RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 CEP170BQ9Y4F5 1589 aaPredicted RBP7.54□□□□□ -1.2
LIG3-210ENST00000588109 RPGRIP1LQ68CZ1 1315 aa7.54□□□□□ -1.2
LIG3-210ENST00000588109 KDM5AP29375 1690 aaKnown RBP7.54□□□□□ -1.2
LIG3-210ENST00000588109 UHRF1BP1Q6BDS2 1440 aa7.54□□□□□ -1.2
LIG3-210ENST00000588109 TRIM6-TRIM34B2RNG4 842 aa7.54□□□□□ -1.2
LIG3-210ENST00000588109 HDGFP51858 240 aaKnown RBP7.54□□□□□ -1.2
LIG3-210ENST00000588109 PTGDRQ13258 359 aa7.54□□□□□ -1.2
LIG3-210ENST00000588109 HIC1Q14526 733 aa7.54□□□□□ -1.2
LIG3-210ENST00000588109 KIAA1468Q9P260 1216 aa7.54□□□□□ -1.2
LIG3-210ENST00000588109 RABGEF1Q9UJ41 708 aa7.54□□□□□ -1.2
LIG3-210ENST00000588109 IFT172Q9UG01 1749 aa7.53□□□□□ -1.2
LIG3-210ENST00000588109 NUTM2DQ5VT03 806 aaPredicted RBP7.53□□□□□ -1.2
LIG3-210ENST00000588109 THEMISQ8N1K5 641 aaPredicted RBP7.53□□□□□ -1.2
LIG3-210ENST00000588109 MRPL50Q8N5N7 158 aaKnown RBP7.53□□□□□ -1.2
LIG3-210ENST00000588109 NPDC1Q9NQX5 325 aaPredicted RBP7.53□□□□□ -1.2
LIG3-210ENST00000588109 MYOM2P54296 1465 aa7.53□□□□□ -1.2
LIG3-210ENST00000588109 ZNF142P52746 1687 aaPredicted RBP7.53□□□□□ -1.2
LIG3-210ENST00000588109 PPLO60437 1756 aa7.53□□□□□ -1.2
LIG3-210ENST00000588109 SETD1BQ9UPS6 1966 aaKnown RBP7.53□□□□□ -1.2
LIG3-210ENST00000588109 RIMS2Q9UQ26 1411 aa7.52□□□□□ -1.2
LIG3-210ENST00000588109 NEXMIFQ5QGS0 1516 aa7.52□□□□□ -1.2
LIG3-210ENST00000588109 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.52□□□□□ -1.21
LIG3-210ENST00000588109 RBM27Q9P2N5 1060 aaKnown RBP7.52□□□□□ -1.21
LIG3-210ENST00000588109 EID1Q9Y6B2 187 aa7.52□□□□□ -1.21
LIG3-210ENST00000588109 PRAG1Q86YV5 1406 aa7.52□□□□□ -1.21
LIG3-210ENST00000588109 TMEM2Q9UHN6 1383 aa7.51□□□□□ -1.21
LIG3-210ENST00000588109 NBPF26B4DH59 902 aa7.51□□□□□ -1.21
LIG3-210ENST00000588109 GNPATO15228 680 aa7.51□□□□□ -1.21
LIG3-210ENST00000588109 NBPF8Q3BBV2 869 aa7.51□□□□□ -1.21
LIG3-210ENST00000588109 PADI6Q6TGC4 694 aa7.51□□□□□ -1.21
LIG3-210ENST00000588109 ADGRF5Q8IZF2 1346 aa7.51□□□□□ -1.21
LIG3-210ENST00000588109 TXNDC2Q86VQ3 553 aa7.5□□□□□ -1.21
LIG3-210ENST00000588109 SPNS2Q8IVW8 549 aa7.5□□□□□ -1.21
LIG3-210ENST00000588109 KRI1Q8N9T8 703 aaKnown RBP7.5□□□□□ -1.21
LIG3-210ENST00000588109 TSKSQ9UJT2 592 aa7.5□□□□□ -1.21
LIG3-210ENST00000588109 ZFYVE9O95405 1425 aa7.5□□□□□ -1.21
LIG3-210ENST00000588109 ROCK2O75116 1388 aaKnown RBP7.49□□□□□ -1.21
LIG3-210ENST00000588109 SLIT1O75093 1534 aa7.49□□□□□ -1.21
LIG3-210ENST00000588109 TATDN2Q93075 761 aa7.49□□□□□ -1.21
LIG3-210ENST00000588109 PNMA3Q9UL41 463 aa7.49□□□□□ -1.21
LIG3-210ENST00000588109 PIK3C2GO75747 1445 aa7.49□□□□□ -1.21
LIG3-210ENST00000588109 RALGAPBQ86X10 1494 aa7.49□□□□□ -1.21
LIG3-210ENST00000588109 ARHGAP23Q9P227 1491 aa7.49□□□□□ -1.21
LIG3-210ENST00000588109 NRXN1Q9ULB1 1477 aa7.49□□□□□ -1.21
LIG3-210ENST00000588109 TRPM1Q7Z4N2 1603 aa7.49□□□□□ -1.21
LIG3-210ENST00000588109 HRO43593 1189 aa7.48□□□□□ -1.21
LIG3-210ENST00000588109 NUDT18Q6ZVK8 323 aa7.48□□□□□ -1.21
LIG3-210ENST00000588109 LAPTM4BQ86VI4 370 aa7.48□□□□□ -1.21
LIG3-210ENST00000588109 ANKLE2Q86XL3 938 aa7.48□□□□□ -1.21
LIG3-210ENST00000588109 RBM46Q8TBY0 533 aaKnown RBP7.48□□□□□ -1.21
LIG3-210ENST00000588109 CARD11Q9BXL7 1154 aa7.48□□□□□ -1.21
LIG3-210ENST00000588109 LAMC1P11047 1609 aa7.48□□□□□ -1.21
LIG3-210ENST00000588109 SCAF11Q99590 1463 aaKnown RBP7.48□□□□□ -1.21
LIG3-210ENST00000588109 KIAA1210Q9ULL0 1709 aa7.47□□□□□ -1.21
LIG3-210ENST00000588109 BHMG1C9JSJ3 638 aaPredicted RBP7.47□□□□□ -1.21
LIG3-210ENST00000588109 OATP04181 439 aa7.47□□□□□ -1.21
LIG3-210ENST00000588109 LTKP29376 864 aa7.47□□□□□ -1.21
LIG3-210ENST00000588109 CFAP70Q5T0N1 1121 aa7.47□□□□□ -1.21
LIG3-210ENST00000588109 SEPT9Q9UHD8 586 aaPredicted RBP7.47□□□□□ -1.21
LIG3-210ENST00000588109 LMTK3Q96Q04 1460 aa7.47□□□□□ -1.21
LIG3-210ENST00000588109 PLEKHG1Q9ULL1 1385 aa7.46□□□□□ -1.21
LIG3-210ENST00000588109 HSPA2P54652 639 aa7.46□□□□□ -1.22
LIG3-210ENST00000588109 FAM98CQ17RN3 349 aaKnown RBP7.46□□□□□ -1.22
LIG3-210ENST00000588109 NBPF1Q3BBV0 1214 aa7.46□□□□□ -1.22
LIG3-210ENST00000588109 ZC3H15Q8WU90 426 aaKnown RBP7.46□□□□□ -1.22
LIG3-210ENST00000588109 C14orf93Q9H972 538 aaKnown RBP7.46□□□□□ -1.22
LIG3-210ENST00000588109 PLSCR2Q9NRY7 297 aa7.46□□□□□ -1.22
LIG3-210ENST00000588109 IQGAP1P46940 1657 aa7.46□□□□□ -1.22
LIG3-210ENST00000588109 POLR1AO95602 1720 aaPredicted RBP7.46□□□□□ -1.22
LIG3-210ENST00000588109 SETBP1Q9Y6X0 1596 aa7.46□□□□□ -1.22
LIG3-210ENST00000588109 SMAPO00193 183 aa7.45□□□□□ -1.22
LIG3-210ENST00000588109 SLC4A3P48751 1232 aa7.45□□□□□ -1.22
LIG3-210ENST00000588109 EIF4G2P78344 907 aaKnown RBP eCLIP7.45□□□□□ -1.22
LIG3-210ENST00000588109 TMEM132EQ6IEE7 984 aa7.45□□□□□ -1.22
LIG3-210ENST00000588109 TTC13Q8NBP0 860 aa7.45□□□□□ -1.22
LIG3-210ENST00000588109 WNT2BQ93097 391 aa7.45□□□□□ -1.22
LIG3-210ENST00000588109 SLC26A8Q96RN1 970 aa7.45□□□□□ -1.22
LIG3-210ENST00000588109 FAM198AQ9UFP1 575 aa7.45□□□□□ -1.22
LIG3-210ENST00000588109 USP47Q96K76 1375 aa7.45□□□□□ -1.22
LIG3-210ENST00000588109 ALKQ9UM73 1620 aa7.45□□□□□ -1.22
LIG3-210ENST00000588109 FECHP22830 423 aa7.44□□□□□ -1.22
LIG3-210ENST00000588109 ANKK1Q8NFD2 765 aa7.44□□□□□ -1.22
LIG3-210ENST00000588109 KCTD12Q96CX2 325 aaKnown RBP7.44□□□□□ -1.22
LIG3-210ENST00000588109 STK26Q9P289 416 aa7.44□□□□□ -1.22
LIG3-210ENST00000588109 MINK1Q8N4C8 1332 aaPredicted RBP7.44□□□□□ -1.22
LIG3-210ENST00000588109 NRXN3Q9Y4C0 1643 aa7.44□□□□□ -1.22
LIG3-210ENST00000588109 EIF3AQ14152 1382 aaKnown RBP7.44□□□□□ -1.22
LIG3-210ENST00000588109 GPRASP1Q5JY77 1395 aa7.44□□□□□ -1.22
LIG3-210ENST00000588109 NPHP4O75161 1426 aaPredicted RBP7.44□□□□□ -1.22
LIG3-210ENST00000588109 DIP2AQ14689 1571 aa7.43□□□□□ -1.22
LIG3-210ENST00000588109 GPR37O15354 613 aa7.43□□□□□ -1.22
LIG3-210ENST00000588109 RNF166Q96A37 237 aaPredicted RBP7.43□□□□□ -1.22
LIG3-210ENST00000588109 ZFRQ96KR1 1074 aaKnown RBP7.43□□□□□ -1.22
LIG3-210ENST00000588109 ADGRG1Q9Y653 693 aa7.43□□□□□ -1.22
LIG3-210ENST00000588109 ADAMTS13Q76LX8 1427 aa7.43□□□□□ -1.22
LIG3-210ENST00000588109 ADGRB1O14514 1584 aa7.42□□□□□ -1.22
LIG3-210ENST00000588109 SETD1AO15047 1707 aaKnown RBP7.42□□□□□ -1.22
LIG3-210ENST00000588109 HSPA5P11021 654 aaKnown RBP7.42□□□□□ -1.22
LIG3-210ENST00000588109 MAP2K5Q13163 448 aa7.42□□□□□ -1.22
LIG3-210ENST00000588109 MMRN1Q13201 1228 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms