RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 PLCH1Q4KWH8 1693 aa14.13□□□□□ -0.15
VPS4B-204ENST00000589604 RGS17Q9UGC6 210 aaPredicted RBP14.13□□□□□ -0.15
VPS4B-204ENST00000589604 LMO7Q8WWI1 1683 aa14.13□□□□□ -0.15
VPS4B-204ENST00000589604 CPDO75976 1380 aa14.12□□□□□ -0.15
VPS4B-204ENST00000589604 NSD2O96028 1365 aa14.12□□□□□ -0.15
VPS4B-204ENST00000589604 ARHGEF25Q86VW2 580 aa14.12□□□□□ -0.15
VPS4B-204ENST00000589604 PNISRQ8TF01 805 aaKnown RBP14.12□□□□□ -0.15
VPS4B-204ENST00000589604 LTN1O94822 1766 aa14.12□□□□□ -0.15
VPS4B-204ENST00000589604 MEX3CQ5U5Q3 659 aaKnown RBP14.11□□□□□ -0.15
VPS4B-204ENST00000589604 COL14A1Q05707 1796 aaKnown RBP14.11□□□□□ -0.15
VPS4B-204ENST00000589604 PEAK1Q9H792 1746 aa14.11□□□□□ -0.15
VPS4B-204ENST00000589604 SLIT2O94813 1529 aa14.11□□□□□ -0.15
VPS4B-204ENST00000589604 CAMTA1Q9Y6Y1 1673 aa14.11□□□□□ -0.15
VPS4B-204ENST00000589604 RGPD5Q99666 1765 aa14.1□□□□□ -0.15
VPS4B-204ENST00000589604 BCL9LQ86UU0 1499 aa14.1□□□□□ -0.15
VPS4B-204ENST00000589604 AFF2P51816 1311 aa14.1□□□□□ -0.15
VPS4B-204ENST00000589604 NRAPQ86VF7 1730 aa14.1□□□□□ -0.15
VPS4B-204ENST00000589604 ZBTB7CA1YPR0 619 aa14.1□□□□□ -0.15
VPS4B-204ENST00000589604 TNNT2P45379 298 aaPredicted RBP14.1□□□□□ -0.15
VPS4B-204ENST00000589604 RRS1Q15050 365 aaKnown RBP14.1□□□□□ -0.15
VPS4B-204ENST00000589604 PRDM11Q9NQV5 511 aa14.1□□□□□ -0.15
VPS4B-204ENST00000589604 AXIN2Q9Y2T1 843 aa14.1□□□□□ -0.15
VPS4B-204ENST00000589604 MAP3K19Q56UN5 1328 aa14.09□□□□□ -0.15
VPS4B-204ENST00000589604 FNBP4Q8N3X1 1017 aaPredicted RBP14.09□□□□□ -0.15
VPS4B-204ENST00000589604 KCNH5Q8NCM2 988 aa14.09□□□□□ -0.15
VPS4B-204ENST00000589604 NGLY1Q96IV0 654 aa14.09□□□□□ -0.15
VPS4B-204ENST00000589604 MORC1Q86VD1 984 aa14.08□□□□□ -0.16
VPS4B-204ENST00000589604 BTG4Q9NY30 223 aa14.07□□□□□ -0.16
VPS4B-204ENST00000589604 EMILIN1Q9Y6C2 1016 aa14.07□□□□□ -0.16
VPS4B-204ENST00000589604 AATKQ6ZMQ8 1374 aa14.07□□□□□ -0.16
VPS4B-204ENST00000589604 MAP2P11137 1827 aaKnown RBP14.07□□□□□ -0.16
VPS4B-204ENST00000589604 NWD2Q9ULI1 1742 aa14.07□□□□□ -0.16
VPS4B-204ENST00000589604 FAM9BQ8IZU0 186 aa14.07□□□□□ -0.16
VPS4B-204ENST00000589604 DAXXQ9UER7 740 aaPredicted RBP14.07□□□□□ -0.16
VPS4B-204ENST00000589604 POLKQ9UBT6 870 aa14.06□□□□□ -0.16
VPS4B-204ENST00000589604 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.05□□□□□ -0.16
VPS4B-204ENST00000589604 POTEAQ6S8J7 498 aa14.05□□□□□ -0.16
VPS4B-204ENST00000589604 USP21Q9UK80 565 aa14.05□□□□□ -0.16
VPS4B-204ENST00000589604 COL5A2P05997 1499 aaPredicted RBP14.05□□□□□ -0.16
VPS4B-204ENST00000589604 UNC5CLQ8IV45 518 aa14.04□□□□□ -0.16
VPS4B-204ENST00000589604 ABCC6O95255 1503 aa14.03□□□□□ -0.16
VPS4B-204ENST00000589604 ATRNO75882 1429 aa14.03□□□□□ -0.16
VPS4B-204ENST00000589604 SMG6Q86US8 1419 aaKnown RBP14.03□□□□□ -0.16
VPS4B-204ENST00000589604 HOXC9P31274 260 aa14.03□□□□□ -0.16
VPS4B-204ENST00000589604 IP6K1Q92551 441 aa14.03□□□□□ -0.16
VPS4B-204ENST00000589604 HSP90AB2PQ58FF8 381 aa14.02□□□□□ -0.16
VPS4B-204ENST00000589604 LARP1Q6PKG0 1096 aaKnown RBP14.01□□□□□ -0.17
VPS4B-204ENST00000589604 STRN4Q9NRL3 753 aa14.01□□□□□ -0.17
VPS4B-204ENST00000589604 GLI3P10071 1580 aa14.01□□□□□ -0.17
VPS4B-204ENST00000589604 RGPD2P0DJD1 1756 aa14.01□□□□□ -0.17
VPS4B-204ENST00000589604 PPM1GO15355 546 aaPredicted RBP14.01□□□□□ -0.17
VPS4B-204ENST00000589604 AMPHP49418 695 aa14.01□□□□□ -0.17
VPS4B-204ENST00000589604 MTHFSP49914 203 aa14.01□□□□□ -0.17
VPS4B-204ENST00000589604 QTRT2Q9H974 415 aaKnown RBP14.01□□□□□ -0.17
VPS4B-204ENST00000589604 RTL1A6NKG5 1358 aa14□□□□□ -0.17
VPS4B-204ENST00000589604 INSRP06213 1382 aa14□□□□□ -0.17
VPS4B-204ENST00000589604 FLT4P35916 1363 aa14□□□□□ -0.17
VPS4B-204ENST00000589604 BLMP54132 1417 aaPredicted RBP14□□□□□ -0.17
VPS4B-204ENST00000589604 CENPBP07199 599 aaPredicted RBP13.99□□□□□ -0.17
VPS4B-204ENST00000589604 VPS72Q15906 364 aa13.99□□□□□ -0.17
VPS4B-204ENST00000589604 ZNF772Q68DY9 489 aaPredicted RBP13.99□□□□□ -0.17
VPS4B-204ENST00000589604 ANKRD24Q8TF21 1146 aa13.99□□□□□ -0.17
VPS4B-204ENST00000589604 LTV1Q96GA3 475 aaPredicted RBP13.99□□□□□ -0.17
VPS4B-204ENST00000589604 ERBB3P21860 1342 aa13.99□□□□□ -0.17
VPS4B-204ENST00000589604 COL3A1P02461 1466 aaPredicted RBP13.99□□□□□ -0.17
VPS4B-204ENST00000589604 HNRNPUQ00839 825 aaKnown RBP eCLIP13.98□□□□□ -0.17
VPS4B-204ENST00000589604 KIF24Q5T7B8 1368 aa13.98□□□□□ -0.17
VPS4B-204ENST00000589604 ATXN8OSP0DMR3 200 aa13.98□□□□□ -0.17
VPS4B-204ENST00000589604 SPATA31A5Q5VU36 1347 aa13.98□□□□□ -0.17
VPS4B-204ENST00000589604 SPATA31A7Q8IWB4 1347 aa13.98□□□□□ -0.17
VPS4B-204ENST00000589604 WDR17Q8IZU2 1322 aa13.98□□□□□ -0.17
VPS4B-204ENST00000589604 CDK12Q9NYV4 1490 aaPredicted RBP13.98□□□□□ -0.17
VPS4B-204ENST00000589604 ADAMTS8Q9UP79 889 aa13.98□□□□□ -0.17
VPS4B-204ENST00000589604 SPATA31A1Q5TZJ5 1347 aa13.97□□□□□ -0.17
VPS4B-204ENST00000589604 EVA1CP58658 441 aa13.97□□□□□ -0.17
VPS4B-204ENST00000589604 TRPC5Q9UL62 973 aaPredicted RBP13.97□□□□□ -0.17
VPS4B-204ENST00000589604 CRB1P82279 1406 aa13.96□□□□□ -0.17
VPS4B-204ENST00000589604 GJD4Q96KN9 370 aaPredicted RBP13.96□□□□□ -0.17
VPS4B-204ENST00000589604 FAM208AQ9UK61 1670 aaKnown RBP13.96□□□□□ -0.17
VPS4B-204ENST00000589604 EIF4A2Q14240 407 aaKnown RBP13.95□□□□□ -0.18
VPS4B-204ENST00000589604 USP35Q9P2H5 1018 aa13.95□□□□□ -0.18
VPS4B-204ENST00000589604 NBPF6Q5VWK0 638 aa13.95□□□□□ -0.18
VPS4B-204ENST00000589604 NBPF4Q96M43 638 aa13.95□□□□□ -0.18
VPS4B-204ENST00000589604 CCDC9Q9Y3X0 531 aaKnown RBP13.95□□□□□ -0.18
VPS4B-204ENST00000589604 CSB-PGBD3P0DP91 1061 aa13.94□□□□□ -0.18
VPS4B-204ENST00000589604 TPRNQ4KMQ1 711 aa13.94□□□□□ -0.18
VPS4B-204ENST00000589604 TOM1L2Q6ZVM7 507 aa13.94□□□□□ -0.18
VPS4B-204ENST00000589604 VSIG10Q8N0Z9 540 aa13.94□□□□□ -0.18
VPS4B-204ENST00000589604 USHBP1Q8N6Y0 703 aa13.94□□□□□ -0.18
VPS4B-204ENST00000589604 ZBED9Q6R2W3 1325 aa13.93□□□□□ -0.18
VPS4B-204ENST00000589604 RGPD1P0DJD0 1748 aa13.93□□□□□ -0.18
VPS4B-204ENST00000589604 RBM6P78332 1123 aaKnown RBP13.93□□□□□ -0.18
VPS4B-204ENST00000589604 CARD10Q9BWT7 1032 aa13.93□□□□□ -0.18
VPS4B-204ENST00000589604 NLRP2Q9NX02 1062 aa13.93□□□□□ -0.18
VPS4B-204ENST00000589604 WNK3Q9BYP7 1800 aa13.93□□□□□ -0.18
VPS4B-204ENST00000589604 THSD7AQ9UPZ6 1657 aa13.92□□□□□ -0.18
VPS4B-204ENST00000589604 RXRBP28702 533 aa13.92□□□□□ -0.18
VPS4B-204ENST00000589604 IL13P35225 146 aa13.92□□□□□ -0.18
VPS4B-204ENST00000589604 FAM98CQ17RN3 349 aaKnown RBP13.92□□□□□ -0.18
VPS4B-204ENST00000589604 EYA1Q99502 592 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms