RNA–Protein interactions for RNA: ENST00000583352.5

CDK5RAP3-227, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 3

Gene CDK5RAP3, Length 901 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-227	ENST00000583352	WDR17	Q8IZU2	1322 aa		13.84	□□□□□ -0.19
CDK5RAP3-227	ENST00000583352	PEAK1	Q9H792	1746 aa		13.84	□□□□□ -0.19
CDK5RAP3-227	ENST00000583352	CPSF1	Q10570	1443 aa	Known RBP	13.83	□□□□□ -0.2
CDK5RAP3-227	ENST00000583352	NEUROD1	Q13562	356 aa		13.83	□□□□□ -0.2
CDK5RAP3-227	ENST00000583352	CDCA7	Q9BWT1	371 aa	Predicted RBP	13.83	□□□□□ -0.2
CDK5RAP3-227	ENST00000583352	TTC21A	Q8NDW8	1320 aa		13.83	□□□□□ -0.2
CDK5RAP3-227	ENST00000583352	AKAP12	Q02952	1782 aa		13.83	□□□□□ -0.2
CDK5RAP3-227	ENST00000583352	ARHGEF25	Q86VW2	580 aa		13.82	□□□□□ -0.2
CDK5RAP3-227	ENST00000583352	AXIN2	Q9Y2T1	843 aa		13.82	□□□□□ -0.2
CDK5RAP3-227	ENST00000583352	WNK3	Q9BYP7	1800 aa		13.81	□□□□□ -0.2
CDK5RAP3-227	ENST00000583352	PLSCR1	O15162	318 aa		13.81	□□□□□ -0.2
CDK5RAP3-227	ENST00000583352	SOX12	O15370	315 aa		13.81	□□□□□ -0.2
CDK5RAP3-227	ENST00000583352	CSB-PGBD3	P0DP91	1061 aa		13.81	□□□□□ -0.2
CDK5RAP3-227	ENST00000583352	RGPD3	A6NKT7	1758 aa	Predicted RBP	13.81	□□□□□ -0.2
CDK5RAP3-227	ENST00000583352	RGPD4	Q7Z3J3	1758 aa		13.81	□□□□□ -0.2
CDK5RAP3-227	ENST00000583352	SBF2	Q86WG5	1849 aa		13.8	□□□□□ -0.2
CDK5RAP3-227	ENST00000583352	BCL11B	Q9C0K0	894 aa	Predicted RBP	13.8	□□□□□ -0.2
CDK5RAP3-227	ENST00000583352	SPON1	Q9HCB6	807 aa		13.8	□□□□□ -0.2
CDK5RAP3-227	ENST00000583352	KTN1	Q86UP2	1357 aa	Known RBP	13.8	□□□□□ -0.2
CDK5RAP3-227	ENST00000583352	KCNQ2	O43526	872 aa		13.79	□□□□□ -0.2
CDK5RAP3-227	ENST00000583352	MARCH10	Q8NA82	808 aa	Predicted RBP	13.79	□□□□□ -0.2
CDK5RAP3-227	ENST00000583352	CARD10	Q9BWT7	1032 aa		13.79	□□□□□ -0.2
CDK5RAP3-227	ENST00000583352	PPP1R1B	Q9UD71	204 aa	Predicted RBP	13.79	□□□□□ -0.2
CDK5RAP3-227	ENST00000583352	RGPD5	Q99666	1765 aa		13.78	□□□□□ -0.2
CDK5RAP3-227	ENST00000583352	CCDC7	Q96M83	1385 aa		13.78	□□□□□ -0.2
CDK5RAP3-227	ENST00000583352	BCL9	O00512	1426 aa		13.78	□□□□□ -0.2
CDK5RAP3-227	ENST00000583352	NFAT5	O94916	1531 aa		13.78	□□□□□ -0.2
CDK5RAP3-227	ENST00000583352	ABCC6	O95255	1503 aa		13.77	□□□□□ -0.21
CDK5RAP3-227	ENST00000583352	SRCAP	Q6ZRS2	3230 aa		13.77	□□□□□ -0.21
CDK5RAP3-227	ENST00000583352	MON2	Q7Z3U7	1717 aa		13.76	□□□□□ -0.21
CDK5RAP3-227	ENST00000583352	SBNO2	Q9Y2G9	1366 aa		13.76	□□□□□ -0.21
CDK5RAP3-227	ENST00000583352	EXOC5	O00471	708 aa		13.76	□□□□□ -0.21
CDK5RAP3-227	ENST00000583352	PTF1A	Q7RTS3	328 aa		13.76	□□□□□ -0.21
CDK5RAP3-227	ENST00000583352	USP31	Q70CQ4	1352 aa		13.75	□□□□□ -0.21
CDK5RAP3-227	ENST00000583352	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	13.75	□□□□□ -0.21
CDK5RAP3-227	ENST00000583352	ANO8	Q9HCE9	1232 aa	Predicted RBP	13.75	□□□□□ -0.21
CDK5RAP3-227	ENST00000583352	NINL	Q9Y2I6	1382 aa		13.74	□□□□□ -0.21
CDK5RAP3-227	ENST00000583352	DCAF8L1	A6NGE4	600 aa		13.74	□□□□□ -0.21
CDK5RAP3-227	ENST00000583352	CARD11	Q9BXL7	1154 aa		13.74	□□□□□ -0.21
CDK5RAP3-227	ENST00000583352	TNS2	Q63HR2	1409 aa		13.73	□□□□□ -0.21
CDK5RAP3-227	ENST00000583352	CLSPN	Q9HAW4	1339 aa		13.73	□□□□□ -0.21
CDK5RAP3-227	ENST00000583352	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	13.73	□□□□□ -0.21
CDK5RAP3-227	ENST00000583352	TMC1	Q8TDI8	760 aa		13.73	□□□□□ -0.21
CDK5RAP3-227	ENST00000583352	USP54	Q70EL1	1684 aa		13.72	□□□□□ -0.21
CDK5RAP3-227	ENST00000583352	TXNRD1	Q16881	649 aa		13.72	□□□□□ -0.21
CDK5RAP3-227	ENST00000583352	NME9	Q86XW9	330 aa		13.72	□□□□□ -0.21
CDK5RAP3-227	ENST00000583352	PROM2	Q8N271	834 aa		13.72	□□□□□ -0.21
CDK5RAP3-227	ENST00000583352	NLRP2	Q9NX02	1062 aa		13.72	□□□□□ -0.21
CDK5RAP3-227	ENST00000583352	STK32B	Q9NY57	414 aa		13.72	□□□□□ -0.21
CDK5RAP3-227	ENST00000583352	CASZ1	Q86V15	1759 aa		13.72	□□□□□ -0.21
CDK5RAP3-227	ENST00000583352	ERBB3	P21860	1342 aa		13.71	□□□□□ -0.21
CDK5RAP3-227	ENST00000583352	YY1	P25490	414 aa		13.71	□□□□□ -0.21
CDK5RAP3-227	ENST00000583352	CD163L1	Q9NR16	1453 aa		13.71	□□□□□ -0.21
CDK5RAP3-227	ENST00000583352	IL2RB	P14784	551 aa		13.7	□□□□□ -0.22
CDK5RAP3-227	ENST00000583352	TERF2IP	Q9NYB0	399 aa		13.7	□□□□□ -0.22
CDK5RAP3-227	ENST00000583352	LTN1	O94822	1766 aa		13.7	□□□□□ -0.22
CDK5RAP3-227	ENST00000583352	ZBTB7A	O95365	584 aa		13.69	□□□□□ -0.22
CDK5RAP3-227	ENST00000583352	SLC15A2	Q16348	729 aa		13.69	□□□□□ -0.22
CDK5RAP3-227	ENST00000583352	ANKRD24	Q8TF21	1146 aa		13.69	□□□□□ -0.22
CDK5RAP3-227	ENST00000583352	SLC12A5	Q9H2X9	1139 aa		13.69	□□□□□ -0.22
CDK5RAP3-227	ENST00000583352	EDC4	Q6P2E9	1401 aa	Known RBP	13.69	□□□□□ -0.22
CDK5RAP3-227	ENST00000583352	TONSL	Q96HA7	1378 aa		13.69	□□□□□ -0.22
CDK5RAP3-227	ENST00000583352	NHS	Q6T4R5	1651 aa		13.69	□□□□□ -0.22
CDK5RAP3-227	ENST00000583352	ACSBG1	Q96GR2	724 aa		13.68	□□□□□ -0.22
CDK5RAP3-227	ENST00000583352	PUS7	Q96PZ0	661 aa	Known RBP	13.68	□□□□□ -0.22
CDK5RAP3-227	ENST00000583352	PDGFD	Q9GZP0	370 aa	Predicted RBP	13.68	□□□□□ -0.22
CDK5RAP3-227	ENST00000583352		A0A1W2PP64	1363 aa		13.67	□□□□□ -0.22
CDK5RAP3-227	ENST00000583352	ATF5	Q9Y2D1	282 aa	Predicted RBP	13.66	□□□□□ -0.22
CDK5RAP3-227	ENST00000583352	PTGER2	P43116	358 aa		13.65	□□□□□ -0.22
CDK5RAP3-227	ENST00000583352	MTFR1L	Q9H019	292 aa		13.65	□□□□□ -0.22
CDK5RAP3-227	ENST00000583352	MYOM1	P52179	1685 aa		13.65	□□□□□ -0.22
CDK5RAP3-227	ENST00000583352	IP6K1	Q92551	441 aa		13.64	□□□□□ -0.23
CDK5RAP3-227	ENST00000583352	BTAF1	O14981	1849 aa		13.63	□□□□□ -0.23
CDK5RAP3-227	ENST00000583352	FAM208A	Q9UK61	1670 aa	Known RBP	13.63	□□□□□ -0.23
CDK5RAP3-227	ENST00000583352	PAPPA	Q13219	1627 aa		13.62	□□□□□ -0.23
CDK5RAP3-227	ENST00000583352	SLC24A1	O60721	1099 aa		13.62	□□□□□ -0.23
CDK5RAP3-227	ENST00000583352	LTV1	Q96GA3	475 aa	Predicted RBP	13.62	□□□□□ -0.23
CDK5RAP3-227	ENST00000583352	COG3	Q96JB2	828 aa		13.62	□□□□□ -0.23
CDK5RAP3-227	ENST00000583352	KAT6B	Q8WYB5	2073 aa		13.61	□□□□□ -0.23
CDK5RAP3-227	ENST00000583352	DDX54	Q8TDD1	881 aa	Known RBP	13.61	□□□□□ -0.23
CDK5RAP3-227	ENST00000583352	FHDC1	Q9C0D6	1143 aa	Predicted RBP	13.61	□□□□□ -0.23
CDK5RAP3-227	ENST00000583352	ST20-MTHFS	A0A0A6YYL1	179 aa		13.6	□□□□□ -0.23
CDK5RAP3-227	ENST00000583352	AMPH	P49418	695 aa		13.6	□□□□□ -0.23
CDK5RAP3-227	ENST00000583352	TESK2	Q96S53	571 aa		13.6	□□□□□ -0.23
CDK5RAP3-227	ENST00000583352	SGIP1	Q9BQI5	828 aa		13.6	□□□□□ -0.23
CDK5RAP3-227	ENST00000583352	SYT17	Q9BSW7	474 aa		13.6	□□□□□ -0.23
CDK5RAP3-227	ENST00000583352	ZNF827	Q17R98	1081 aa		13.59	□□□□□ -0.23
CDK5RAP3-227	ENST00000583352	MAP3K19	Q56UN5	1328 aa		13.59	□□□□□ -0.23
CDK5RAP3-227	ENST00000583352	HOXC9	P31274	260 aa		13.58	□□□□□ -0.24
CDK5RAP3-227	ENST00000583352	SLC27A3	Q5K4L6	730 aa		13.58	□□□□□ -0.24
CDK5RAP3-227	ENST00000583352	ARX	Q96QS3	562 aa		13.58	□□□□□ -0.24
CDK5RAP3-227	ENST00000583352	LRRC4B	Q9NT99	713 aa		13.58	□□□□□ -0.24
CDK5RAP3-227	ENST00000583352	ANKRD36B	Q8N2N9	1353 aa		13.58	□□□□□ -0.24
CDK5RAP3-227	ENST00000583352	SLC16A10	Q8TF71	515 aa		13.56	□□□□□ -0.24
CDK5RAP3-227	ENST00000583352	AKT1S1	Q96B36	256 aa		13.56	□□□□□ -0.24
CDK5RAP3-227	ENST00000583352	SYTL4	Q96C24	671 aa	Predicted RBP	13.56	□□□□□ -0.24
CDK5RAP3-227	ENST00000583352	RTL1	A6NKG5	1358 aa		13.56	□□□□□ -0.24
CDK5RAP3-227	ENST00000583352	MAP3K5	Q99683	1374 aa		13.56	□□□□□ -0.24
CDK5RAP3-227	ENST00000583352	FBLN1	P23142	703 aa		13.55	□□□□□ -0.24
CDK5RAP3-227	ENST00000583352	PRIM1	P49642	420 aa	Known RBP	13.55	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms