RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 WNK3Q9BYP7 1800 aa14.87□□□□□ -0.03
LIG1-213ENST00000596672 LRRC37A3O60309 1634 aa14.87□□□□□ -0.03
LIG1-213ENST00000596672 FBLN1P23142 703 aa14.86□□□□□ -0.03
LIG1-213ENST00000596672 CAMKK2Q96RR4 588 aa14.86□□□□□ -0.03
LIG1-213ENST00000596672 SBF2Q86WG5 1849 aa14.86□□□□□ -0.03
LIG1-213ENST00000596672 WDR17Q8IZU2 1322 aa14.86□□□□□ -0.03
LIG1-213ENST00000596672 DISP2A7MBM2 1401 aa14.85□□□□□ -0.03
LIG1-213ENST00000596672 EZH2Q15910 746 aaKnown RBP14.85□□□□□ -0.03
LIG1-213ENST00000596672 PUS7Q96PZ0 661 aaKnown RBP14.85□□□□□ -0.03
LIG1-213ENST00000596672 LTN1O94822 1766 aa14.85□□□□□ -0.03
LIG1-213ENST00000596672 OVOS2A0A0J9YW53 1432 aa14.84□□□□□ -0.03
LIG1-213ENST00000596672 OVOS2Q6IE36 1432 aa14.84□□□□□ -0.03
LIG1-213ENST00000596672 PSDA5PKW4 1024 aaPredicted RBP14.84□□□□□ -0.03
LIG1-213ENST00000596672 THRAP3Q9Y2W1 955 aaKnown RBP14.84□□□□□ -0.03
LIG1-213ENST00000596672 USP47Q96K76 1375 aa14.84□□□□□ -0.03
LIG1-213ENST00000596672 EDC4Q6P2E9 1401 aaKnown RBP14.83□□□□□ -0.03
LIG1-213ENST00000596672 FAM196AQ6ZSG2 479 aa14.83□□□□□ -0.04
LIG1-213ENST00000596672 KCNH5Q8NCM2 988 aa14.83□□□□□ -0.04
LIG1-213ENST00000596672 PCGF6Q9BYE7 350 aa14.83□□□□□ -0.04
LIG1-213ENST00000596672 BAG6P46379 1132 aa14.82□□□□□ -0.04
LIG1-213ENST00000596672 SF3B2Q13435 895 aaKnown RBP14.82□□□□□ -0.04
LIG1-213ENST00000596672 TOM1L2Q6ZVM7 507 aa14.82□□□□□ -0.04
LIG1-213ENST00000596672 MARCH10Q8NA82 808 aaPredicted RBP14.82□□□□□ -0.04
LIG1-213ENST00000596672 PDE3BQ13370 1112 aa14.81□□□□□ -0.04
LIG1-213ENST00000596672 CARD10Q9BWT7 1032 aa14.81□□□□□ -0.04
LIG1-213ENST00000596672 RREB1Q92766 1687 aa14.81□□□□□ -0.04
LIG1-213ENST00000596672 HDGFL2Q7Z4V5 671 aaPredicted RBP14.8□□□□□ -0.04
LIG1-213ENST00000596672 APBA3O96018 575 aa14.79□□□□□ -0.04
LIG1-213ENST00000596672 MYOM1P52179 1685 aa14.79□□□□□ -0.04
LIG1-213ENST00000596672 NUP188Q5SRE5 1749 aa14.79□□□□□ -0.04
LIG1-213ENST00000596672 RGPD2P0DJD1 1756 aa14.78□□□□□ -0.04
LIG1-213ENST00000596672 ABCC6O95255 1503 aa14.78□□□□□ -0.04
LIG1-213ENST00000596672 ERBB3P21860 1342 aa14.78□□□□□ -0.04
LIG1-213ENST00000596672 CARD14Q9BXL6 1004 aa14.78□□□□□ -0.04
LIG1-213ENST00000596672 TERF2IPQ9NYB0 399 aa14.78□□□□□ -0.04
LIG1-213ENST00000596672 R3HDM1Q15032 1099 aaKnown RBP14.77□□□□□ -0.05
LIG1-213ENST00000596672 DDB1Q16531 1140 aa14.77□□□□□ -0.05
LIG1-213ENST00000596672 ANKRD36BQ8N2N9 1353 aa14.76□□□□□ -0.05
LIG1-213ENST00000596672 FYB1O15117 783 aa14.76□□□□□ -0.05
LIG1-213ENST00000596672 CSB-PGBD3P0DP91 1061 aa14.76□□□□□ -0.05
LIG1-213ENST00000596672 PROM2Q8N271 834 aa14.76□□□□□ -0.05
LIG1-213ENST00000596672 MAP3K19Q56UN5 1328 aa14.75□□□□□ -0.05
LIG1-213ENST00000596672 ANKRD24Q8TF21 1146 aa14.75□□□□□ -0.05
LIG1-213ENST00000596672 OVOS2A0A0G2JMS6 1433 aa14.75□□□□□ -0.05
LIG1-213ENST00000596672 NINLQ9Y2I6 1382 aa14.74□□□□□ -0.05
LIG1-213ENST00000596672 KCNQ2O43526 872 aa14.74□□□□□ -0.05
LIG1-213ENST00000596672 IP6K1Q92551 441 aa14.74□□□□□ -0.05
LIG1-213ENST00000596672 GGNBP2Q9H3C7 697 aa14.74□□□□□ -0.05
LIG1-213ENST00000596672 LRP5O75197 1615 aa14.74□□□□□ -0.05
LIG1-213ENST00000596672 TMF1P82094 1093 aa14.73□□□□□ -0.05
LIG1-213ENST00000596672 NLRP2Q9NX02 1062 aa14.73□□□□□ -0.05
LIG1-213ENST00000596672 TIMELESSQ9UNS1 1208 aa14.73□□□□□ -0.05
LIG1-213ENST00000596672 FAM208AQ9UK61 1670 aaKnown RBP14.73□□□□□ -0.05
LIG1-213ENST00000596672 KAT6BQ8WYB5 2073 aa14.73□□□□□ -0.05
LIG1-213ENST00000596672 BCL9O00512 1426 aa14.73□□□□□ -0.05
LIG1-213ENST00000596672 CCDC7Q96M83 1385 aa14.73□□□□□ -0.05
LIG1-213ENST00000596672 CLSPNQ9HAW4 1339 aa14.72□□□□□ -0.05
LIG1-213ENST00000596672 RRS1Q15050 365 aaKnown RBP14.72□□□□□ -0.05
LIG1-213ENST00000596672 TNS2Q63HR2 1409 aa14.72□□□□□ -0.05
LIG1-213ENST00000596672 HOXC9P31274 260 aa14.71□□□□□ -0.05
LIG1-213ENST00000596672 LTV1Q96GA3 475 aaPredicted RBP14.71□□□□□ -0.05
LIG1-213ENST00000596672 ANO8Q9HCE9 1232 aaPredicted RBP14.71□□□□□ -0.05
LIG1-213ENST00000596672 SHANK3Q9BYB0 1731 aa14.7□□□□□ -0.06
LIG1-213ENST00000596672 EXOC5O00471 708 aa14.7□□□□□ -0.06
LIG1-213ENST00000596672 COG3Q96JB2 828 aa14.7□□□□□ -0.06
LIG1-213ENST00000596672 CDCA7Q9BWT1 371 aaPredicted RBP14.7□□□□□ -0.06
LIG1-213ENST00000596672 BCL11BQ9C0K0 894 aaPredicted RBP14.7□□□□□ -0.06
LIG1-213ENST00000596672 KIF20BQ96Q89 1820 aa14.7□□□□□ -0.06
LIG1-213ENST00000596672 PARD3Q8TEW0 1356 aa14.7□□□□□ -0.06
LIG1-213ENST00000596672 C11orf95C9JLR9 678 aaPredicted RBP14.69□□□□□ -0.06
LIG1-213ENST00000596672 PDGFDQ9GZP0 370 aaPredicted RBP14.69□□□□□ -0.06
LIG1-213ENST00000596672 RGPD3A6NKT7 1758 aaPredicted RBP14.69□□□□□ -0.06
LIG1-213ENST00000596672 RGPD4Q7Z3J3 1758 aa14.69□□□□□ -0.06
LIG1-213ENST00000596672 PLSCR1O15162 318 aa14.68□□□□□ -0.06
LIG1-213ENST00000596672 HSPA5P11021 654 aaKnown RBP14.67□□□□□ -0.06
LIG1-213ENST00000596672 IL2RBP14784 551 aa14.67□□□□□ -0.06
LIG1-213ENST00000596672 NBPF6Q5VWK0 638 aa14.67□□□□□ -0.06
LIG1-213ENST00000596672 ACSBG1Q96GR2 724 aa14.67□□□□□ -0.06
LIG1-213ENST00000596672 NBPF4Q96M43 638 aa14.67□□□□□ -0.06
LIG1-213ENST00000596672 NHSQ6T4R5 1651 aa14.67□□□□□ -0.06
LIG1-213ENST00000596672 MEGF6O75095 1541 aa14.66□□□□□ -0.06
LIG1-213ENST00000596672 SLC24A1O60721 1099 aa14.66□□□□□ -0.06
LIG1-213ENST00000596672 HSP90AB2PQ58FF8 381 aa14.66□□□□□ -0.06
LIG1-213ENST00000596672 BTAF1O14981 1849 aa14.66□□□□□ -0.06
LIG1-213ENST00000596672 NSD3Q9BZ95 1437 aa14.66□□□□□ -0.06
LIG1-213ENST00000596672 USHBP1Q8N6Y0 703 aa14.65□□□□□ -0.06
LIG1-213ENST00000596672 CCER1Q8TC90 406 aaPredicted RBP14.65□□□□□ -0.06
LIG1-213ENST00000596672 AMPHP49418 695 aa14.64□□□□□ -0.07
LIG1-213ENST00000596672 EMILIN1Q9Y6C2 1016 aa14.64□□□□□ -0.07
LIG1-213ENST00000596672 CASZ1Q86V15 1759 aa14.64□□□□□ -0.07
LIG1-213ENST00000596672 TXNRD1Q16881 649 aa14.63□□□□□ -0.07
LIG1-213ENST00000596672 MAP2P11137 1827 aaKnown RBP14.63□□□□□ -0.07
LIG1-213ENST00000596672 RTL1A6NKG5 1358 aa14.61□□□□□ -0.07
LIG1-213ENST00000596672 ANKRD26Q9UPS8 1709 aa14.61□□□□□ -0.07
LIG1-213ENST00000596672 DDX54Q8TDD1 881 aaKnown RBP14.61□□□□□ -0.07
LIG1-213ENST00000596672 LRRC4BQ9NT99 713 aa14.61□□□□□ -0.07
LIG1-213ENST00000596672 PAPPAQ13219 1627 aa14.61□□□□□ -0.07
LIG1-213ENST00000596672 NSD2O96028 1365 aa14.6□□□□□ -0.07
LIG1-213ENST00000596672 CDCA8Q53HL2 280 aa14.6□□□□□ -0.07
LIG1-213ENST00000596672 INSRP06213 1382 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms