RNA–Protein interactions for RNA: ENST00000593946.5

PNKP-203, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 1 (best)

Gene PNKP, Length 1,723 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-203ENST00000593946 ARHGEF10O15013 1369 aa27.49■■□□□ 1.99
PNKP-203ENST00000593946 ZNF521Q96K83 1311 aa27.49■■□□□ 1.99
PNKP-203ENST00000593946 PDE3BQ13370 1112 aa27.49■■□□□ 1.99
PNKP-203ENST00000593946 HOXC9P31274 260 aa27.48■■□□□ 1.99
PNKP-203ENST00000593946 TCP11L2Q8N4U5 519 aa27.47■■□□□ 1.99
PNKP-203ENST00000593946 RSPH6AQ9H0K4 717 aa27.47■■□□□ 1.99
PNKP-203ENST00000593946 PNNQ9H307 717 aaKnown RBP27.47■■□□□ 1.99
PNKP-203ENST00000593946 NCBP3Q53F19 620 aaKnown RBP27.44■■□□□ 1.98
PNKP-203ENST00000593946 ARHGEF25Q86VW2 580 aa27.44■■□□□ 1.98
PNKP-203ENST00000593946 IP6K1Q92551 441 aa27.43■■□□□ 1.98
PNKP-203ENST00000593946 AHDC1Q5TGY3 1603 aaPredicted RBP27.43■■□□□ 1.98
PNKP-203ENST00000593946 HMOX1P09601 288 aa27.42■■□□□ 1.98
PNKP-203ENST00000593946 MAPK8IP3Q9UPT6 1336 aa27.42■■□□□ 1.98
PNKP-203ENST00000593946 PRKAR2BP31323 418 aa27.41■■□□□ 1.98
PNKP-203ENST00000593946 ABCA3Q99758 1704 aa27.41■■□□□ 1.98
PNKP-203ENST00000593946 PHF23Q9BUL5 403 aaPredicted RBP27.41■■□□□ 1.98
PNKP-203ENST00000593946 RGPD5Q99666 1765 aa27.4■■□□□ 1.98
PNKP-203ENST00000593946 CCDC27Q2M243 656 aa27.38■■□□□ 1.97
PNKP-203ENST00000593946 RRP7AQ9Y3A4 280 aaKnown RBP27.38■■□□□ 1.97
PNKP-203ENST00000593946 PLEKHG5O94827 1062 aa27.38■■□□□ 1.97
PNKP-203ENST00000593946 CDCA7LQ96GN5 454 aa27.38■■□□□ 1.97
PNKP-203ENST00000593946 IGSF1Q8N6C5 1336 aa27.38■■□□□ 1.97
PNKP-203ENST00000593946 WWC1Q8IX03 1113 aa27.37■■□□□ 1.97
PNKP-203ENST00000593946 COL18A1P39060 1754 aa27.37■■□□□ 1.97
PNKP-203ENST00000593946 DLG5Q8TDM6 1919 aa27.37■■□□□ 1.97
PNKP-203ENST00000593946 TMPOP42166 694 aaKnown RBP27.36■■□□□ 1.97
PNKP-203ENST00000593946 KDRP35968 1356 aa27.36■■□□□ 1.97
PNKP-203ENST00000593946 ABCC6O95255 1503 aa27.36■■□□□ 1.97
PNKP-203ENST00000593946 GOLGA2Q08379 1002 aa27.36■■□□□ 1.97
PNKP-203ENST00000593946 NEUROD2Q15784 382 aa27.36■■□□□ 1.97
PNKP-203ENST00000593946 SULT6B1Q6IMI4 303 aa27.36■■□□□ 1.97
PNKP-203ENST00000593946 RGPD2P0DJD1 1756 aa27.35■■□□□ 1.97
PNKP-203ENST00000593946 AEBP1Q8IUX7 1158 aa27.35■■□□□ 1.97
PNKP-203ENST00000593946 EYA1Q99502 592 aa27.35■■□□□ 1.97
PNKP-203ENST00000593946 NEFMP07197 916 aa27.34■■□□□ 1.97
PNKP-203ENST00000593946 CABLES1Q8TDN4 633 aa27.34■■□□□ 1.97
PNKP-203ENST00000593946 PHACTR3Q96KR7 559 aa27.33■■□□□ 1.97
PNKP-203ENST00000593946 ZBTB7CA1YPR0 619 aa27.33■■□□□ 1.96
PNKP-203ENST00000593946 CPDO75976 1380 aa27.32■■□□□ 1.96
PNKP-203ENST00000593946 ZC3H6P61129 1189 aaKnown RBP27.32■■□□□ 1.96
PNKP-203ENST00000593946 CAMTA1Q9Y6Y1 1673 aa27.3■■□□□ 1.96
PNKP-203ENST00000593946 SLFN5Q08AF3 891 aa27.3■■□□□ 1.96
PNKP-203ENST00000593946 LTV1Q96GA3 475 aaPredicted RBP27.3■■□□□ 1.96
PNKP-203ENST00000593946 PHLPP1O60346 1717 aa27.29■■□□□ 1.96
PNKP-203ENST00000593946 TOM1O60784 492 aa27.29■■□□□ 1.96
PNKP-203ENST00000593946 NFE2L2Q16236 605 aa27.29■■□□□ 1.96
PNKP-203ENST00000593946 GTF3C3Q9Y5Q9 886 aa27.29■■□□□ 1.96
PNKP-203ENST00000593946 WDR63Q8IWG1 891 aa27.28■■□□□ 1.96
PNKP-203ENST00000593946 TRMT2AQ8IZ69 625 aaKnown RBP27.28■■□□□ 1.96
PNKP-203ENST00000593946 TRIM35Q9UPQ4 493 aa27.28■■□□□ 1.96
PNKP-203ENST00000593946 COL22A1Q8NFW1 1626 aaPredicted RBP27.27■■□□□ 1.96
PNKP-203ENST00000593946 RIPK4P57078 832 aa27.27■■□□□ 1.96
PNKP-203ENST00000593946 DUSP27Q5VZP5 1158 aa27.27■■□□□ 1.96
PNKP-203ENST00000593946 AXIN2Q9Y2T1 843 aa27.27■■□□□ 1.96
PNKP-203ENST00000593946 COL16A1Q07092 1604 aaPredicted RBP27.27■■□□□ 1.96
PNKP-203ENST00000593946 SPINK5Q9NQ38 1064 aaPredicted RBP27.27■■□□□ 1.96
PNKP-203ENST00000593946 KIAA0232Q92628 1395 aa27.26■■□□□ 1.96
PNKP-203ENST00000593946 E9PSI1 815 aa27.26■■□□□ 1.95
PNKP-203ENST00000593946 FAM208AQ9UK61 1670 aaKnown RBP27.26■■□□□ 1.95
PNKP-203ENST00000593946 NCAPD2Q15021 1401 aa27.25■■□□□ 1.95
PNKP-203ENST00000593946 LRRC59Q96AG4 307 aaKnown RBP27.25■■□□□ 1.95
PNKP-203ENST00000593946 LMO7Q8WWI1 1683 aa27.25■■□□□ 1.95
PNKP-203ENST00000593946 ANKRD24Q8TF21 1146 aa27.24■■□□□ 1.95
PNKP-203ENST00000593946 NBPF6Q5VWK0 638 aa27.23■■□□□ 1.95
PNKP-203ENST00000593946 NBPF4Q96M43 638 aa27.23■■□□□ 1.95
PNKP-203ENST00000593946 SUPT16HQ9Y5B9 1047 aaKnown RBP27.23■■□□□ 1.95
PNKP-203ENST00000593946 ERBB3P21860 1342 aa27.23■■□□□ 1.95
PNKP-203ENST00000593946 CHRNA2Q15822 529 aa27.19■■□□□ 1.94
PNKP-203ENST00000593946 UBAP1LF5GYI3 381 aa27.19■■□□□ 1.94
PNKP-203ENST00000593946 USHBP1Q8N6Y0 703 aa27.19■■□□□ 1.94
PNKP-203ENST00000593946 IL16Q14005 1332 aa27.18■■□□□ 1.94
PNKP-203ENST00000593946 HAP1P54257 671 aaPredicted RBP27.17■■□□□ 1.94
PNKP-203ENST00000593946 PIP4K2BP78356 416 aa27.17■■□□□ 1.94
PNKP-203ENST00000593946 LMOD3Q0VAK6 560 aa27.17■■□□□ 1.94
PNKP-203ENST00000593946 PRDM11Q9NQV5 511 aa27.16■■□□□ 1.94
PNKP-203ENST00000593946 RCAN3Q9UKA8 241 aa27.15■■□□□ 1.94
PNKP-203ENST00000593946 RNF123Q5XPI4 1314 aa27.14■■□□□ 1.94
PNKP-203ENST00000593946 CERKQ8TCT0 537 aa27.14■■□□□ 1.94
PNKP-203ENST00000593946 MTHFSDQ2M296 383 aaKnown RBP27.13■■□□□ 1.93
PNKP-203ENST00000593946 MYH16Q9H6N6 1097 aa27.13■■□□□ 1.93
PNKP-203ENST00000593946 GAS2L2Q8NHY3 880 aa27.12■■□□□ 1.93
PNKP-203ENST00000593946 CALD1Q05682 793 aaKnown RBP27.1■■□□□ 1.93
PNKP-203ENST00000593946 COL5A2P05997 1499 aaPredicted RBP27.1■■□□□ 1.93
PNKP-203ENST00000593946 COL14A1Q05707 1796 aaKnown RBP27.1■■□□□ 1.93
PNKP-203ENST00000593946 NEFLP07196 543 aa27.09■■□□□ 1.93
PNKP-203ENST00000593946 FAM83GA6ND36 823 aa27.08■■□□□ 1.93
PNKP-203ENST00000593946 THUMPD2Q9BTF0 503 aaKnown RBP27.08■■□□□ 1.93
PNKP-203ENST00000593946 FANCIQ9NVI1 1328 aa27.08■■□□□ 1.93
PNKP-203ENST00000593946 LRRC37A3O60309 1634 aa27.07■■□□□ 1.92
PNKP-203ENST00000593946 NLRP2Q9NX02 1062 aa27.07■■□□□ 1.92
PNKP-203ENST00000593946 CSB-PGBD3P0DP91 1061 aa27.06■■□□□ 1.92
PNKP-203ENST00000593946 WDR17Q8IZU2 1322 aa27.05■■□□□ 1.92
PNKP-203ENST00000593946 VIRMAQ69YN4 1812 aaKnown RBP27.05■■□□□ 1.92
PNKP-203ENST00000593946 DCTN1Q14203 1278 aa27.04■■□□□ 1.92
PNKP-203ENST00000593946 HTATSF1O43719 755 aaKnown RBP27.04■■□□□ 1.92
PNKP-203ENST00000593946 TSR2Q969E8 191 aaKnown RBP27.04■■□□□ 1.92
PNKP-203ENST00000593946 IFT57Q9NWB7 429 aa27.04■■□□□ 1.92
PNKP-203ENST00000593946 MAP3K5Q99683 1374 aa27.03■■□□□ 1.92
PNKP-203ENST00000593946 PLEKHG2Q9H7P9 1386 aa27.03■■□□□ 1.92
PNKP-203ENST00000593946 ZNF853P0CG23 659 aa27.03■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms