RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 RXRBP28702 533 aa8.77□□□□□ -1.01
VPS53-219ENST00000576019 C1QTNF8P60827 252 aa8.77□□□□□ -1.01
VPS53-219ENST00000576019 CTDSPL2Q05D32 466 aa8.77□□□□□ -1.01
VPS53-219ENST00000576019 TXNDC2Q86VQ3 553 aa8.77□□□□□ -1.01
VPS53-219ENST00000576019 SULF1Q8IWU6 871 aa8.77□□□□□ -1.01
VPS53-219ENST00000576019 FAM177A1Q8N128 213 aaPredicted RBP8.77□□□□□ -1.01
VPS53-219ENST00000576019 ZBTB3Q9H5J0 574 aa8.77□□□□□ -1.01
VPS53-219ENST00000576019 DISP1Q96F81 1524 aa8.76□□□□□ -1.01
VPS53-219ENST00000576019 ZNF142P52746 1687 aaPredicted RBP8.76□□□□□ -1.01
VPS53-219ENST00000576019 ST18O60284 1047 aa8.76□□□□□ -1.01
VPS53-219ENST00000576019 PRPF38BQ5VTL8 546 aaKnown RBP8.76□□□□□ -1.01
VPS53-219ENST00000576019 TBC1D9Q6ZT07 1266 aa8.76□□□□□ -1.01
VPS53-219ENST00000576019 VWDEQ8N2E2 1590 aa8.76□□□□□ -1.01
VPS53-219ENST00000576019 PRSS12P56730 875 aa8.75□□□□□ -1.01
VPS53-219ENST00000576019 DOK7Q18PE1 504 aa8.75□□□□□ -1.01
VPS53-219ENST00000576019 CCER1Q8TC90 406 aaPredicted RBP8.75□□□□□ -1.01
VPS53-219ENST00000576019 LRRN4Q8WUT4 740 aa8.75□□□□□ -1.01
VPS53-219ENST00000576019 TSC1Q92574 1164 aa8.75□□□□□ -1.01
VPS53-219ENST00000576019 EP400Q96L91 3159 aa8.74□□□□□ -1.01
VPS53-219ENST00000576019 RGS12O14924 1447 aa8.74□□□□□ -1.01
VPS53-219ENST00000576019 TMEM164Q5U3C3 297 aa8.74□□□□□ -1.01
VPS53-219ENST00000576019 DNAJC14Q6Y2X3 702 aaPredicted RBP8.74□□□□□ -1.01
VPS53-219ENST00000576019 STK32AQ8WU08 396 aa8.74□□□□□ -1.01
VPS53-219ENST00000576019 CDCA7LQ96GN5 454 aa8.74□□□□□ -1.01
VPS53-219ENST00000576019 ZMIZ1Q9ULJ6 1067 aa8.74□□□□□ -1.01
VPS53-219ENST00000576019 NPATQ14207 1427 aa8.73□□□□□ -1.01
VPS53-219ENST00000576019 C9orf84Q5VXU9 1444 aa8.73□□□□□ -1.01
VPS53-219ENST00000576019 EPS8L1Q8TE68 723 aa8.73□□□□□ -1.01
VPS53-219ENST00000576019 FAM135BQ49AJ0 1406 aa8.72□□□□□ -1.01
VPS53-219ENST00000576019 ATP10AO60312 1499 aa8.72□□□□□ -1.01
VPS53-219ENST00000576019 SUPT6HQ7KZ85 1726 aaKnown RBP8.72□□□□□ -1.01
VPS53-219ENST00000576019 SOX11P35716 441 aa8.72□□□□□ -1.01
VPS53-219ENST00000576019 SEMA3FQ13275 785 aa8.72□□□□□ -1.01
VPS53-219ENST00000576019 FAM198AQ9UFP1 575 aa8.72□□□□□ -1.01
VPS53-219ENST00000576019 SYNMO15061 1565 aa8.71□□□□□ -1.02
VPS53-219ENST00000576019 NEURL4Q96JN8 1562 aa8.71□□□□□ -1.02
VPS53-219ENST00000576019 ATP9BO43861 1147 aa8.71□□□□□ -1.02
VPS53-219ENST00000576019 ZNF16P17020 682 aaPredicted RBP8.71□□□□□ -1.02
VPS53-219ENST00000576019 FOSBP53539 338 aa8.71□□□□□ -1.02
VPS53-219ENST00000576019 PHLDB3Q6NSJ2 640 aa8.71□□□□□ -1.02
VPS53-219ENST00000576019 RDH13Q8NBN7 331 aa8.71□□□□□ -1.02
VPS53-219ENST00000576019 EYA1Q99502 592 aa8.71□□□□□ -1.02
VPS53-219ENST00000576019 PCDHGA4Q9Y5G9 962 aa8.71□□□□□ -1.02
VPS53-219ENST00000576019 LRP6O75581 1613 aa8.71□□□□□ -1.02
VPS53-219ENST00000576019 HECW1Q76N89 1606 aa8.71□□□□□ -1.02
VPS53-219ENST00000576019 ATAD2Q6PL18 1390 aa8.71□□□□□ -1.02
VPS53-219ENST00000576019 RIMBP2O15034 1052 aa8.7□□□□□ -1.02
VPS53-219ENST00000576019 KDM4AO75164 1064 aa8.7□□□□□ -1.02
VPS53-219ENST00000576019 FDX1P10109 184 aa8.7□□□□□ -1.02
VPS53-219ENST00000576019 GUCA2AQ02747 115 aa8.7□□□□□ -1.02
VPS53-219ENST00000576019 NOM1Q5C9Z4 860 aaKnown RBP8.7□□□□□ -1.02
VPS53-219ENST00000576019 POTEGQ6S5H5 508 aa8.7□□□□□ -1.02
VPS53-219ENST00000576019 HELBQ8NG08 1087 aaPredicted RBP8.7□□□□□ -1.02
VPS53-219ENST00000576019 ZDHHC16Q969W1 377 aa8.7□□□□□ -1.02
VPS53-219ENST00000576019 BCL2L13Q9BXK5 485 aa8.7□□□□□ -1.02
VPS53-219ENST00000576019 ZSWIM6Q9HCJ5 1215 aa8.7□□□□□ -1.02
VPS53-219ENST00000576019 CEP170BQ9Y4F5 1589 aaPredicted RBP8.69□□□□□ -1.02
VPS53-219ENST00000576019 POTEMA6NI47 508 aa8.69□□□□□ -1.02
VPS53-219ENST00000576019 HOXA2O43364 376 aa8.69□□□□□ -1.02
VPS53-219ENST00000576019 ZNF454Q8N9F8 522 aa8.69□□□□□ -1.02
VPS53-219ENST00000576019 ZNF784Q8NCA9 323 aaPredicted RBP8.69□□□□□ -1.02
VPS53-219ENST00000576019 ADAM33Q9BZ11 813 aa8.69□□□□□ -1.02
VPS53-219ENST00000576019 PCDHGC3Q9UN70 934 aa8.69□□□□□ -1.02
VPS53-219ENST00000576019 NOVA2Q9UNW9 492 aaKnown RBP8.69□□□□□ -1.02
VPS53-219ENST00000576019 CDK13Q14004 1512 aaKnown RBP8.69□□□□□ -1.02
VPS53-219ENST00000576019 MYO3AQ8NEV4 1616 aa8.69□□□□□ -1.02
VPS53-219ENST00000576019 HOXB1P14653 301 aaPredicted RBP8.68□□□□□ -1.02
VPS53-219ENST00000576019 TCF3P15923 654 aa8.68□□□□□ -1.02
VPS53-219ENST00000576019 ERCC3P19447 782 aa8.68□□□□□ -1.02
VPS53-219ENST00000576019 KANK4Q5T7N3 995 aaPredicted RBP8.68□□□□□ -1.02
VPS53-219ENST00000576019 GIPC2Q8TF65 315 aa8.68□□□□□ -1.02
VPS53-219ENST00000576019 HLA-CQ95604 372 aa8.68□□□□□ -1.02
VPS53-219ENST00000576019 IQGAP2Q13576 1575 aa8.68□□□□□ -1.02
VPS53-219ENST00000576019 POLR1AO95602 1720 aaPredicted RBP8.68□□□□□ -1.02
VPS53-219ENST00000576019 ABCA8O94911 1581 aa8.67□□□□□ -1.02
VPS53-219ENST00000576019 DNAJB2P25686 324 aa8.67□□□□□ -1.02
VPS53-219ENST00000576019 ELOAQ14241 798 aaKnown RBP8.67□□□□□ -1.02
VPS53-219ENST00000576019 JCADQ9P266 1359 aa8.67□□□□□ -1.02
VPS53-219ENST00000576019 STRCP1A6NGW2 1772 aa8.66□□□□□ -1.02
VPS53-219ENST00000576019 C3orf80F5H4A9 247 aa8.66□□□□□ -1.02
VPS53-219ENST00000576019 SIRT1Q96EB6 747 aa8.66□□□□□ -1.02
VPS53-219ENST00000576019 SOWAHDA6NJG2 315 aa8.65□□□□□ -1.02
VPS53-219ENST00000576019 CFAP99D6REC4 459 aa8.65□□□□□ -1.02
VPS53-219ENST00000576019 PIK3CDO00329 1044 aa8.65□□□□□ -1.02
VPS53-219ENST00000576019 SERPINB4P48594 390 aa8.65□□□□□ -1.02
VPS53-219ENST00000576019 MTMR2Q13614 643 aa8.65□□□□□ -1.02
VPS53-219ENST00000576019 GPR153Q6NV75 609 aa8.65□□□□□ -1.02
VPS53-219ENST00000576019 NUDT18Q6ZVK8 323 aa8.65□□□□□ -1.02
VPS53-219ENST00000576019 CCDC125Q86Z20 511 aa8.65□□□□□ -1.02
VPS53-219ENST00000576019 TMEM134Q9H6X4 195 aa8.65□□□□□ -1.02
VPS53-219ENST00000576019 AGLP35573 1532 aa8.64□□□□□ -1.03
VPS53-219ENST00000576019 BCL9LQ86UU0 1499 aa8.64□□□□□ -1.03
VPS53-219ENST00000576019 ARID4AP29374 1257 aaPredicted RBP8.64□□□□□ -1.03
VPS53-219ENST00000576019 NR6A1Q15406 480 aa8.64□□□□□ -1.03
VPS53-219ENST00000576019 MARVELD3Q96A59 401 aa8.64□□□□□ -1.03
VPS53-219ENST00000576019 SLAIN2Q9P270 581 aa8.64□□□□□ -1.03
VPS53-219ENST00000576019 CFAP74Q9C0B2 1584 aa8.64□□□□□ -1.03
VPS53-219ENST00000576019 ROBO1Q9Y6N7 1651 aa8.63□□□□□ -1.03
VPS53-219ENST00000576019 SSFA2P28290 1259 aa8.63□□□□□ -1.03
VPS53-219ENST00000576019 MARSP56192 900 aaKnown RBP8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms