RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 NINLQ9Y2I6 1382 aa14.16□□□□□ -0.14
SS18-207ENST00000577636 NRKQ7Z2Y5 1582 aa14.16□□□□□ -0.14
SS18-207ENST00000577636 CENPJQ9HC77 1338 aaPredicted RBP14.15□□□□□ -0.14
SS18-207ENST00000577636 RREB1Q92766 1687 aa14.15□□□□□ -0.14
SS18-207ENST00000577636 PROM2Q8N271 834 aa14.15□□□□□ -0.14
SS18-207ENST00000577636 MARCH10Q8NA82 808 aaPredicted RBP14.15□□□□□ -0.14
SS18-207ENST00000577636 AXIN2Q9Y2T1 843 aa14.15□□□□□ -0.14
SS18-207ENST00000577636 EIF4G2P78344 907 aaKnown RBP eCLIP14.14□□□□□ -0.15
SS18-207ENST00000577636 STK32BQ9NY57 414 aa14.14□□□□□ -0.15
SS18-207ENST00000577636 LMO7Q8WWI1 1683 aa14.13□□□□□ -0.15
SS18-207ENST00000577636 AATKQ6ZMQ8 1374 aa14.12□□□□□ -0.15
SS18-207ENST00000577636 EXOC5O00471 708 aa14.12□□□□□ -0.15
SS18-207ENST00000577636 TXNRD1Q16881 649 aa14.11□□□□□ -0.15
SS18-207ENST00000577636 WDR17Q8IZU2 1322 aa14.11□□□□□ -0.15
SS18-207ENST00000577636 PTGER2P43116 358 aa14.1□□□□□ -0.15
SS18-207ENST00000577636 SLC15A2Q16348 729 aa14.1□□□□□ -0.15
SS18-207ENST00000577636 ACSBG1Q96GR2 724 aa14.1□□□□□ -0.15
SS18-207ENST00000577636 CDCA7Q9BWT1 371 aaPredicted RBP14.1□□□□□ -0.15
SS18-207ENST00000577636 FHDC1Q9C0D6 1143 aaPredicted RBP14.1□□□□□ -0.15
SS18-207ENST00000577636 TOPAZ1Q8N9V7 1692 aa14.1□□□□□ -0.15
SS18-207ENST00000577636 USP6P35125 1406 aa14.09□□□□□ -0.15
SS18-207ENST00000577636 ZNF784Q8NCA9 323 aaPredicted RBP14.09□□□□□ -0.15
SS18-207ENST00000577636 CARD10Q9BWT7 1032 aa14.09□□□□□ -0.15
SS18-207ENST00000577636 PARP4Q9UKK3 1724 aaKnown RBP14.09□□□□□ -0.15
SS18-207ENST00000577636 BRD4O60885 1362 aaPredicted RBP14.09□□□□□ -0.15
SS18-207ENST00000577636 ARHGEF25Q86VW2 580 aa14.08□□□□□ -0.16
SS18-207ENST00000577636 KCNH5Q8NCM2 988 aa14.08□□□□□ -0.16
SS18-207ENST00000577636 SYT17Q9BSW7 474 aa14.08□□□□□ -0.16
SS18-207ENST00000577636 TTC21BQ7Z4L5 1316 aa14.07□□□□□ -0.16
SS18-207ENST00000577636 EVC2Q86UK5 1308 aa14.07□□□□□ -0.16
SS18-207ENST00000577636 HSPA5P11021 654 aaKnown RBP14.06□□□□□ -0.16
SS18-207ENST00000577636 ZNF692Q9BU19 519 aaPredicted RBP14.06□□□□□ -0.16
SS18-207ENST00000577636 PEAK1Q9H792 1746 aa14.05□□□□□ -0.16
SS18-207ENST00000577636 SENP3-EIF4A1A0A087X0R7 540 aa14.05□□□□□ -0.16
SS18-207ENST00000577636 KLHL34Q8N239 644 aa14.05□□□□□ -0.16
SS18-207ENST00000577636 MTFR1LQ9H019 292 aa14.05□□□□□ -0.16
SS18-207ENST00000577636 LRRC37A3O60309 1634 aa14.04□□□□□ -0.16
SS18-207ENST00000577636 ARXQ96QS3 562 aa14.04□□□□□ -0.16
SS18-207ENST00000577636 CARD11Q9BXL7 1154 aa14.04□□□□□ -0.16
SS18-207ENST00000577636 NLRP2Q9NX02 1062 aa14.04□□□□□ -0.16
SS18-207ENST00000577636 CPSF1Q10570 1443 aaKnown RBP14.04□□□□□ -0.16
SS18-207ENST00000577636 SLIT3O75094 1523 aa14.04□□□□□ -0.16
SS18-207ENST00000577636 SBF2Q86WG5 1849 aa14.04□□□□□ -0.16
SS18-207ENST00000577636 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.03□□□□□ -0.16
SS18-207ENST00000577636 ROCK2O75116 1388 aaKnown RBP14.02□□□□□ -0.17
SS18-207ENST00000577636 GPR162Q16538 588 aa14.02□□□□□ -0.17
SS18-207ENST00000577636 PELP1Q8IZL8 1130 aaKnown RBP14.02□□□□□ -0.17
SS18-207ENST00000577636 CASZ1Q86V15 1759 aa14.01□□□□□ -0.17
SS18-207ENST00000577636 TTC21AQ8NDW8 1320 aa14.01□□□□□ -0.17
SS18-207ENST00000577636 KIAA1210Q9ULL0 1709 aa14.01□□□□□ -0.17
SS18-207ENST00000577636 MYOM1P52179 1685 aa14.01□□□□□ -0.17
SS18-207ENST00000577636 BCL9O00512 1426 aa14□□□□□ -0.17
SS18-207ENST00000577636 USP47Q96K76 1375 aa14□□□□□ -0.17
SS18-207ENST00000577636 CCDC7Q96M83 1385 aa14□□□□□ -0.17
SS18-207ENST00000577636 C1QTNF8P60827 252 aa14□□□□□ -0.17
SS18-207ENST00000577636 SGIP1Q9BQI5 828 aa14□□□□□ -0.17
SS18-207ENST00000577636 COL18A1P39060 1754 aa14□□□□□ -0.17
SS18-207ENST00000577636 KTN1Q86UP2 1357 aaKnown RBP13.99□□□□□ -0.17
SS18-207ENST00000577636 IL2RBP14784 551 aa13.99□□□□□ -0.17
SS18-207ENST00000577636 DDX10Q13206 875 aaKnown RBP13.99□□□□□ -0.17
SS18-207ENST00000577636 PIK3C2AO00443 1686 aa13.98□□□□□ -0.17
SS18-207ENST00000577636 QRICH2Q9H0J4 1663 aa13.98□□□□□ -0.17
SS18-207ENST00000577636 ZNF827Q17R98 1081 aa13.98□□□□□ -0.17
SS18-207ENST00000577636 DDX54Q8TDD1 881 aaKnown RBP13.98□□□□□ -0.17
SS18-207ENST00000577636 TMC1Q8TDI8 760 aa13.98□□□□□ -0.17
SS18-207ENST00000577636 RGPD3A6NKT7 1758 aaPredicted RBP13.98□□□□□ -0.17
SS18-207ENST00000577636 RGPD4Q7Z3J3 1758 aa13.98□□□□□ -0.17
SS18-207ENST00000577636 RGPD5Q99666 1765 aa13.97□□□□□ -0.17
SS18-207ENST00000577636 NME9Q86XW9 330 aa13.97□□□□□ -0.17
SS18-207ENST00000577636 ANKRD24Q8TF21 1146 aa13.97□□□□□ -0.17
SS18-207ENST00000577636 LTV1Q96GA3 475 aaPredicted RBP13.97□□□□□ -0.17
SS18-207ENST00000577636 LRRC4BQ9NT99 713 aa13.97□□□□□ -0.17
SS18-207ENST00000577636 AKAP12Q02952 1782 aa13.96□□□□□ -0.17
SS18-207ENST00000577636 KCNQ4P56696 695 aa13.96□□□□□ -0.17
SS18-207ENST00000577636 MIER1Q8N108 512 aa13.96□□□□□ -0.17
SS18-207ENST00000577636 TNS2Q63HR2 1409 aa13.96□□□□□ -0.18
SS18-207ENST00000577636 POLD1P28340 1107 aa13.95□□□□□ -0.18
SS18-207ENST00000577636 SYTL4Q96C24 671 aaPredicted RBP13.95□□□□□ -0.18
SS18-207ENST00000577636 UTRNP46939 3433 aa13.95□□□□□ -0.18
SS18-207ENST00000577636 KAT6BQ8WYB5 2073 aa13.95□□□□□ -0.18
SS18-207ENST00000577636 ERBB3P21860 1342 aa13.94□□□□□ -0.18
SS18-207ENST00000577636 TFCP2L1Q9NZI6 479 aa13.94□□□□□ -0.18
SS18-207ENST00000577636 WNK3Q9BYP7 1800 aa13.93□□□□□ -0.18
SS18-207ENST00000577636 MSH5O43196 834 aa13.93□□□□□ -0.18
SS18-207ENST00000577636 GIGYF1O75420 1035 aaPredicted RBP13.93□□□□□ -0.18
SS18-207ENST00000577636 HDGFL2Q7Z4V5 671 aaPredicted RBP13.93□□□□□ -0.18
SS18-207ENST00000577636 ANP32CO43423 234 aa13.92□□□□□ -0.18
SS18-207ENST00000577636 AKT1S1Q96B36 256 aa13.92□□□□□ -0.18
SS18-207ENST00000577636 SLC12A5Q9H2X9 1139 aa13.92□□□□□ -0.18
SS18-207ENST00000577636 TRPM1Q7Z4N2 1603 aa13.92□□□□□ -0.18
SS18-207ENST00000577636 WASHC2AQ641Q2 1341 aa13.91□□□□□ -0.18
SS18-207ENST00000577636 NFAT5O94916 1531 aa13.91□□□□□ -0.18
SS18-207ENST00000577636 PRIM1P49642 420 aaKnown RBP13.91□□□□□ -0.18
SS18-207ENST00000577636 SLC16A10Q8TF71 515 aa13.91□□□□□ -0.18
SS18-207ENST00000577636 SLC27A3Q5K4L6 730 aa13.9□□□□□ -0.18
SS18-207ENST00000577636 NLGN2Q8NFZ4 835 aa13.9□□□□□ -0.18
SS18-207ENST00000577636 PNPLA7Q6ZV29 1317 aa13.9□□□□□ -0.19
SS18-207ENST00000577636 USP31Q70CQ4 1352 aa13.89□□□□□ -0.19
SS18-207ENST00000577636 SLC24A1O60721 1099 aa13.89□□□□□ -0.19
SS18-207ENST00000577636 MAP3K5Q99683 1374 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms