22.38■■□□□ 1.17
LIG1-214ENST00000597146 ANKRD24Q8TF21 1146 aa22.38■■□□□ 1.17
LIG1-214ENST00000597146 ZNF692Q9BU19 519 aaPredicted RBP22.38■■□□□ 1.17
LIG1-214ENST00000597146 NSD2O96028 1365 aa22.38■■□□□ 1.17
LIG1-214ENST00000597146 C5P01031 1676 aa22.37■■□□□ 1.17
LIG1-214ENST00000597146 MSH5O43196 834 aa22.36■■□□□ 1.17
LIG1-214ENST00000597146 DDX54Q8TDD1 881 aaKnown RBP22.36■■□□□ 1.17
LIG1-214ENST00000597146 SYTL4Q96C24 671 aaPredicted RBP22.36■■□□□ 1.17
LIG1-214ENST00000597146 RGPD2P0DJD1 1756 aa22.35■■□□□ 1.17
LIG1-214ENST00000597146 COL23A1Q86Y22 540 aaPredicted RBP22.35■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms