RNA–Protein interactions for RNA: ENST00000583780.1

SHMT1-210, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 332 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-210ENST00000583780 MARCH10Q8NA82 808 aaPredicted RBP31.53■■■□□ 2.64
SHMT1-210ENST00000583780 ANO8Q9HCE9 1232 aaPredicted RBP31.53■■■□□ 2.64
SHMT1-210ENST00000583780 PPP1R1BQ9UD71 204 aaPredicted RBP31.53■■■□□ 2.64
SHMT1-210ENST00000583780 PIK3C2AO00443 1686 aa31.52■■■□□ 2.64
SHMT1-210ENST00000583780 RGPD5Q99666 1765 aa31.51■■■□□ 2.64
SHMT1-210ENST00000583780 PDGFDQ9GZP0 370 aaPredicted RBP31.51■■■□□ 2.63
SHMT1-210ENST00000583780 WDR17Q8IZU2 1322 aa31.5■■■□□ 2.63
SHMT1-210ENST00000583780 ARHGEF25Q86VW2 580 aa31.5■■■□□ 2.63
SHMT1-210ENST00000583780 WNK3Q9BYP7 1800 aa31.48■■■□□ 2.63
SHMT1-210ENST00000583780 CASZ1Q86V15 1759 aa31.48■■■□□ 2.63
SHMT1-210ENST00000583780 NINLQ9Y2I6 1382 aa31.47■■■□□ 2.63
SHMT1-210ENST00000583780 BCL9O00512 1426 aa31.47■■■□□ 2.63
SHMT1-210ENST00000583780 TTC21BQ7Z4L5 1316 aa31.46■■■□□ 2.63
SHMT1-210ENST00000583780 CDCA7Q9BWT1 371 aaPredicted RBP31.45■■■□□ 2.63
SHMT1-210ENST00000583780 L3MBTL2Q969R5 705 aa31.44■■■□□ 2.62
SHMT1-210ENST00000583780 ZNF692Q9BU19 519 aaPredicted RBP31.44■■■□□ 2.62
SHMT1-210ENST00000583780 EVC2Q86UK5 1308 aa31.44■■■□□ 2.62
SHMT1-210ENST00000583780 CPSF1Q10570 1443 aaKnown RBP31.43■■■□□ 2.62
SHMT1-210ENST00000583780 CARD10Q9BWT7 1032 aa31.43■■■□□ 2.62
SHMT1-210ENST00000583780 AKAP12Q02952 1782 aa31.43■■■□□ 2.62
SHMT1-210ENST00000583780 KCNH5Q8NCM2 988 aa31.41■■■□□ 2.62
SHMT1-210ENST00000583780 PTGER2P43116 358 aa31.39■■■□□ 2.62
SHMT1-210ENST00000583780 DCAF8L1A6NGE4 600 aa31.38■■■□□ 2.61
SHMT1-210ENST00000583780 TXNRD1Q16881 649 aa31.38■■■□□ 2.61
SHMT1-210ENST00000583780 EXOC5O00471 708 aa31.37■■■□□ 2.61
SHMT1-210ENST00000583780 SOX12O15370 315 aa31.37■■■□□ 2.61
SHMT1-210ENST00000583780 ZBTB7AO95365 584 aa31.37■■■□□ 2.61
SHMT1-210ENST00000583780 TRPM1Q7Z4N2 1603 aa31.37■■■□□ 2.61
SHMT1-210ENST00000583780 TTC21AQ8NDW8 1320 aa31.35■■■□□ 2.61
SHMT1-210ENST00000583780 CSB-PGBD3P0DP91 1061 aa31.35■■■□□ 2.61
SHMT1-210ENST00000583780 ATF5Q9Y2D1 282 aaPredicted RBP31.34■■■□□ 2.61
SHMT1-210ENST00000583780 SLC15A2Q16348 729 aa31.33■■■□□ 2.61
SHMT1-210ENST00000583780 NFAT5O94916 1531 aa31.33■■■□□ 2.61
SHMT1-210ENST00000583780 SIN3AQ96ST3 1273 aa31.31■■■□□ 2.6
SHMT1-210ENST00000583780 MYOM1P52179 1685 aa31.3■■■□□ 2.6
SHMT1-210ENST00000583780 STK32BQ9NY57 414 aa31.3■■■□□ 2.6
SHMT1-210ENST00000583780 CCDC7Q96M83 1385 aa31.29■■■□□ 2.6
SHMT1-210ENST00000583780 SGIP1Q9BQI5 828 aa31.27■■■□□ 2.6
SHMT1-210ENST00000583780 KTN1Q86UP2 1357 aaKnown RBP31.27■■■□□ 2.6
SHMT1-210ENST00000583780 SYT17Q9BSW7 474 aa31.26■■■□□ 2.59
SHMT1-210ENST00000583780 ROCK2O75116 1388 aaKnown RBP31.24■■■□□ 2.59
SHMT1-210ENST00000583780 KAT6BQ8WYB5 2073 aa31.23■■■□□ 2.59
SHMT1-210ENST00000583780 USP31Q70CQ4 1352 aa31.23■■■□□ 2.59
SHMT1-210ENST00000583780 FHDC1Q9C0D6 1143 aaPredicted RBP31.23■■■□□ 2.59
SHMT1-210ENST00000583780 ABCC6O95255 1503 aa31.23■■■□□ 2.59
SHMT1-210ENST00000583780 TNS2Q63HR2 1409 aa31.23■■■□□ 2.59
SHMT1-210ENST00000583780 UTRNP46939 3433 aa31.23■■■□□ 2.59
SHMT1-210ENST00000583780 MON2Q7Z3U7 1717 aa31.22■■■□□ 2.59
SHMT1-210ENST00000583780 ACSBG1Q96GR2 724 aa31.22■■■□□ 2.59
SHMT1-210ENST00000583780 MTFR1LQ9H019 292 aa31.22■■■□□ 2.59
SHMT1-210ENST00000583780 SUGP2Q8IX01 1082 aaKnown RBP eCLIP31.21■■■□□ 2.59
SHMT1-210ENST00000583780 NHSQ6T4R5 1651 aa31.21■■■□□ 2.59
SHMT1-210ENST00000583780 ERBB3P21860 1342 aa31.19■■■□□ 2.58
SHMT1-210ENST00000583780 NME9Q86XW9 330 aa31.18■■■□□ 2.58
SHMT1-210ENST00000583780 NLRP2Q9NX02 1062 aa31.18■■■□□ 2.58
SHMT1-210ENST00000583780 USP54Q70EL1 1684 aa31.17■■■□□ 2.58
SHMT1-210ENST00000583780 CD163L1Q9NR16 1453 aa31.17■■■□□ 2.58
SHMT1-210ENST00000583780 NEUROD1Q13562 356 aa31.17■■■□□ 2.58
SHMT1-210ENST00000583780 ZNF784Q8NCA9 323 aaPredicted RBP31.17■■■□□ 2.58
SHMT1-210ENST00000583780 SBNO2Q9Y2G9 1366 aa31.16■■■□□ 2.58
SHMT1-210ENST00000583780 LTN1O94822 1766 aa31.15■■■□□ 2.58
SHMT1-210ENST00000583780 IL2RBP14784 551 aa31.15■■■□□ 2.58
SHMT1-210ENST00000583780 PAPPAQ13219 1627 aa31.14■■■□□ 2.58
SHMT1-210ENST00000583780 BTAF1O14981 1849 aa31.14■■■□□ 2.58
SHMT1-210ENST00000583780 CHD4Q14839 1912 aa31.14■■■□□ 2.57
SHMT1-210ENST00000583780 LRRC4BQ9NT99 713 aa31.13■■■□□ 2.57
SHMT1-210ENST00000583780 ANKRD24Q8TF21 1146 aa31.12■■■□□ 2.57
SHMT1-210ENST00000583780 ARXQ96QS3 562 aa31.11■■■□□ 2.57
SHMT1-210ENST00000583780 SLC12A5Q9H2X9 1139 aa31.11■■■□□ 2.57
SHMT1-210ENST00000583780 ZNF827Q17R98 1081 aa31.1■■■□□ 2.57
SHMT1-210ENST00000583780 TMC1Q8TDI8 760 aa31.06■■■□□ 2.56
SHMT1-210ENST00000583780 AKT1S1Q96B36 256 aa31.04■■■□□ 2.56
SHMT1-210ENST00000583780 MAP3K5Q99683 1374 aa31.04■■■□□ 2.56
SHMT1-210ENST00000583780 HDGFL2Q7Z4V5 671 aaPredicted RBP31.03■■■□□ 2.56
SHMT1-210ENST00000583780 IP6K1Q92551 441 aa31.01■■■□□ 2.55
SHMT1-210ENST00000583780 CARD11Q9BXL7 1154 aa31.01■■■□□ 2.55
SHMT1-210ENST00000583780 EDC4Q6P2E9 1401 aaKnown RBP31■■■□□ 2.55
SHMT1-210ENST00000583780 DDX54Q8TDD1 881 aaKnown RBP30.99■■■□□ 2.55
SHMT1-210ENST00000583780 COL24A1Q17RW2 1714 aa30.98■■■□□ 2.55
SHMT1-210ENST00000583780 A0A1W2PP64 1363 aa30.97■■■□□ 2.55
SHMT1-210ENST00000583780 SLC27A3Q5K4L6 730 aa30.97■■■□□ 2.55
SHMT1-210ENST00000583780 SLC16A10Q8TF71 515 aa30.97■■■□□ 2.55
SHMT1-210ENST00000583780 QSER1Q2KHR3 1735 aa30.97■■■□□ 2.55
SHMT1-210ENST00000583780 PUS7Q96PZ0 661 aaKnown RBP30.96■■■□□ 2.55
SHMT1-210ENST00000583780 TERF2IPQ9NYB0 399 aa30.96■■■□□ 2.55
SHMT1-210ENST00000583780 KCNQ4P56696 695 aa30.95■■■□□ 2.55
SHMT1-210ENST00000583780 LTV1Q96GA3 475 aaPredicted RBP30.95■■■□□ 2.55
SHMT1-210ENST00000583780 PNPLA7Q6ZV29 1317 aa30.95■■■□□ 2.54
SHMT1-210ENST00000583780 FBLN1P23142 703 aa30.92■■■□□ 2.54
SHMT1-210ENST00000583780 PRIM1P49642 420 aaKnown RBP30.92■■■□□ 2.54
SHMT1-210ENST00000583780 TUBGCP6Q96RT7 1819 aa30.91■■■□□ 2.54
SHMT1-210ENST00000583780 GPR162Q16538 588 aa30.91■■■□□ 2.54
SHMT1-210ENST00000583780 RGPD2P0DJD1 1756 aa30.9■■■□□ 2.54
SHMT1-210ENST00000583780 C1QTNF8P60827 252 aa30.9■■■□□ 2.54
SHMT1-210ENST00000583780 FAM208AQ9UK61 1670 aaKnown RBP30.9■■■□□ 2.54
SHMT1-210ENST00000583780 LY75O60449 1722 aa30.88■■■□□ 2.53
SHMT1-210ENST00000583780 MAP3K19Q56UN5 1328 aa30.88■■■□□ 2.53
SHMT1-210ENST00000583780 ANKRD36BQ8N2N9 1353 aa30.88■■■□□ 2.53
SHMT1-210ENST00000583780 HOXC9P31274 260 aa30.87■■■□□ 2.53
SHMT1-210ENST00000583780 TFCP2L1Q9NZI6 479 aa30.87■■■□□ 2.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms