RNA–Protein interactions for RNA: ENST00000592244.1

LIG3-214, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 440 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-214ENST00000592244 PIK3C2AO00443 1686 aa15.31■□□□□ 0.04
LIG3-214ENST00000592244 AKAP12Q02952 1782 aa15.3■□□□□ 0.04
LIG3-214ENST00000592244 WDR17Q8IZU2 1322 aa15.3■□□□□ 0.04
LIG3-214ENST00000592244 COG3Q96JB2 828 aa15.3■□□□□ 0.04
LIG3-214ENST00000592244 CD163L1Q9NR16 1453 aa15.29■□□□□ 0.04
LIG3-214ENST00000592244 ANKRD36BQ8N2N9 1353 aa15.29■□□□□ 0.04
LIG3-214ENST00000592244 EP400Q96L91 3159 aa15.29■□□□□ 0.04
LIG3-214ENST00000592244 LMO7Q8WWI1 1683 aa15.28■□□□□ 0.04
LIG3-214ENST00000592244 MON2Q7Z3U7 1717 aa15.27■□□□□ 0.04
LIG3-214ENST00000592244 CARD10Q9BWT7 1032 aa15.27■□□□□ 0.04
LIG3-214ENST00000592244 AXIN2Q9Y2T1 843 aa15.27■□□□□ 0.04
LIG3-214ENST00000592244 ABCC6O95255 1503 aa15.27■□□□□ 0.03
LIG3-214ENST00000592244 THSD7AQ9UPZ6 1657 aa15.26■□□□□ 0.03
LIG3-214ENST00000592244 EIF4G2P78344 907 aaKnown RBP eCLIP15.26■□□□□ 0.03
LIG3-214ENST00000592244 DDB1Q16531 1140 aa15.26■□□□□ 0.03
LIG3-214ENST00000592244 CCDC7Q96M83 1385 aa15.25■□□□□ 0.03
LIG3-214ENST00000592244 BRWD3Q6RI45 1802 aa15.25■□□□□ 0.03
LIG3-214ENST00000592244 FAM182BQ5T319 152 aa15.25■□□□□ 0.03
LIG3-214ENST00000592244 DEFB132Q7Z7B7 95 aa15.25■□□□□ 0.03
LIG3-214ENST00000592244 NFAT5O94916 1531 aa15.24■□□□□ 0.03
LIG3-214ENST00000592244 NLRP2Q9NX02 1062 aa15.23■□□□□ 0.03
LIG3-214ENST00000592244 OVOS2A0A0J9YW53 1432 aa15.23■□□□□ 0.03
LIG3-214ENST00000592244 OVOS2Q6IE36 1432 aa15.23■□□□□ 0.03
LIG3-214ENST00000592244 TRIM37O94972 964 aa15.22■□□□□ 0.03
LIG3-214ENST00000592244 ERBB3P21860 1342 aa15.21■□□□□ 0.03
LIG3-214ENST00000592244 EXOC5O00471 708 aa15.21■□□□□ 0.03
LIG3-214ENST00000592244 AMPHP49418 695 aa15.21■□□□□ 0.03
LIG3-214ENST00000592244 ANKRD24Q8TF21 1146 aa15.21■□□□□ 0.03
LIG3-214ENST00000592244 IP6K1Q92551 441 aa15.21■□□□□ 0.03
LIG3-214ENST00000592244 OVOS2A0A0G2JMS6 1433 aa15.2■□□□□ 0.02
LIG3-214ENST00000592244 APBA3O96018 575 aa15.2■□□□□ 0.02
LIG3-214ENST00000592244 POLR3GLQ9BT43 218 aa15.2■□□□□ 0.02
LIG3-214ENST00000592244 PARD3Q8TEW0 1356 aa15.2■□□□□ 0.02
LIG3-214ENST00000592244 DISP2A7MBM2 1401 aa15.19■□□□□ 0.02
LIG3-214ENST00000592244 FYB1O15117 783 aa15.19■□□□□ 0.02
LIG3-214ENST00000592244 EN1Q05925 392 aaPredicted RBP15.19■□□□□ 0.02
LIG3-214ENST00000592244 USP54Q70EL1 1684 aa15.19■□□□□ 0.02
LIG3-214ENST00000592244 GGNBP2Q9H3C7 697 aa15.18■□□□□ 0.02
LIG3-214ENST00000592244 COL18A1P39060 1754 aa15.18■□□□□ 0.02
LIG3-214ENST00000592244 HSPA5P11021 654 aaKnown RBP15.17■□□□□ 0.02
LIG3-214ENST00000592244 IL2RBP14784 551 aa15.17■□□□□ 0.02
LIG3-214ENST00000592244 RGPD1P0DJD0 1748 aa15.17■□□□□ 0.02
LIG3-214ENST00000592244 CGNL1Q0VF96 1302 aa15.17■□□□□ 0.02
LIG3-214ENST00000592244 MAP3K19Q56UN5 1328 aa15.17■□□□□ 0.02
LIG3-214ENST00000592244 RTL1A6NKG5 1358 aa15.16■□□□□ 0.02
LIG3-214ENST00000592244 PARP4Q9UKK3 1724 aaKnown RBP15.15■□□□□ 0.02
LIG3-214ENST00000592244 HOXC9P31274 260 aa15.15■□□□□ 0.02
LIG3-214ENST00000592244 LTV1Q96GA3 475 aaPredicted RBP15.15■□□□□ 0.02
LIG3-214ENST00000592244 SMG6Q86US8 1419 aaKnown RBP15.15■□□□□ 0.02
LIG3-214ENST00000592244 NSD3Q9BZ95 1437 aa15.15■□□□□ 0.02
LIG3-214ENST00000592244 EZH2Q15910 746 aaKnown RBP15.14■□□□□ 0.01
LIG3-214ENST00000592244 NBPF14Q5TI25 921 aa15.14■□□□□ 0.01
LIG3-214ENST00000592244 BCL11BQ9C0K0 894 aaPredicted RBP15.14■□□□□ 0.01
LIG3-214ENST00000592244 KIF24Q5T7B8 1368 aa15.13■□□□□ 0.01
LIG3-214ENST00000592244 BCL9O00512 1426 aa15.13■□□□□ 0.01
LIG3-214ENST00000592244 MARCH10Q8NA82 808 aaPredicted RBP15.13■□□□□ 0.01
LIG3-214ENST00000592244 CAMKK2Q96RR4 588 aa15.13■□□□□ 0.01
LIG3-214ENST00000592244 TNS2Q63HR2 1409 aa15.12■□□□□ 0.01
LIG3-214ENST00000592244 RRS1Q15050 365 aaKnown RBP15.12■□□□□ 0.01
LIG3-214ENST00000592244 CARD14Q9BXL6 1004 aa15.12■□□□□ 0.01
LIG3-214ENST00000592244 PLSCR1O15162 318 aa15.11■□□□□ 0.01
LIG3-214ENST00000592244 LRRC37A3O60309 1634 aa15.1■□□□□ 0.01
LIG3-214ENST00000592244 FLT4P35916 1363 aa15.1■□□□□ 0.01
LIG3-214ENST00000592244 LTN1O94822 1766 aa15.09■□□□□ 0.01
LIG3-214ENST00000592244 RAPGEF4Q8WZA2 1011 aa15.09■□□□□ 0.01
LIG3-214ENST00000592244 PSDA5PKW4 1024 aaPredicted RBP15.08■□□□□ 0
LIG3-214ENST00000592244 FBLN1P23142 703 aa15.08■□□□□ 0
LIG3-214ENST00000592244 INSRP06213 1382 aa15.08■□□□□ 0
LIG3-214ENST00000592244 RGPD5Q99666 1765 aa15.07■□□□□ 0
LIG3-214ENST00000592244 PPM1GO15355 546 aaPredicted RBP15.07■□□□□ 0
LIG3-214ENST00000592244 R3HDM1Q15032 1099 aaKnown RBP15.07■□□□□ 0
LIG3-214ENST00000592244 PANK3Q9H999 370 aa15.07■□□□□ 0
LIG3-214ENST00000592244 TNS1Q9HBL0 1735 aaKnown RBP15.06■□□□□ 0
LIG3-214ENST00000592244 DDX54Q8TDD1 881 aaKnown RBP15.06■□□□□ 0
LIG3-214ENST00000592244 KNSTRNQ9Y448 316 aa15.06■□□□□ 0
LIG3-214ENST00000592244 NSD2O96028 1365 aa15.06■□□□□ 0
LIG3-214ENST00000592244 FAM208AQ9UK61 1670 aaKnown RBP15.06■□□□□ 0
LIG3-214ENST00000592244 TATP17735 454 aaPredicted RBP15.05■□□□□ -0
LIG3-214ENST00000592244 HSP90AB2PQ58FF8 381 aa15.05■□□□□ -0
LIG3-214ENST00000592244 ZCRB1Q8TBF4 217 aaKnown RBP15.05■□□□□ -0
LIG3-214ENST00000592244 NBPF6Q5VWK0 638 aa15.04■□□□□ -0
LIG3-214ENST00000592244 NBPF4Q96M43 638 aa15.04■□□□□ -0
LIG3-214ENST00000592244 WNK3Q9BYP7 1800 aa15.03■□□□□ -0
LIG3-214ENST00000592244 PEAK1Q9H792 1746 aa15.03■□□□□ -0
LIG3-214ENST00000592244 MYOM1P52179 1685 aa15.03■□□□□ -0
LIG3-214ENST00000592244 ACSBG1Q96GR2 724 aa15.03■□□□□ -0
LIG3-214ENST00000592244 EMILIN1Q9Y6C2 1016 aa15.03■□□□□ -0
LIG3-214ENST00000592244 KIF20BQ96Q89 1820 aa15.03■□□□□ -0
LIG3-214ENST00000592244 WASHC2AQ641Q2 1341 aa15.02■□□□□ -0
LIG3-214ENST00000592244 MORC1Q86VD1 984 aa15.02■□□□□ -0
LIG3-214ENST00000592244 TNNT2P45379 298 aaPredicted RBP15.01□□□□□ -0.01
LIG3-214ENST00000592244 SRCAPQ6ZRS2 3230 aa15.01□□□□□ -0.01
LIG3-214ENST00000592244 KCNQ2O43526 872 aa15□□□□□ -0.01
LIG3-214ENST00000592244 HMGB2P26583 209 aaKnown RBP15□□□□□ -0.01
LIG3-214ENST00000592244 TXNRD1Q16881 649 aa15□□□□□ -0.01
LIG3-214ENST00000592244 USHBP1Q8N6Y0 703 aa15□□□□□ -0.01
LIG3-214ENST00000592244 STK32BQ9NY57 414 aa15□□□□□ -0.01
LIG3-214ENST00000592244 POLKQ9UBT6 870 aa15□□□□□ -0.01
LIG3-214ENST00000592244 PCDH11XQ9BZA7 1347 aa14.99□□□□□ -0.01
LIG3-214ENST00000592244 PCDH11YQ9BZA8 1340 aa14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms