RNA–Protein interactions for RNA: ENST00000585466.1

CLIP3-202, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 2

Gene CLIP3, Length 368 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-202ENST00000585466 BLMP54132 1417 aaPredicted RBP21.31■■□□□ 1
CLIP3-202ENST00000585466 CRB1P82279 1406 aa21.31■■□□□ 1
CLIP3-202ENST00000585466 PARP4Q9UKK3 1724 aaKnown RBP21.31■■□□□ 1
CLIP3-202ENST00000585466 EVA1CP58658 441 aa21.29■■□□□ 1
CLIP3-202ENST00000585466 ZBTB7CA1YPR0 619 aa21.28■■□□□ 1
CLIP3-202ENST00000585466 SOX12O15370 315 aa21.28■■□□□ 1
CLIP3-202ENST00000585466 CCDC125Q86Z20 511 aa21.28■■□□□ 1
CLIP3-202ENST00000585466 TCP11L2Q8N4U5 519 aa21.28■■□□□ 1
CLIP3-202ENST00000585466 USP35Q9P2H5 1018 aa21.28■■□□□ 1
CLIP3-202ENST00000585466 A0A0G2JS52 829 aa21.27■■□□□ 1
CLIP3-202ENST00000585466 MYT1Q01538 1121 aa21.27■■□□□ 1
CLIP3-202ENST00000585466 TNS1Q9HBL0 1735 aaKnown RBP21.26■□□□□ 0.99
CLIP3-202ENST00000585466 LRRC37A3O60309 1634 aa21.26■□□□□ 0.99
CLIP3-202ENST00000585466 FAM182BQ5T319 152 aa21.26■□□□□ 0.99
CLIP3-202ENST00000585466 WDR17Q8IZU2 1322 aa21.26■□□□□ 0.99
CLIP3-202ENST00000585466 RGPD1P0DJD0 1748 aa21.25■□□□□ 0.99
CLIP3-202ENST00000585466 THRAP3Q9Y2W1 955 aaKnown RBP21.25■□□□□ 0.99
CLIP3-202ENST00000585466 PEAK1Q9H792 1746 aa21.24■□□□□ 0.99
CLIP3-202ENST00000585466 KIF20BQ96Q89 1820 aa21.23■□□□□ 0.99
CLIP3-202ENST00000585466 DISP2A7MBM2 1401 aa21.22■□□□□ 0.99
CLIP3-202ENST00000585466 CDCA8Q53HL2 280 aa21.21■□□□□ 0.99
CLIP3-202ENST00000585466 DEFB132Q7Z7B7 95 aa21.21■□□□□ 0.99
CLIP3-202ENST00000585466 HSPA5P11021 654 aaKnown RBP21.2■□□□□ 0.98
CLIP3-202ENST00000585466 CARD14Q9BXL6 1004 aa21.2■□□□□ 0.98
CLIP3-202ENST00000585466 FYB1O15117 783 aa21.19■□□□□ 0.98
CLIP3-202ENST00000585466 TOM1L2Q6ZVM7 507 aa21.19■□□□□ 0.98
CLIP3-202ENST00000585466 ERBB3P21860 1342 aa21.19■□□□□ 0.98
CLIP3-202ENST00000585466 CARD10Q9BWT7 1032 aa21.18■□□□□ 0.98
CLIP3-202ENST00000585466 FBLN1P23142 703 aa21.17■□□□□ 0.98
CLIP3-202ENST00000585466 EIF4G2P78344 907 aaKnown RBP eCLIP21.17■□□□□ 0.98
CLIP3-202ENST00000585466 SBF2Q86WG5 1849 aa21.16■□□□□ 0.98
CLIP3-202ENST00000585466 NSD3Q9BZ95 1437 aa21.15■□□□□ 0.98
CLIP3-202ENST00000585466 MAP3K19Q56UN5 1328 aa21.15■□□□□ 0.98
CLIP3-202ENST00000585466 FAM196AQ6ZSG2 479 aa21.15■□□□□ 0.98
CLIP3-202ENST00000585466 COG3Q96JB2 828 aa21.15■□□□□ 0.98
CLIP3-202ENST00000585466 GGNBP2Q9H3C7 697 aa21.14■□□□□ 0.97
CLIP3-202ENST00000585466 FAM208AQ9UK61 1670 aaKnown RBP21.14■□□□□ 0.97
CLIP3-202ENST00000585466 CCDC7Q96M83 1385 aa21.13■□□□□ 0.97
CLIP3-202ENST00000585466 IP6K1Q92551 441 aa21.13■□□□□ 0.97
CLIP3-202ENST00000585466 C11orf95C9JLR9 678 aaPredicted RBP21.12■□□□□ 0.97
CLIP3-202ENST00000585466 PDE3BQ13370 1112 aa21.12■□□□□ 0.97
CLIP3-202ENST00000585466 ANKRD24Q8TF21 1146 aa21.12■□□□□ 0.97
CLIP3-202ENST00000585466 RGPD2P0DJD1 1756 aa21.12■□□□□ 0.97
CLIP3-202ENST00000585466 CSB-PGBD3P0DP91 1061 aa21.11■□□□□ 0.97
CLIP3-202ENST00000585466 ANKRD26Q9UPS8 1709 aa21.1■□□□□ 0.97
CLIP3-202ENST00000585466 TRIM37O94972 964 aa21.1■□□□□ 0.97
CLIP3-202ENST00000585466 SF3B2Q13435 895 aaKnown RBP21.1■□□□□ 0.97
CLIP3-202ENST00000585466 CDCA7Q9BWT1 371 aaPredicted RBP21.1■□□□□ 0.97
CLIP3-202ENST00000585466 OVOS2A0A0G2JMS6 1433 aa21.1■□□□□ 0.97
CLIP3-202ENST00000585466 BCL9O00512 1426 aa21.1■□□□□ 0.97
CLIP3-202ENST00000585466 TNS2Q63HR2 1409 aa21.1■□□□□ 0.97
CLIP3-202ENST00000585466 RTL1A6NKG5 1358 aa21.1■□□□□ 0.97
CLIP3-202ENST00000585466 HOXC9P31274 260 aa21.09■□□□□ 0.97
CLIP3-202ENST00000585466 DDB1Q16531 1140 aa21.09■□□□□ 0.97
CLIP3-202ENST00000585466 MARCH10Q8NA82 808 aaPredicted RBP21.09■□□□□ 0.97
CLIP3-202ENST00000585466 RREB1Q92766 1687 aa21.09■□□□□ 0.97
CLIP3-202ENST00000585466 BAG6P46379 1132 aa21.08■□□□□ 0.97
CLIP3-202ENST00000585466 RRS1Q15050 365 aaKnown RBP21.08■□□□□ 0.97
CLIP3-202ENST00000585466 EN1Q05925 392 aaPredicted RBP21.07■□□□□ 0.96
CLIP3-202ENST00000585466 CAMKK2Q96RR4 588 aa21.06■□□□□ 0.96
CLIP3-202ENST00000585466 NLRP2Q9NX02 1062 aa21.06■□□□□ 0.96
CLIP3-202ENST00000585466 NUP188Q5SRE5 1749 aa21.04■□□□□ 0.96
CLIP3-202ENST00000585466 RGPD3A6NKT7 1758 aaPredicted RBP21.04■□□□□ 0.96
CLIP3-202ENST00000585466 RGPD4Q7Z3J3 1758 aa21.04■□□□□ 0.96
CLIP3-202ENST00000585466 SHANK3Q9BYB0 1731 aa21.04■□□□□ 0.96
CLIP3-202ENST00000585466 PTF1AQ7RTS3 328 aa21.03■□□□□ 0.96
CLIP3-202ENST00000585466 SRCAPQ6ZRS2 3230 aa21.02■□□□□ 0.96
CLIP3-202ENST00000585466 KIF24Q5T7B8 1368 aa21.02■□□□□ 0.96
CLIP3-202ENST00000585466 AMPHP49418 695 aa21.02■□□□□ 0.96
CLIP3-202ENST00000585466 EZH2Q15910 746 aaKnown RBP21.02■□□□□ 0.96
CLIP3-202ENST00000585466 MAP2P11137 1827 aaKnown RBP21.01■□□□□ 0.95
CLIP3-202ENST00000585466 IL2RBP14784 551 aa21.01■□□□□ 0.95
CLIP3-202ENST00000585466 LTV1Q96GA3 475 aaPredicted RBP21.01■□□□□ 0.95
CLIP3-202ENST00000585466 POLR3GLQ9BT43 218 aa21.01■□□□□ 0.95
CLIP3-202ENST00000585466 CGNL1Q0VF96 1302 aa21.01■□□□□ 0.95
CLIP3-202ENST00000585466 INSRP06213 1382 aa21■□□□□ 0.95
CLIP3-202ENST00000585466 PARD3Q8TEW0 1356 aa21■□□□□ 0.95
CLIP3-202ENST00000585466 NHSQ6T4R5 1651 aa21■□□□□ 0.95
CLIP3-202ENST00000585466 EXOC5O00471 708 aa21■□□□□ 0.95
CLIP3-202ENST00000585466 APBA3O96018 575 aa21■□□□□ 0.95
CLIP3-202ENST00000585466 MEGF6O75095 1541 aa20.99■□□□□ 0.95
CLIP3-202ENST00000585466 FLT4P35916 1363 aa20.99■□□□□ 0.95
CLIP3-202ENST00000585466 PANK3Q9H999 370 aa20.99■□□□□ 0.95
CLIP3-202ENST00000585466 EMILIN1Q9Y6C2 1016 aa20.99■□□□□ 0.95
CLIP3-202ENST00000585466 KIF7Q2M1P5 1343 aa20.99■□□□□ 0.95
CLIP3-202ENST00000585466 HSP90AB2PQ58FF8 381 aa20.98■□□□□ 0.95
CLIP3-202ENST00000585466 NBPF6Q5VWK0 638 aa20.97■□□□□ 0.95
CLIP3-202ENST00000585466 NBPF4Q96M43 638 aa20.97■□□□□ 0.95
CLIP3-202ENST00000585466 NCAPD2Q15021 1401 aa20.96■□□□□ 0.95
CLIP3-202ENST00000585466 BCL11BQ9C0K0 894 aaPredicted RBP20.96■□□□□ 0.95
CLIP3-202ENST00000585466 POLKQ9UBT6 870 aa20.93■□□□□ 0.94
CLIP3-202ENST00000585466 SMG6Q86US8 1419 aaKnown RBP20.93■□□□□ 0.94
CLIP3-202ENST00000585466 PLSCR1O15162 318 aa20.92■□□□□ 0.94
CLIP3-202ENST00000585466 KCNQ2O43526 872 aa20.92■□□□□ 0.94
CLIP3-202ENST00000585466 USHBP1Q8N6Y0 703 aa20.92■□□□□ 0.94
CLIP3-202ENST00000585466 NSD2O96028 1365 aa20.92■□□□□ 0.94
CLIP3-202ENST00000585466 LRP5O75197 1615 aa20.92■□□□□ 0.94
CLIP3-202ENST00000585466 BTAF1O14981 1849 aa20.92■□□□□ 0.94
CLIP3-202ENST00000585466 PSDA5PKW4 1024 aaPredicted RBP20.91■□□□□ 0.94
CLIP3-202ENST00000585466 WASHC2AQ641Q2 1341 aa20.91■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms