RNA–Protein interactions for RNA: ENST00000578917.1

TRAF4-213, Transcript of TNF receptor associated factor 4, humanhuman

TSL 4

Gene TRAF4, Length 484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-213ENST00000578917 WDR17Q8IZU2 1322 aa9□□□□□ -0.97
TRAF4-213ENST00000578917 COL14A1Q05707 1796 aaKnown RBP8.99□□□□□ -0.97
TRAF4-213ENST00000578917 EXOC5O00471 708 aa8.99□□□□□ -0.97
TRAF4-213ENST00000578917 TNNT2P45379 298 aaPredicted RBP8.99□□□□□ -0.97
TRAF4-213ENST00000578917 DDB1Q16531 1140 aa8.99□□□□□ -0.97
TRAF4-213ENST00000578917 FAM196AQ6ZSG2 479 aa8.99□□□□□ -0.97
TRAF4-213ENST00000578917 IP6K1Q92551 441 aa8.99□□□□□ -0.97
TRAF4-213ENST00000578917 CDCA7Q9BWT1 371 aaPredicted RBP8.99□□□□□ -0.97
TRAF4-213ENST00000578917 CARD10Q9BWT7 1032 aa8.99□□□□□ -0.97
TRAF4-213ENST00000578917 CRB1P82279 1406 aa8.98□□□□□ -0.97
TRAF4-213ENST00000578917 CAMTA1Q9Y6Y1 1673 aa8.98□□□□□ -0.97
TRAF4-213ENST00000578917 C11orf95C9JLR9 678 aaPredicted RBP8.98□□□□□ -0.97
TRAF4-213ENST00000578917 RRS1Q15050 365 aaKnown RBP8.98□□□□□ -0.97
TRAF4-213ENST00000578917 MAP3K19Q56UN5 1328 aa8.98□□□□□ -0.97
TRAF4-213ENST00000578917 TRIM37O94972 964 aa8.97□□□□□ -0.97
TRAF4-213ENST00000578917 HOXC9P31274 260 aa8.97□□□□□ -0.97
TRAF4-213ENST00000578917 BAG6P46379 1132 aa8.97□□□□□ -0.97
TRAF4-213ENST00000578917 CNGB1Q14028 1251 aaPredicted RBP8.97□□□□□ -0.97
TRAF4-213ENST00000578917 MORC1Q86VD1 984 aa8.97□□□□□ -0.97
TRAF4-213ENST00000578917 MARF1Q9Y4F3 1742 aaKnown RBP8.97□□□□□ -0.97
TRAF4-213ENST00000578917 NSD3Q9BZ95 1437 aa8.97□□□□□ -0.97
TRAF4-213ENST00000578917 COL5A2P05997 1499 aaPredicted RBP8.96□□□□□ -0.97
TRAF4-213ENST00000578917 GLI3P10071 1580 aa8.96□□□□□ -0.97
TRAF4-213ENST00000578917 APBA3O96018 575 aa8.96□□□□□ -0.98
TRAF4-213ENST00000578917 ERBB3P21860 1342 aa8.96□□□□□ -0.98
TRAF4-213ENST00000578917 NWD2Q9ULI1 1742 aa8.96□□□□□ -0.98
TRAF4-213ENST00000578917 SLIT3O75094 1523 aa8.95□□□□□ -0.98
TRAF4-213ENST00000578917 NRKQ7Z2Y5 1582 aa8.95□□□□□ -0.98
TRAF4-213ENST00000578917 PIK3C2AO00443 1686 aa8.95□□□□□ -0.98
TRAF4-213ENST00000578917 PLCH1Q4KWH8 1693 aa8.95□□□□□ -0.98
TRAF4-213ENST00000578917 IL2RBP14784 551 aa8.95□□□□□ -0.98
TRAF4-213ENST00000578917 HSP90AB2PQ58FF8 381 aa8.95□□□□□ -0.98
TRAF4-213ENST00000578917 DEFB132Q7Z7B7 95 aa8.95□□□□□ -0.98
TRAF4-213ENST00000578917 KIF7Q2M1P5 1343 aa8.95□□□□□ -0.98
TRAF4-213ENST00000578917 CCDC7Q96M83 1385 aa8.95□□□□□ -0.98
TRAF4-213ENST00000578917 BLMP54132 1417 aaPredicted RBP8.95□□□□□ -0.98
TRAF4-213ENST00000578917 ABCA3Q99758 1704 aa8.94□□□□□ -0.98
TRAF4-213ENST00000578917 EP400Q96L91 3159 aa8.94□□□□□ -0.98
TRAF4-213ENST00000578917 DDX54Q8TDD1 881 aaKnown RBP8.94□□□□□ -0.98
TRAF4-213ENST00000578917 RAPGEF4Q8WZA2 1011 aa8.94□□□□□ -0.98
TRAF4-213ENST00000578917 OVOS2A0A0J9YW53 1432 aa8.94□□□□□ -0.98
TRAF4-213ENST00000578917 OVOS2Q6IE36 1432 aa8.94□□□□□ -0.98
TRAF4-213ENST00000578917 PHRF1Q9P1Y6 1649 aaKnown RBP8.94□□□□□ -0.98
TRAF4-213ENST00000578917 TNKS1BP1Q9C0C2 1729 aaKnown RBP8.94□□□□□ -0.98
TRAF4-213ENST00000578917 EN1Q05925 392 aaPredicted RBP8.93□□□□□ -0.98
TRAF4-213ENST00000578917 EMILIN1Q9Y6C2 1016 aa8.93□□□□□ -0.98
TRAF4-213ENST00000578917 SMG6Q86US8 1419 aaKnown RBP8.93□□□□□ -0.98
TRAF4-213ENST00000578917 AKAP12Q02952 1782 aa8.92□□□□□ -0.98
TRAF4-213ENST00000578917 NBPF6Q5VWK0 638 aa8.92□□□□□ -0.98
TRAF4-213ENST00000578917 USHBP1Q8N6Y0 703 aa8.92□□□□□ -0.98
TRAF4-213ENST00000578917 MARCH10Q8NA82 808 aaPredicted RBP8.92□□□□□ -0.98
TRAF4-213ENST00000578917 NBPF4Q96M43 638 aa8.92□□□□□ -0.98
TRAF4-213ENST00000578917 NFAT5O94916 1531 aa8.91□□□□□ -0.98
TRAF4-213ENST00000578917 FLT4P35916 1363 aa8.91□□□□□ -0.98
TRAF4-213ENST00000578917 TATP17735 454 aaPredicted RBP8.91□□□□□ -0.98
TRAF4-213ENST00000578917 CC2D1BQ5T0F9 858 aaKnown RBP8.91□□□□□ -0.98
TRAF4-213ENST00000578917 ZCRB1Q8TBF4 217 aaKnown RBP8.91□□□□□ -0.98
TRAF4-213ENST00000578917 POLKQ9UBT6 870 aa8.91□□□□□ -0.98
TRAF4-213ENST00000578917 MON2Q7Z3U7 1717 aa8.91□□□□□ -0.98
TRAF4-213ENST00000578917 CRYBG1Q9Y4K1 1723 aa8.91□□□□□ -0.98
TRAF4-213ENST00000578917 RTL1A6NKG5 1358 aa8.9□□□□□ -0.98
TRAF4-213ENST00000578917 SYTL4Q96C24 671 aaPredicted RBP8.9□□□□□ -0.98
TRAF4-213ENST00000578917 ACSBG1Q96GR2 724 aa8.9□□□□□ -0.98
TRAF4-213ENST00000578917 BCL11BQ9C0K0 894 aaPredicted RBP8.9□□□□□ -0.98
TRAF4-213ENST00000578917 INSRP06213 1382 aa8.89□□□□□ -0.99
TRAF4-213ENST00000578917 NRAPQ86VF7 1730 aa8.89□□□□□ -0.99
TRAF4-213ENST00000578917 WASHC2AQ641Q2 1341 aa8.89□□□□□ -0.99
TRAF4-213ENST00000578917 LMO7Q8WWI1 1683 aa8.89□□□□□ -0.99
TRAF4-213ENST00000578917 EZH2Q15910 746 aaKnown RBP8.89□□□□□ -0.99
TRAF4-213ENST00000578917 NBPF14Q5TI25 921 aa8.89□□□□□ -0.99
TRAF4-213ENST00000578917 OVOS2A0A0G2JMS6 1433 aa8.88□□□□□ -0.99
TRAF4-213ENST00000578917 NSD2O96028 1365 aa8.88□□□□□ -0.99
TRAF4-213ENST00000578917 KIF24Q5T7B8 1368 aa8.88□□□□□ -0.99
TRAF4-213ENST00000578917 KCNQ2O43526 872 aa8.87□□□□□ -0.99
TRAF4-213ENST00000578917 ZEB1P37275 1124 aaPredicted RBP8.87□□□□□ -0.99
TRAF4-213ENST00000578917 AMER1Q5JTC6 1135 aaPredicted RBP8.87□□□□□ -0.99
TRAF4-213ENST00000578917 CAMKK2Q96RR4 588 aa8.87□□□□□ -0.99
TRAF4-213ENST00000578917 EYA1Q99502 592 aa8.87□□□□□ -0.99
TRAF4-213ENST00000578917 SPG7Q9UQ90 795 aa8.87□□□□□ -0.99
TRAF4-213ENST00000578917 ABCC6O95255 1503 aa8.86□□□□□ -0.99
TRAF4-213ENST00000578917 PSDA5PKW4 1024 aaPredicted RBP8.86□□□□□ -0.99
TRAF4-213ENST00000578917 PER1O15534 1290 aaPredicted RBP8.86□□□□□ -0.99
TRAF4-213ENST00000578917 PRIM1P49642 420 aaKnown RBP8.86□□□□□ -0.99
TRAF4-213ENST00000578917 MTHFSP49914 203 aa8.86□□□□□ -0.99
TRAF4-213ENST00000578917 EIF4A2Q14240 407 aaKnown RBP8.86□□□□□ -0.99
TRAF4-213ENST00000578917 PTF1AQ7RTS3 328 aa8.86□□□□□ -0.99
TRAF4-213ENST00000578917 SRCAPQ6ZRS2 3230 aa8.86□□□□□ -0.99
TRAF4-213ENST00000578917 PLSCR1O15162 318 aa8.85□□□□□ -0.99
TRAF4-213ENST00000578917 R3HDM1Q15032 1099 aaKnown RBP8.85□□□□□ -0.99
TRAF4-213ENST00000578917 COL18A1P39060 1754 aa8.85□□□□□ -0.99
TRAF4-213ENST00000578917 DISP2A7MBM2 1401 aa8.85□□□□□ -0.99
TRAF4-213ENST00000578917 THSD7AQ9UPZ6 1657 aa8.85□□□□□ -0.99
TRAF4-213ENST00000578917 PLEKHO1Q53GL0 409 aaPredicted RBP8.84□□□□□ -0.99
TRAF4-213ENST00000578917 CFAP53Q96M91 514 aa8.84□□□□□ -0.99
TRAF4-213ENST00000578917 BRWD3Q6RI45 1802 aa8.84□□□□□ -0.99
TRAF4-213ENST00000578917 PARD3Q8TEW0 1356 aa8.84□□□□□ -0.99
TRAF4-213ENST00000578917 PCDH11XQ9BZA7 1347 aa8.83□□□□□ -1
TRAF4-213ENST00000578917 PCDH11YQ9BZA8 1340 aa8.83□□□□□ -1
TRAF4-213ENST00000578917 TNS2Q63HR2 1409 aa8.83□□□□□ -1
TRAF4-213ENST00000578917 DIAPH1O60610 1272 aaKnown RBP8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms