RNA–Protein interactions for RNA: ENST00000575454.1

SMG6-218, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 652 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-218ENST00000575454 ARHGEF25Q86VW2 580 aa12.99□□□□□ -0.33
SMG6-218ENST00000575454 MTFR1LQ9H019 292 aa12.99□□□□□ -0.33
SMG6-218ENST00000575454 USP6P35125 1406 aa12.98□□□□□ -0.33
SMG6-218ENST00000575454 ZNF784Q8NCA9 323 aaPredicted RBP12.98□□□□□ -0.33
SMG6-218ENST00000575454 SYT17Q9BSW7 474 aa12.98□□□□□ -0.33
SMG6-218ENST00000575454 ATF5Q9Y2D1 282 aaPredicted RBP12.98□□□□□ -0.33
SMG6-218ENST00000575454 AXIN2Q9Y2T1 843 aa12.98□□□□□ -0.33
SMG6-218ENST00000575454 PHRF1Q9P1Y6 1649 aaKnown RBP12.98□□□□□ -0.33
SMG6-218ENST00000575454 EVC2Q86UK5 1308 aa12.97□□□□□ -0.33
SMG6-218ENST00000575454 PTF1AQ7RTS3 328 aa12.97□□□□□ -0.33
SMG6-218ENST00000575454 LMO7Q8WWI1 1683 aa12.96□□□□□ -0.33
SMG6-218ENST00000575454 FHDC1Q9C0D6 1143 aaPredicted RBP12.96□□□□□ -0.33
SMG6-218ENST00000575454 PDGFDQ9GZP0 370 aaPredicted RBP12.96□□□□□ -0.33
SMG6-218ENST00000575454 ITSN1Q15811 1721 aa12.96□□□□□ -0.34
SMG6-218ENST00000575454 NUP188Q5SRE5 1749 aa12.96□□□□□ -0.34
SMG6-218ENST00000575454 RREB1Q92766 1687 aa12.96□□□□□ -0.34
SMG6-218ENST00000575454 CCDC7Q96M83 1385 aa12.95□□□□□ -0.34
SMG6-218ENST00000575454 TTC21AQ8NDW8 1320 aa12.95□□□□□ -0.34
SMG6-218ENST00000575454 TTC21BQ7Z4L5 1316 aa12.94□□□□□ -0.34
SMG6-218ENST00000575454 ARXQ96QS3 562 aa12.94□□□□□ -0.34
SMG6-218ENST00000575454 CPSF1Q10570 1443 aaKnown RBP12.94□□□□□ -0.34
SMG6-218ENST00000575454 IFFO2Q5TF58 517 aa12.93□□□□□ -0.34
SMG6-218ENST00000575454 SLIT3O75094 1523 aa12.93□□□□□ -0.34
SMG6-218ENST00000575454 GOLGB1Q14789 3259 aaKnown RBP12.92□□□□□ -0.34
SMG6-218ENST00000575454 SOX12O15370 315 aa12.92□□□□□ -0.34
SMG6-218ENST00000575454 ARHGEF28Q8N1W1 1705 aaKnown RBP12.92□□□□□ -0.34
SMG6-218ENST00000575454 SGIP1Q9BQI5 828 aa12.92□□□□□ -0.34
SMG6-218ENST00000575454 PARP4Q9UKK3 1724 aaKnown RBP12.91□□□□□ -0.34
SMG6-218ENST00000575454 C1QTNF8P60827 252 aa12.91□□□□□ -0.34
SMG6-218ENST00000575454 TOPAZ1Q8N9V7 1692 aa12.91□□□□□ -0.34
SMG6-218ENST00000575454 SENP3-EIF4A1A0A087X0R7 540 aa12.9□□□□□ -0.34
SMG6-218ENST00000575454 MAP3K5Q99683 1374 aa12.9□□□□□ -0.34
SMG6-218ENST00000575454 PEAK1Q9H792 1746 aa12.89□□□□□ -0.35
SMG6-218ENST00000575454 IL2RBP14784 551 aa12.89□□□□□ -0.35
SMG6-218ENST00000575454 GPR162Q16538 588 aa12.89□□□□□ -0.35
SMG6-218ENST00000575454 SLC16A10Q8TF71 515 aa12.89□□□□□ -0.35
SMG6-218ENST00000575454 NLRP2Q9NX02 1062 aa12.89□□□□□ -0.35
SMG6-218ENST00000575454 POLD1P28340 1107 aa12.88□□□□□ -0.35
SMG6-218ENST00000575454 SLC27A3Q5K4L6 730 aa12.88□□□□□ -0.35
SMG6-218ENST00000575454 ACSBG1Q96GR2 724 aa12.88□□□□□ -0.35
SMG6-218ENST00000575454 TNS2Q63HR2 1409 aa12.88□□□□□ -0.35
SMG6-218ENST00000575454 RGPD3A6NKT7 1758 aaPredicted RBP12.87□□□□□ -0.35
SMG6-218ENST00000575454 RGPD4Q7Z3J3 1758 aa12.87□□□□□ -0.35
SMG6-218ENST00000575454 KTN1Q86UP2 1357 aaKnown RBP12.87□□□□□ -0.35
SMG6-218ENST00000575454 ERBB3P21860 1342 aa12.87□□□□□ -0.35
SMG6-218ENST00000575454 L3MBTL2Q969R5 705 aa12.86□□□□□ -0.35
SMG6-218ENST00000575454 LRRC37A3O60309 1634 aa12.86□□□□□ -0.35
SMG6-218ENST00000575454 KIAA1210Q9ULL0 1709 aa12.85□□□□□ -0.35
SMG6-218ENST00000575454 USP31Q70CQ4 1352 aa12.85□□□□□ -0.35
SMG6-218ENST00000575454 GIGYF1O75420 1035 aaPredicted RBP12.85□□□□□ -0.35
SMG6-218ENST00000575454 ROCK2O75116 1388 aaKnown RBP12.84□□□□□ -0.35
SMG6-218ENST00000575454 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.84□□□□□ -0.35
SMG6-218ENST00000575454 ANKRD24Q8TF21 1146 aa12.84□□□□□ -0.35
SMG6-218ENST00000575454 MYOM1P52179 1685 aa12.83□□□□□ -0.35
SMG6-218ENST00000575454 ABCC6O95255 1503 aa12.83□□□□□ -0.35
SMG6-218ENST00000575454 HMGB2P26583 209 aaKnown RBP12.83□□□□□ -0.36
SMG6-218ENST00000575454 ZNF827Q17R98 1081 aa12.83□□□□□ -0.36
SMG6-218ENST00000575454 HDGFL2Q7Z4V5 671 aaPredicted RBP12.83□□□□□ -0.36
SMG6-218ENST00000575454 AKT1S1Q96B36 256 aa12.83□□□□□ -0.36
SMG6-218ENST00000575454 LRRC4BQ9NT99 713 aa12.83□□□□□ -0.36
SMG6-218ENST00000575454 TFCP2L1Q9NZI6 479 aa12.83□□□□□ -0.36
SMG6-218ENST00000575454 CASZ1Q86V15 1759 aa12.83□□□□□ -0.36
SMG6-218ENST00000575454 GRIN3BO60391 1043 aa12.82□□□□□ -0.36
SMG6-218ENST00000575454 PELP1Q8IZL8 1130 aaKnown RBP12.81□□□□□ -0.36
SMG6-218ENST00000575454 KLHL34Q8N239 644 aa12.81□□□□□ -0.36
SMG6-218ENST00000575454 DDX54Q8TDD1 881 aaKnown RBP12.81□□□□□ -0.36
SMG6-218ENST00000575454 NFAT5O94916 1531 aa12.8□□□□□ -0.36
SMG6-218ENST00000575454 NME9Q86XW9 330 aa12.8□□□□□ -0.36
SMG6-218ENST00000575454 TMC1Q8TDI8 760 aa12.8□□□□□ -0.36
SMG6-218ENST00000575454 TERF2IPQ9NYB0 399 aa12.8□□□□□ -0.36
SMG6-218ENST00000575454 IP6K1Q92551 441 aa12.79□□□□□ -0.36
SMG6-218ENST00000575454 PNPLA7Q6ZV29 1317 aa12.79□□□□□ -0.36
SMG6-218ENST00000575454 PIK3C2AO00443 1686 aa12.79□□□□□ -0.36
SMG6-218ENST00000575454 SBNO2Q9Y2G9 1366 aa12.79□□□□□ -0.36
SMG6-218ENST00000575454 COL18A1P39060 1754 aa12.79□□□□□ -0.36
SMG6-218ENST00000575454 TRPM1Q7Z4N2 1603 aa12.78□□□□□ -0.36
SMG6-218ENST00000575454 SYTL4Q96C24 671 aaPredicted RBP12.78□□□□□ -0.36
SMG6-218ENST00000575454 PUS7Q96PZ0 661 aaKnown RBP12.78□□□□□ -0.36
SMG6-218ENST00000575454 PRIM1P49642 420 aaKnown RBP12.77□□□□□ -0.37
SMG6-218ENST00000575454 CHD4Q14839 1912 aa12.77□□□□□ -0.37
SMG6-218ENST00000575454 QRICH2Q9H0J4 1663 aa12.76□□□□□ -0.37
SMG6-218ENST00000575454 MSH5O43196 834 aa12.75□□□□□ -0.37
SMG6-218ENST00000575454 SLC24A1O60721 1099 aa12.75□□□□□ -0.37
SMG6-218ENST00000575454 NEUROD1Q13562 356 aa12.75□□□□□ -0.37
SMG6-218ENST00000575454 EDC4Q6P2E9 1401 aaKnown RBP12.75□□□□□ -0.37
SMG6-218ENST00000575454 ANKRD36BQ8N2N9 1353 aa12.75□□□□□ -0.37
SMG6-218ENST00000575454 ZCRB1Q8TBF4 217 aaKnown RBP12.75□□□□□ -0.37
SMG6-218ENST00000575454 CARD11Q9BXL7 1154 aa12.75□□□□□ -0.37
SMG6-218ENST00000575454 SLC12A5Q9H2X9 1139 aa12.75□□□□□ -0.37
SMG6-218ENST00000575454 CCNL1Q9UK58 526 aaPredicted RBP12.75□□□□□ -0.37
SMG6-218ENST00000575454 FLAD1Q8NFF5 587 aa12.74□□□□□ -0.37
SMG6-218ENST00000575454 NLGN2Q8NFZ4 835 aa12.74□□□□□ -0.37
SMG6-218ENST00000575454 LTV1Q96GA3 475 aaPredicted RBP12.74□□□□□ -0.37
SMG6-218ENST00000575454 COG3Q96JB2 828 aa12.74□□□□□ -0.37
SMG6-218ENST00000575454 SIN3AQ96ST3 1273 aa12.74□□□□□ -0.37
SMG6-218ENST00000575454 CGNL1Q0VF96 1302 aa12.73□□□□□ -0.37
SMG6-218ENST00000575454 AMPHP49418 695 aa12.73□□□□□ -0.37
SMG6-218ENST00000575454 CD2APQ9Y5K6 639 aa12.73□□□□□ -0.37
SMG6-218ENST00000575454 USP47Q96K76 1375 aa12.72□□□□□ -0.37
SMG6-218ENST00000575454 SBF2Q86WG5 1849 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms