RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 PARD3Q8TEW0 1356 aa28.95■■■□□ 2.22
SHMT1-209ENST00000582653 R3HDM1Q15032 1099 aaKnown RBP28.94■■■□□ 2.22
SHMT1-209ENST00000582653 DDB1Q16531 1140 aa28.94■■■□□ 2.22
SHMT1-209ENST00000582653 SLC12A5Q9H2X9 1139 aa28.94■■■□□ 2.22
SHMT1-209ENST00000582653 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.93■■■□□ 2.22
SHMT1-209ENST00000582653 PARP4Q9UKK3 1724 aaKnown RBP28.92■■■□□ 2.22
SHMT1-209ENST00000582653 ST20-MTHFSA0A0A6YYL1 179 aa28.92■■■□□ 2.22
SHMT1-209ENST00000582653 CDCA7Q9BWT1 371 aaPredicted RBP28.92■■■□□ 2.22
SHMT1-209ENST00000582653 CD163L1Q9NR16 1453 aa28.91■■■□□ 2.22
SHMT1-209ENST00000582653 USP31Q70CQ4 1352 aa28.91■■■□□ 2.22
SHMT1-209ENST00000582653 HDGFL2Q7Z4V5 671 aaPredicted RBP28.91■■■□□ 2.22
SHMT1-209ENST00000582653 CARD10Q9BWT7 1032 aa28.91■■■□□ 2.22
SHMT1-209ENST00000582653 TESK2Q96S53 571 aa28.89■■■□□ 2.22
SHMT1-209ENST00000582653 SLC24A1O60721 1099 aa28.88■■■□□ 2.21
SHMT1-209ENST00000582653 CSB-PGBD3P0DP91 1061 aa28.88■■■□□ 2.21
SHMT1-209ENST00000582653 MON2Q7Z3U7 1717 aa28.88■■■□□ 2.21
SHMT1-209ENST00000582653 NME9Q86XW9 330 aa28.87■■■□□ 2.21
SHMT1-209ENST00000582653 TERF2IPQ9NYB0 399 aa28.87■■■□□ 2.21
SHMT1-209ENST00000582653 OVOS2A0A0G2JMS6 1433 aa28.86■■■□□ 2.21
SHMT1-209ENST00000582653 OVOS2A0A0J9YW53 1432 aa28.86■■■□□ 2.21
SHMT1-209ENST00000582653 OVOS2Q6IE36 1432 aa28.86■■■□□ 2.21
SHMT1-209ENST00000582653 NFAT5O94916 1531 aa28.85■■■□□ 2.21
SHMT1-209ENST00000582653 LRP5O75197 1615 aa28.85■■■□□ 2.21
SHMT1-209ENST00000582653 NBPF14Q5TI25 921 aa28.84■■■□□ 2.21
SHMT1-209ENST00000582653 PCGF6Q9BYE7 350 aa28.84■■■□□ 2.21
SHMT1-209ENST00000582653 PLSCR1O15162 318 aa28.83■■■□□ 2.21
SHMT1-209ENST00000582653 MARCH10Q8NA82 808 aaPredicted RBP28.83■■■□□ 2.21
SHMT1-209ENST00000582653 EXOC5O00471 708 aa28.82■■■□□ 2.2
SHMT1-209ENST00000582653 RGPD5Q99666 1765 aa28.81■■■□□ 2.2
SHMT1-209ENST00000582653 A0A1W2PP64 1363 aa28.81■■■□□ 2.2
SHMT1-209ENST00000582653 BCL11BQ9C0K0 894 aaPredicted RBP28.81■■■□□ 2.2
SHMT1-209ENST00000582653 EDC4Q6P2E9 1401 aaKnown RBP28.8■■■□□ 2.2
SHMT1-209ENST00000582653 CCDC7Q96M83 1385 aa28.8■■■□□ 2.2
SHMT1-209ENST00000582653 PEAK1Q9H792 1746 aa28.8■■■□□ 2.2
SHMT1-209ENST00000582653 ABCC6O95255 1503 aa28.79■■■□□ 2.2
SHMT1-209ENST00000582653 BCL9O00512 1426 aa28.78■■■□□ 2.2
SHMT1-209ENST00000582653 LRRC37A3O60309 1634 aa28.78■■■□□ 2.2
SHMT1-209ENST00000582653 USP54Q70EL1 1684 aa28.76■■■□□ 2.19
SHMT1-209ENST00000582653 ERBB3P21860 1342 aa28.75■■■□□ 2.19
SHMT1-209ENST00000582653 RREB1Q92766 1687 aa28.75■■■□□ 2.19
SHMT1-209ENST00000582653 USP47Q96K76 1375 aa28.75■■■□□ 2.19
SHMT1-209ENST00000582653 NINLQ9Y2I6 1382 aa28.75■■■□□ 2.19
SHMT1-209ENST00000582653 PTF1AQ7RTS3 328 aa28.74■■■□□ 2.19
SHMT1-209ENST00000582653 NLRP2Q9NX02 1062 aa28.73■■■□□ 2.19
SHMT1-209ENST00000582653 SBF2Q86WG5 1849 aa28.72■■■□□ 2.19
SHMT1-209ENST00000582653 ANKRD24Q8TF21 1146 aa28.71■■■□□ 2.19
SHMT1-209ENST00000582653 NUP188Q5SRE5 1749 aa28.71■■■□□ 2.19
SHMT1-209ENST00000582653 WNK3Q9BYP7 1800 aa28.71■■■□□ 2.19
SHMT1-209ENST00000582653 TMF1P82094 1093 aa28.7■■■□□ 2.18
SHMT1-209ENST00000582653 IP6K1Q92551 441 aa28.7■■■□□ 2.18
SHMT1-209ENST00000582653 PROM2Q8N271 834 aa28.69■■■□□ 2.18
SHMT1-209ENST00000582653 IL2RBP14784 551 aa28.68■■■□□ 2.18
SHMT1-209ENST00000582653 TIMELESSQ9UNS1 1208 aa28.68■■■□□ 2.18
SHMT1-209ENST00000582653 COG3Q96JB2 828 aa28.67■■■□□ 2.18
SHMT1-209ENST00000582653 LTN1O94822 1766 aa28.65■■■□□ 2.18
SHMT1-209ENST00000582653 CLSPNQ9HAW4 1339 aa28.65■■■□□ 2.18
SHMT1-209ENST00000582653 RGPD3A6NKT7 1758 aaPredicted RBP28.63■■■□□ 2.17
SHMT1-209ENST00000582653 RGPD4Q7Z3J3 1758 aa28.63■■■□□ 2.17
SHMT1-209ENST00000582653 TNS2Q63HR2 1409 aa28.63■■■□□ 2.17
SHMT1-209ENST00000582653 FBLN1P23142 703 aa28.63■■■□□ 2.17
SHMT1-209ENST00000582653 ANKRD36BQ8N2N9 1353 aa28.62■■■□□ 2.17
SHMT1-209ENST00000582653 KCNQ2O43526 872 aa28.62■■■□□ 2.17
SHMT1-209ENST00000582653 SPON1Q9HCB6 807 aa28.61■■■□□ 2.17
SHMT1-209ENST00000582653 TXNRD1Q16881 649 aa28.6■■■□□ 2.17
SHMT1-209ENST00000582653 MAP3K19Q56UN5 1328 aa28.59■■■□□ 2.17
SHMT1-209ENST00000582653 FYB1O15117 783 aa28.58■■■□□ 2.17
SHMT1-209ENST00000582653 CDCA8Q53HL2 280 aa28.58■■■□□ 2.17
SHMT1-209ENST00000582653 LTV1Q96GA3 475 aaPredicted RBP28.58■■■□□ 2.17
SHMT1-209ENST00000582653 ANO8Q9HCE9 1232 aaPredicted RBP28.58■■■□□ 2.17
SHMT1-209ENST00000582653 HOXC9P31274 260 aa28.57■■■□□ 2.16
SHMT1-209ENST00000582653 AMPHP49418 695 aa28.57■■■□□ 2.16
SHMT1-209ENST00000582653 ACSBG1Q96GR2 724 aa28.57■■■□□ 2.16
SHMT1-209ENST00000582653 GGNBP2Q9H3C7 697 aa28.56■■■□□ 2.16
SHMT1-209ENST00000582653 CCER1Q8TC90 406 aaPredicted RBP28.54■■■□□ 2.16
SHMT1-209ENST00000582653 SLC15A2Q16348 729 aa28.52■■■□□ 2.16
SHMT1-209ENST00000582653 DDX54Q8TDD1 881 aaKnown RBP28.51■■■□□ 2.15
SHMT1-209ENST00000582653 STK32BQ9NY57 414 aa28.51■■■□□ 2.15
SHMT1-209ENST00000582653 PPP1R1BQ9UD71 204 aaPredicted RBP28.5■■■□□ 2.15
SHMT1-209ENST00000582653 RRS1Q15050 365 aaKnown RBP28.49■■■□□ 2.15
SHMT1-209ENST00000582653 CARD14Q9BXL6 1004 aa28.49■■■□□ 2.15
SHMT1-209ENST00000582653 PDGFDQ9GZP0 370 aaPredicted RBP28.49■■■□□ 2.15
SHMT1-209ENST00000582653 NHSQ6T4R5 1651 aa28.48■■■□□ 2.15
SHMT1-209ENST00000582653 RTL1A6NKG5 1358 aa28.45■■■□□ 2.14
SHMT1-209ENST00000582653 FAM208AQ9UK61 1670 aaKnown RBP28.45■■■□□ 2.14
SHMT1-209ENST00000582653 NBPF6Q5VWK0 638 aa28.44■■■□□ 2.14
SHMT1-209ENST00000582653 ZCRB1Q8TBF4 217 aaKnown RBP28.44■■■□□ 2.14
SHMT1-209ENST00000582653 NBPF4Q96M43 638 aa28.44■■■□□ 2.14
SHMT1-209ENST00000582653 MYOM1P52179 1685 aa28.44■■■□□ 2.14
SHMT1-209ENST00000582653 POLR3GLQ9BT43 218 aa28.43■■■□□ 2.14
SHMT1-209ENST00000582653 ZBTB7AO95365 584 aa28.42■■■□□ 2.14
SHMT1-209ENST00000582653 CASZ1Q86V15 1759 aa28.42■■■□□ 2.14
SHMT1-209ENST00000582653 NSD3Q9BZ95 1437 aa28.41■■■□□ 2.14
SHMT1-209ENST00000582653 KIF20BQ96Q89 1820 aa28.39■■■□□ 2.14
SHMT1-209ENST00000582653 PTGER2P43116 358 aa28.39■■■□□ 2.14
SHMT1-209ENST00000582653 HSP90AB2PQ58FF8 381 aa28.39■■■□□ 2.14
SHMT1-209ENST00000582653 LRRC4BQ9NT99 713 aa28.39■■■□□ 2.14
SHMT1-209ENST00000582653 ATF5Q9Y2D1 282 aaPredicted RBP28.39■■■□□ 2.14
SHMT1-209ENST00000582653 CGNL1Q0VF96 1302 aa28.39■■■□□ 2.13
SHMT1-209ENST00000582653 RGPD2P0DJD1 1756 aa28.38■■■□□ 2.13
SHMT1-209ENST00000582653 HSPA5P11021 654 aaKnown RBP28.38■■■□□ 2.13
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms