RNA–Protein interactions for RNA: ENST00000582092.1

SS18-220, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 215 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-220ENST00000582092 NEFMP07197 916 aa12.23□□□□□ -0.45
SS18-220ENST00000582092 PNNQ9H307 717 aaKnown RBP12.23□□□□□ -0.45
SS18-220ENST00000582092 PHRF1Q9P1Y6 1649 aaKnown RBP12.22□□□□□ -0.45
SS18-220ENST00000582092 USP6P35125 1406 aa12.22□□□□□ -0.45
SS18-220ENST00000582092 FAM83GA6ND36 823 aa12.22□□□□□ -0.45
SS18-220ENST00000582092 VPS72Q15906 364 aa12.22□□□□□ -0.45
SS18-220ENST00000582092 NUTM2GQ5VZR2 741 aa12.22□□□□□ -0.45
SS18-220ENST00000582092 COG3Q96JB2 828 aa12.22□□□□□ -0.45
SS18-220ENST00000582092 BTG4Q9NY30 223 aa12.22□□□□□ -0.45
SS18-220ENST00000582092 RGS12O14924 1447 aa12.21□□□□□ -0.45
SS18-220ENST00000582092 NLRP6P59044 892 aa12.21□□□□□ -0.45
SS18-220ENST00000582092 TTC21AQ8NDW8 1320 aa12.2□□□□□ -0.46
SS18-220ENST00000582092 PPM1GO15355 546 aaPredicted RBP12.2□□□□□ -0.46
SS18-220ENST00000582092 EVA1CP58658 441 aa12.2□□□□□ -0.46
SS18-220ENST00000582092 ERICH6BQ5W0A0 696 aa12.2□□□□□ -0.46
SS18-220ENST00000582092 CCDC146Q8IYE0 955 aa12.2□□□□□ -0.46
SS18-220ENST00000582092 BLMP54132 1417 aaPredicted RBP12.2□□□□□ -0.46
SS18-220ENST00000582092 EDC4Q6P2E9 1401 aaKnown RBP12.2□□□□□ -0.46
SS18-220ENST00000582092 A0A0G2JS52 829 aa12.19□□□□□ -0.46
SS18-220ENST00000582092 U2SURPO15042 1029 aaKnown RBP12.19□□□□□ -0.46
SS18-220ENST00000582092 U2AF1L5P0DN76 240 aaPredicted RBP12.19□□□□□ -0.46
SS18-220ENST00000582092 ZC3H6P61129 1189 aaKnown RBP12.19□□□□□ -0.46
SS18-220ENST00000582092 U2AF1Q01081 240 aaKnown RBP eCLIP12.19□□□□□ -0.46
SS18-220ENST00000582092 MYT1Q01538 1121 aa12.19□□□□□ -0.46
SS18-220ENST00000582092 RUNDC1Q96C34 613 aa12.19□□□□□ -0.46
SS18-220ENST00000582092 NRAPQ86VF7 1730 aa12.19□□□□□ -0.46
SS18-220ENST00000582092 KIAA0232Q92628 1395 aa12.18□□□□□ -0.46
SS18-220ENST00000582092 KCNH5Q8NCM2 988 aa12.18□□□□□ -0.46
SS18-220ENST00000582092 UPF1Q92900 1129 aaKnown RBP eCLIP12.18□□□□□ -0.46
SS18-220ENST00000582092 MON2Q7Z3U7 1717 aa12.17□□□□□ -0.46
SS18-220ENST00000582092 USP19O94966 1318 aa12.17□□□□□ -0.46
SS18-220ENST00000582092 APAF1O14727 1248 aa12.17□□□□□ -0.46
SS18-220ENST00000582092 DIAPH1O60610 1272 aaKnown RBP12.17□□□□□ -0.46
SS18-220ENST00000582092 GCP02774 474 aa12.17□□□□□ -0.46
SS18-220ENST00000582092 GOLGA2Q08379 1002 aa12.17□□□□□ -0.46
SS18-220ENST00000582092 CCDC125Q86Z20 511 aa12.17□□□□□ -0.46
SS18-220ENST00000582092 GLI3P10071 1580 aa12.17□□□□□ -0.46
SS18-220ENST00000582092 CPDO75976 1380 aa12.17□□□□□ -0.46
SS18-220ENST00000582092 BRWD3Q6RI45 1802 aa12.16□□□□□ -0.46
SS18-220ENST00000582092 TTC21BQ7Z4L5 1316 aa12.16□□□□□ -0.46
SS18-220ENST00000582092 MAPK8IP3Q9UPT6 1336 aa12.16□□□□□ -0.46
SS18-220ENST00000582092 CD163L1Q9NR16 1453 aa12.16□□□□□ -0.46
SS18-220ENST00000582092 CHRNA2Q15822 529 aa12.16□□□□□ -0.46
SS18-220ENST00000582092 CPSF1Q10570 1443 aaKnown RBP12.16□□□□□ -0.46
SS18-220ENST00000582092 NRKQ7Z2Y5 1582 aa12.16□□□□□ -0.46
SS18-220ENST00000582092 ZBTB7CA1YPR0 619 aa12.15□□□□□ -0.46
SS18-220ENST00000582092 IRX6P78412 446 aaPredicted RBP12.15□□□□□ -0.46
SS18-220ENST00000582092 NME9Q86XW9 330 aa12.15□□□□□ -0.46
SS18-220ENST00000582092 SEPT12Q8IYM1 358 aa12.15□□□□□ -0.46
SS18-220ENST00000582092 STRN4Q9NRL3 753 aa12.15□□□□□ -0.46
SS18-220ENST00000582092 RCAN3Q9UKA8 241 aa12.15□□□□□ -0.46
SS18-220ENST00000582092 KIF20BQ96Q89 1820 aa12.14□□□□□ -0.47
SS18-220ENST00000582092 SSH2Q76I76 1423 aa12.14□□□□□ -0.47
SS18-220ENST00000582092 PIK3C2AO00443 1686 aa12.14□□□□□ -0.47
SS18-220ENST00000582092 ONECUT3O60422 494 aaPredicted RBP12.14□□□□□ -0.47
SS18-220ENST00000582092 SF3B2Q13435 895 aaKnown RBP12.14□□□□□ -0.47
SS18-220ENST00000582092 NEUROD2Q15784 382 aa12.14□□□□□ -0.47
SS18-220ENST00000582092 SPATA31A5Q5VU36 1347 aa12.13□□□□□ -0.47
SS18-220ENST00000582092 SPATA31A7Q8IWB4 1347 aa12.13□□□□□ -0.47
SS18-220ENST00000582092 SLIT3O75094 1523 aa12.13□□□□□ -0.47
SS18-220ENST00000582092 FAM98CQ17RN3 349 aaKnown RBP12.13□□□□□ -0.47
SS18-220ENST00000582092 KRT27Q7Z3Y8 459 aa12.13□□□□□ -0.47
SS18-220ENST00000582092 ANKRD26Q9UPS8 1709 aa12.12□□□□□ -0.47
SS18-220ENST00000582092 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.12□□□□□ -0.47
SS18-220ENST00000582092 CDCA7LQ96GN5 454 aa12.12□□□□□ -0.47
SS18-220ENST00000582092 PPP4R2Q9NY27 417 aa12.12□□□□□ -0.47
SS18-220ENST00000582092 SPATA31A1Q5TZJ5 1347 aa12.11□□□□□ -0.47
SS18-220ENST00000582092 AATKQ6ZMQ8 1374 aa12.11□□□□□ -0.47
SS18-220ENST00000582092 E9PSI1 815 aa12.11□□□□□ -0.47
SS18-220ENST00000582092 TCP11L2Q8N4U5 519 aa12.11□□□□□ -0.47
SS18-220ENST00000582092 THRAP3Q9Y2W1 955 aaKnown RBP12.11□□□□□ -0.47
SS18-220ENST00000582092 LMO7Q8WWI1 1683 aa12.1□□□□□ -0.47
SS18-220ENST00000582092 SOX12O15370 315 aa12.1□□□□□ -0.47
SS18-220ENST00000582092 USP35Q9P2H5 1018 aa12.1□□□□□ -0.47
SS18-220ENST00000582092 POLKQ9UBT6 870 aa12.1□□□□□ -0.47
SS18-220ENST00000582092 USP54Q70EL1 1684 aa12.1□□□□□ -0.47
SS18-220ENST00000582092 CAMTA1Q9Y6Y1 1673 aa12.1□□□□□ -0.47
SS18-220ENST00000582092 USP31Q70CQ4 1352 aa12.09□□□□□ -0.47
SS18-220ENST00000582092 FCHSD2O94868 740 aa12.09□□□□□ -0.47
SS18-220ENST00000582092 BARGINQ6ZT62 677 aa12.09□□□□□ -0.47
SS18-220ENST00000582092 RGPD5Q99666 1765 aa12.09□□□□□ -0.47
SS18-220ENST00000582092 LTN1O94822 1766 aa12.08□□□□□ -0.48
SS18-220ENST00000582092 CSB-PGBD3P0DP91 1061 aa12.08□□□□□ -0.48
SS18-220ENST00000582092 NCBP3Q53F19 620 aaKnown RBP12.08□□□□□ -0.48
SS18-220ENST00000582092 LARP1Q6PKG0 1096 aaKnown RBP12.08□□□□□ -0.48
SS18-220ENST00000582092 TOM1L2Q6ZVM7 507 aa12.08□□□□□ -0.48
SS18-220ENST00000582092 ARHGEF25Q86VW2 580 aa12.08□□□□□ -0.48
SS18-220ENST00000582092 WDR63Q8IWG1 891 aa12.08□□□□□ -0.48
SS18-220ENST00000582092 MYH16Q9H6N6 1097 aa12.08□□□□□ -0.48
SS18-220ENST00000582092 ZRANB1Q9UGI0 708 aa12.08□□□□□ -0.48
SS18-220ENST00000582092 RRP7AQ9Y3A4 280 aaKnown RBP12.08□□□□□ -0.48
SS18-220ENST00000582092 CRB1P82279 1406 aa12.08□□□□□ -0.48
SS18-220ENST00000582092 COL5A2P05997 1499 aaPredicted RBP12.08□□□□□ -0.48
SS18-220ENST00000582092 ABCC6O95255 1503 aa12.07□□□□□ -0.48
SS18-220ENST00000582092 AMPHP49418 695 aa12.07□□□□□ -0.48
SS18-220ENST00000582092 RRP1P56182 461 aaKnown RBP12.07□□□□□ -0.48
SS18-220ENST00000582092 SLFN5Q08AF3 891 aa12.07□□□□□ -0.48
SS18-220ENST00000582092 WWC1Q8IX03 1113 aa12.07□□□□□ -0.48
SS18-220ENST00000582092 EMILIN1Q9Y6C2 1016 aa12.07□□□□□ -0.48
SS18-220ENST00000582092 COL18A1P39060 1754 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms