RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 BCL9O00512 1426 aa14.38□□□□□ -0.11
LIG1-209ENST00000596104 TTC21BQ7Z4L5 1316 aa14.38□□□□□ -0.11
LIG1-209ENST00000596104 PIK3C2AO00443 1686 aa14.37□□□□□ -0.11
LIG1-209ENST00000596104 MARCH10Q8NA82 808 aaPredicted RBP14.37□□□□□ -0.11
LIG1-209ENST00000596104 COL18A1P39060 1754 aa14.37□□□□□ -0.11
LIG1-209ENST00000596104 PROM2Q8N271 834 aa14.36□□□□□ -0.11
LIG1-209ENST00000596104 ZNF692Q9BU19 519 aaPredicted RBP14.36□□□□□ -0.11
LIG1-209ENST00000596104 NINLQ9Y2I6 1382 aa14.35□□□□□ -0.11
LIG1-209ENST00000596104 KCNH5Q8NCM2 988 aa14.35□□□□□ -0.11
LIG1-209ENST00000596104 CDCA7Q9BWT1 371 aaPredicted RBP14.35□□□□□ -0.11
LIG1-209ENST00000596104 CARD10Q9BWT7 1032 aa14.35□□□□□ -0.11
LIG1-209ENST00000596104 YY1P25490 414 aa14.34□□□□□ -0.11
LIG1-209ENST00000596104 PPP1R1BQ9UD71 204 aaPredicted RBP14.34□□□□□ -0.11
LIG1-209ENST00000596104 TTC21AQ8NDW8 1320 aa14.34□□□□□ -0.11
LIG1-209ENST00000596104 RGPD3A6NKT7 1758 aaPredicted RBP14.34□□□□□ -0.11
LIG1-209ENST00000596104 RGPD4Q7Z3J3 1758 aa14.34□□□□□ -0.11
LIG1-209ENST00000596104 PDGFDQ9GZP0 370 aaPredicted RBP14.33□□□□□ -0.12
LIG1-209ENST00000596104 TRPM1Q7Z4N2 1603 aa14.33□□□□□ -0.12
LIG1-209ENST00000596104 NFAT5O94916 1531 aa14.32□□□□□ -0.12
LIG1-209ENST00000596104 SOX12O15370 315 aa14.32□□□□□ -0.12
LIG1-209ENST00000596104 SIN3AQ96ST3 1273 aa14.32□□□□□ -0.12
LIG1-209ENST00000596104 ROCK2O75116 1388 aaKnown RBP14.32□□□□□ -0.12
LIG1-209ENST00000596104 CSB-PGBD3P0DP91 1061 aa14.31□□□□□ -0.12
LIG1-209ENST00000596104 CCDC7Q96M83 1385 aa14.31□□□□□ -0.12
LIG1-209ENST00000596104 TXNRD1Q16881 649 aa14.3□□□□□ -0.12
LIG1-209ENST00000596104 KTN1Q86UP2 1357 aaKnown RBP14.3□□□□□ -0.12
LIG1-209ENST00000596104 CASZ1Q86V15 1759 aa14.29□□□□□ -0.12
LIG1-209ENST00000596104 SBF2Q86WG5 1849 aa14.29□□□□□ -0.12
LIG1-209ENST00000596104 EXOC5O00471 708 aa14.29□□□□□ -0.12
LIG1-209ENST00000596104 PTGER2P43116 358 aa14.29□□□□□ -0.12
LIG1-209ENST00000596104 USP31Q70CQ4 1352 aa14.29□□□□□ -0.12
LIG1-209ENST00000596104 TNS2Q63HR2 1409 aa14.29□□□□□ -0.12
LIG1-209ENST00000596104 ABCC6O95255 1503 aa14.29□□□□□ -0.12
LIG1-209ENST00000596104 ZBTB7AO95365 584 aa14.28□□□□□ -0.12
LIG1-209ENST00000596104 WNK3Q9BYP7 1800 aa14.28□□□□□ -0.12
LIG1-209ENST00000596104 SBNO2Q9Y2G9 1366 aa14.28□□□□□ -0.12
LIG1-209ENST00000596104 ERBB3P21860 1342 aa14.27□□□□□ -0.12
LIG1-209ENST00000596104 SLC15A2Q16348 729 aa14.27□□□□□ -0.13
LIG1-209ENST00000596104 AKAP12Q02952 1782 aa14.27□□□□□ -0.13
LIG1-209ENST00000596104 CD163L1Q9NR16 1453 aa14.26□□□□□ -0.13
LIG1-209ENST00000596104 NEUROD1Q13562 356 aa14.26□□□□□ -0.13
LIG1-209ENST00000596104 STK32BQ9NY57 414 aa14.26□□□□□ -0.13
LIG1-209ENST00000596104 DCAF8L1A6NGE4 600 aa14.25□□□□□ -0.13
LIG1-209ENST00000596104 NME9Q86XW9 330 aa14.25□□□□□ -0.13
LIG1-209ENST00000596104 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.25□□□□□ -0.13
LIG1-209ENST00000596104 ATF5Q9Y2D1 282 aaPredicted RBP14.25□□□□□ -0.13
LIG1-209ENST00000596104 SGIP1Q9BQI5 828 aa14.24□□□□□ -0.13
LIG1-209ENST00000596104 ACSBG1Q96GR2 724 aa14.23□□□□□ -0.13
LIG1-209ENST00000596104 NLRP2Q9NX02 1062 aa14.23□□□□□ -0.13
LIG1-209ENST00000596104 RGPD5Q99666 1765 aa14.22□□□□□ -0.13
LIG1-209ENST00000596104 MON2Q7Z3U7 1717 aa14.22□□□□□ -0.13
LIG1-209ENST00000596104 IL2RBP14784 551 aa14.22□□□□□ -0.13
LIG1-209ENST00000596104 MTFR1LQ9H019 292 aa14.22□□□□□ -0.13
LIG1-209ENST00000596104 MYOM1P52179 1685 aa14.22□□□□□ -0.13
LIG1-209ENST00000596104 USP54Q70EL1 1684 aa14.21□□□□□ -0.13
LIG1-209ENST00000596104 ANKRD24Q8TF21 1146 aa14.21□□□□□ -0.13
LIG1-209ENST00000596104 SYT17Q9BSW7 474 aa14.21□□□□□ -0.13
LIG1-209ENST00000596104 FHDC1Q9C0D6 1143 aaPredicted RBP14.21□□□□□ -0.13
LIG1-209ENST00000596104 SLC12A5Q9H2X9 1139 aa14.21□□□□□ -0.13
LIG1-209ENST00000596104 NHSQ6T4R5 1651 aa14.2□□□□□ -0.14
LIG1-209ENST00000596104 CARD11Q9BXL7 1154 aa14.2□□□□□ -0.14
LIG1-209ENST00000596104 EDC4Q6P2E9 1401 aaKnown RBP14.2□□□□□ -0.14
LIG1-209ENST00000596104 PAPPAQ13219 1627 aa14.19□□□□□ -0.14
LIG1-209ENST00000596104 HDGFL2Q7Z4V5 671 aaPredicted RBP14.19□□□□□ -0.14
LIG1-209ENST00000596104 TMC1Q8TDI8 760 aa14.19□□□□□ -0.14
LIG1-209ENST00000596104 ZNF827Q17R98 1081 aa14.18□□□□□ -0.14
LIG1-209ENST00000596104 LRRC4BQ9NT99 713 aa14.18□□□□□ -0.14
LIG1-209ENST00000596104 A0A1W2PP64 1363 aa14.18□□□□□ -0.14
LIG1-209ENST00000596104 IP6K1Q92551 441 aa14.17□□□□□ -0.14
LIG1-209ENST00000596104 PUS7Q96PZ0 661 aaKnown RBP14.17□□□□□ -0.14
LIG1-209ENST00000596104 ZNF784Q8NCA9 323 aaPredicted RBP14.16□□□□□ -0.14
LIG1-209ENST00000596104 ARXQ96QS3 562 aa14.16□□□□□ -0.14
LIG1-209ENST00000596104 TERF2IPQ9NYB0 399 aa14.16□□□□□ -0.14
LIG1-209ENST00000596104 MAP3K5Q99683 1374 aa14.16□□□□□ -0.14
LIG1-209ENST00000596104 AKT1S1Q96B36 256 aa14.15□□□□□ -0.14
LIG1-209ENST00000596104 SLC27A3Q5K4L6 730 aa14.13□□□□□ -0.15
LIG1-209ENST00000596104 DDX54Q8TDD1 881 aaKnown RBP14.13□□□□□ -0.15
LIG1-209ENST00000596104 TESK2Q96S53 571 aa14.13□□□□□ -0.15
LIG1-209ENST00000596104 MAP3K19Q56UN5 1328 aa14.13□□□□□ -0.15
LIG1-209ENST00000596104 LTN1O94822 1766 aa14.12□□□□□ -0.15
LIG1-209ENST00000596104 LTV1Q96GA3 475 aaPredicted RBP14.12□□□□□ -0.15
LIG1-209ENST00000596104 BTAF1O14981 1849 aa14.12□□□□□ -0.15
LIG1-209ENST00000596104 HOXC9P31274 260 aa14.11□□□□□ -0.15
LIG1-209ENST00000596104 SLC16A10Q8TF71 515 aa14.11□□□□□ -0.15
LIG1-209ENST00000596104 PNPLA7Q6ZV29 1317 aa14.11□□□□□ -0.15
LIG1-209ENST00000596104 NSD2O96028 1365 aa14.1□□□□□ -0.15
LIG1-209ENST00000596104 ANKRD36BQ8N2N9 1353 aa14.1□□□□□ -0.15
LIG1-209ENST00000596104 FBLN1P23142 703 aa14.1□□□□□ -0.15
LIG1-209ENST00000596104 PRIM1P49642 420 aaKnown RBP14.1□□□□□ -0.15
LIG1-209ENST00000596104 TONSLQ96HA7 1378 aa14.09□□□□□ -0.15
LIG1-209ENST00000596104 KCNQ4P56696 695 aa14.09□□□□□ -0.15
LIG1-209ENST00000596104 COG3Q96JB2 828 aa14.09□□□□□ -0.15
LIG1-209ENST00000596104 ST20-MTHFSA0A0A6YYL1 179 aa14.08□□□□□ -0.16
LIG1-209ENST00000596104 MEGF6O75095 1541 aa14.08□□□□□ -0.16
LIG1-209ENST00000596104 UTRNP46939 3433 aa14.08□□□□□ -0.16
LIG1-209ENST00000596104 FAM208AQ9UK61 1670 aaKnown RBP14.07□□□□□ -0.16
LIG1-209ENST00000596104 AMPHP49418 695 aa14.07□□□□□ -0.16
LIG1-209ENST00000596104 ZCRB1Q8TBF4 217 aaKnown RBP14.07□□□□□ -0.16
LIG1-209ENST00000596104 SYTL4Q96C24 671 aaPredicted RBP14.07□□□□□ -0.16
LIG1-209ENST00000596104 POLD1P28340 1107 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms