RNA–Protein interactions for RNA: ENST00000581536.5

TOP3A-211, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 5

Gene TOP3A, Length 766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-211ENST00000581536 KIAA0232Q92628 1395 aa13.73□□□□□ -0.21
TOP3A-211ENST00000581536 SLC12A5Q9H2X9 1139 aa13.73□□□□□ -0.21
TOP3A-211ENST00000581536 PRDM11Q9NQV5 511 aa13.73□□□□□ -0.21
TOP3A-211ENST00000581536 NLRP6P59044 892 aa13.72□□□□□ -0.21
TOP3A-211ENST00000581536 NLRP13Q86W25 1043 aa13.72□□□□□ -0.21
TOP3A-211ENST00000581536 TESK2Q96S53 571 aa13.72□□□□□ -0.21
TOP3A-211ENST00000581536 ZRANB1Q9UGI0 708 aa13.72□□□□□ -0.21
TOP3A-211ENST00000581536 USP6P35125 1406 aa13.72□□□□□ -0.21
TOP3A-211ENST00000581536 SSH2Q76I76 1423 aa13.72□□□□□ -0.21
TOP3A-211ENST00000581536 GCP02774 474 aa13.71□□□□□ -0.21
TOP3A-211ENST00000581536 GSE1Q14687 1217 aa13.71□□□□□ -0.21
TOP3A-211ENST00000581536 SEPT12Q8IYM1 358 aa13.71□□□□□ -0.21
TOP3A-211ENST00000581536 TMC1Q8TDI8 760 aa13.71□□□□□ -0.21
TOP3A-211ENST00000581536 STRN4Q9NRL3 753 aa13.71□□□□□ -0.21
TOP3A-211ENST00000581536 TTC21BQ7Z4L5 1316 aa13.7□□□□□ -0.22
TOP3A-211ENST00000581536 ZBTB7CA1YPR0 619 aa13.7□□□□□ -0.22
TOP3A-211ENST00000581536 ONECUT3O60422 494 aaPredicted RBP13.7□□□□□ -0.22
TOP3A-211ENST00000581536 FAM98CQ17RN3 349 aaKnown RBP13.7□□□□□ -0.22
TOP3A-211ENST00000581536 DCAF8Q5TAQ9 597 aa13.7□□□□□ -0.22
TOP3A-211ENST00000581536 CCER1Q8TC90 406 aaPredicted RBP13.7□□□□□ -0.22
TOP3A-211ENST00000581536 TSPYL2Q9H2G4 693 aaPredicted RBP13.7□□□□□ -0.22
TOP3A-211ENST00000581536 SBNO2Q9Y2G9 1366 aa13.7□□□□□ -0.22
TOP3A-211ENST00000581536 PIK3C2AO00443 1686 aa13.69□□□□□ -0.22
TOP3A-211ENST00000581536 USP19O94966 1318 aa13.69□□□□□ -0.22
TOP3A-211ENST00000581536 RGPD5Q99666 1765 aa13.69□□□□□ -0.22
TOP3A-211ENST00000581536 CPSF1Q10570 1443 aaKnown RBP13.68□□□□□ -0.22
TOP3A-211ENST00000581536 EVA1CP58658 441 aa13.68□□□□□ -0.22
TOP3A-211ENST00000581536 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.68□□□□□ -0.22
TOP3A-211ENST00000581536 CAMTA1Q9Y6Y1 1673 aa13.68□□□□□ -0.22
TOP3A-211ENST00000581536 ATAD2Q6PL18 1390 aa13.68□□□□□ -0.22
TOP3A-211ENST00000581536 KTN1Q86UP2 1357 aaKnown RBP13.68□□□□□ -0.22
TOP3A-211ENST00000581536 CD163L1Q9NR16 1453 aa13.67□□□□□ -0.22
TOP3A-211ENST00000581536 SPATA31A5Q5VU36 1347 aa13.67□□□□□ -0.22
TOP3A-211ENST00000581536 SPATA31A7Q8IWB4 1347 aa13.67□□□□□ -0.22
TOP3A-211ENST00000581536 NRKQ7Z2Y5 1582 aa13.67□□□□□ -0.22
TOP3A-211ENST00000581536 SOX12O15370 315 aa13.67□□□□□ -0.22
TOP3A-211ENST00000581536 BRD4O60885 1362 aaPredicted RBP13.67□□□□□ -0.22
TOP3A-211ENST00000581536 MON2Q7Z3U7 1717 aa13.67□□□□□ -0.22
TOP3A-211ENST00000581536 FAM182BQ5T319 152 aa13.66□□□□□ -0.22
TOP3A-211ENST00000581536 LARP1Q6PKG0 1096 aaKnown RBP13.66□□□□□ -0.22
TOP3A-211ENST00000581536 USP35Q9P2H5 1018 aa13.66□□□□□ -0.22
TOP3A-211ENST00000581536 TIMELESSQ9UNS1 1208 aa13.66□□□□□ -0.22
TOP3A-211ENST00000581536 CLSPNQ9HAW4 1339 aa13.65□□□□□ -0.22
TOP3A-211ENST00000581536 A0A0G2JS52 829 aa13.65□□□□□ -0.22
TOP3A-211ENST00000581536 MYT1Q01538 1121 aa13.65□□□□□ -0.22
TOP3A-211ENST00000581536 EVX2Q03828 476 aa13.65□□□□□ -0.22
TOP3A-211ENST00000581536 NME9Q86XW9 330 aa13.65□□□□□ -0.22
TOP3A-211ENST00000581536 CIZ1Q9ULV3 898 aaPredicted RBP13.65□□□□□ -0.22
TOP3A-211ENST00000581536 AXIN2Q9Y2T1 843 aa13.65□□□□□ -0.22
TOP3A-211ENST00000581536 COL18A1P39060 1754 aa13.65□□□□□ -0.22
TOP3A-211ENST00000581536 SPATA31A1Q5TZJ5 1347 aa13.64□□□□□ -0.23
TOP3A-211ENST00000581536 LMO7Q8WWI1 1683 aa13.64□□□□□ -0.23
TOP3A-211ENST00000581536 CPDO75976 1380 aa13.64□□□□□ -0.23
TOP3A-211ENST00000581536 USP47Q96K76 1375 aa13.64□□□□□ -0.23
TOP3A-211ENST00000581536 KRT27Q7Z3Y8 459 aa13.64□□□□□ -0.23
TOP3A-211ENST00000581536 TTC21AQ8NDW8 1320 aa13.64□□□□□ -0.23
TOP3A-211ENST00000581536 HDGFL2Q7Z4V5 671 aaPredicted RBP13.63□□□□□ -0.23
TOP3A-211ENST00000581536 PUS7Q96PZ0 661 aaKnown RBP13.63□□□□□ -0.23
TOP3A-211ENST00000581536 SLIT3O75094 1523 aa13.63□□□□□ -0.23
TOP3A-211ENST00000581536 ARHGEF25Q86VW2 580 aa13.62□□□□□ -0.23
TOP3A-211ENST00000581536 ZNF579Q8NAF0 562 aaKnown RBP13.62□□□□□ -0.23
TOP3A-211ENST00000581536 TMF1P82094 1093 aa13.61□□□□□ -0.23
TOP3A-211ENST00000581536 TERF2IPQ9NYB0 399 aa13.61□□□□□ -0.23
TOP3A-211ENST00000581536 A0A1W2PP64 1363 aa13.6□□□□□ -0.23
TOP3A-211ENST00000581536 FBLN1P23142 703 aa13.6□□□□□ -0.23
TOP3A-211ENST00000581536 DEFB132Q7Z7B7 95 aa13.59□□□□□ -0.23
TOP3A-211ENST00000581536 KCNH5Q8NCM2 988 aa13.59□□□□□ -0.23
TOP3A-211ENST00000581536 AATKQ6ZMQ8 1374 aa13.58□□□□□ -0.23
TOP3A-211ENST00000581536 USP31Q70CQ4 1352 aa13.58□□□□□ -0.23
TOP3A-211ENST00000581536 SLC24A1O60721 1099 aa13.58□□□□□ -0.24
TOP3A-211ENST00000581536 CLCN6P51797 869 aa13.58□□□□□ -0.24
TOP3A-211ENST00000581536 COL5A2P05997 1499 aaPredicted RBP13.58□□□□□ -0.24
TOP3A-211ENST00000581536 THSD7AQ9UPZ6 1657 aa13.58□□□□□ -0.24
TOP3A-211ENST00000581536 LTN1O94822 1766 aa13.58□□□□□ -0.24
TOP3A-211ENST00000581536 CCDC125Q86Z20 511 aa13.57□□□□□ -0.24
TOP3A-211ENST00000581536 TCP11L2Q8N4U5 519 aa13.57□□□□□ -0.24
TOP3A-211ENST00000581536 NFAT5O94916 1531 aa13.57□□□□□ -0.24
TOP3A-211ENST00000581536 EDC4Q6P2E9 1401 aaKnown RBP13.56□□□□□ -0.24
TOP3A-211ENST00000581536 BARGINQ6ZT62 677 aa13.56□□□□□ -0.24
TOP3A-211ENST00000581536 TOM1L2Q6ZVM7 507 aa13.56□□□□□ -0.24
TOP3A-211ENST00000581536 HSPA5P11021 654 aaKnown RBP13.55□□□□□ -0.24
TOP3A-211ENST00000581536 CHRM1P11229 460 aaPredicted RBP13.55□□□□□ -0.24
TOP3A-211ENST00000581536 USP54Q70EL1 1684 aa13.55□□□□□ -0.24
TOP3A-211ENST00000581536 FYB1O15117 783 aa13.54□□□□□ -0.24
TOP3A-211ENST00000581536 AMER1Q5JTC6 1135 aaPredicted RBP13.54□□□□□ -0.24
TOP3A-211ENST00000581536 POLR3GLQ9BT43 218 aa13.54□□□□□ -0.24
TOP3A-211ENST00000581536 CARD14Q9BXL6 1004 aa13.54□□□□□ -0.24
TOP3A-211ENST00000581536 BLMP54132 1417 aaPredicted RBP13.54□□□□□ -0.24
TOP3A-211ENST00000581536 CRB1P82279 1406 aa13.54□□□□□ -0.24
TOP3A-211ENST00000581536 PDE3BQ13370 1112 aa13.53□□□□□ -0.24
TOP3A-211ENST00000581536 GGNBP2Q9H3C7 697 aa13.53□□□□□ -0.24
TOP3A-211ENST00000581536 THRAP3Q9Y2W1 955 aaKnown RBP13.53□□□□□ -0.24
TOP3A-211ENST00000581536 WDR17Q8IZU2 1322 aa13.53□□□□□ -0.24
TOP3A-211ENST00000581536 C11orf95C9JLR9 678 aaPredicted RBP13.52□□□□□ -0.25
TOP3A-211ENST00000581536 TRIM37O94972 964 aa13.52□□□□□ -0.25
TOP3A-211ENST00000581536 CSB-PGBD3P0DP91 1061 aa13.52□□□□□ -0.25
TOP3A-211ENST00000581536 SF3B2Q13435 895 aaKnown RBP13.52□□□□□ -0.25
TOP3A-211ENST00000581536 PHF12Q96QT6 1004 aa13.52□□□□□ -0.25
TOP3A-211ENST00000581536 ANKRD36BQ8N2N9 1353 aa13.52□□□□□ -0.25
TOP3A-211ENST00000581536 RGPD2P0DJD1 1756 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms