RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 BLMP54132 1417 aaPredicted RBP24.69■■□□□ 1.54
CCDC40-213ENST00000574933 IP6K1Q92551 441 aa24.68■■□□□ 1.54
CCDC40-213ENST00000574933 BCL9LQ86UU0 1499 aa24.68■■□□□ 1.54
CCDC40-213ENST00000574933 FLT4P35916 1363 aa24.67■■□□□ 1.54
CCDC40-213ENST00000574933 FAM208AQ9UK61 1670 aaKnown RBP24.67■■□□□ 1.54
CCDC40-213ENST00000574933 TNNT2P45379 298 aaPredicted RBP24.67■■□□□ 1.54
CCDC40-213ENST00000574933 EMILIN1Q9Y6C2 1016 aa24.67■■□□□ 1.54
CCDC40-213ENST00000574933 CDK12Q9NYV4 1490 aaPredicted RBP24.66■■□□□ 1.54
CCDC40-213ENST00000574933 AFF2P51816 1311 aa24.65■■□□□ 1.54
CCDC40-213ENST00000574933 COL5A2P05997 1499 aaPredicted RBP24.65■■□□□ 1.54
CCDC40-213ENST00000574933 HOXC9P31274 260 aa24.65■■□□□ 1.54
CCDC40-213ENST00000574933 PRKRIP1Q9H875 184 aaPredicted RBP24.65■■□□□ 1.54
CCDC40-213ENST00000574933 AXIN2Q9Y2T1 843 aa24.65■■□□□ 1.54
CCDC40-213ENST00000574933 AMPHP49418 695 aa24.64■■□□□ 1.54
CCDC40-213ENST00000574933 BTG4Q9NY30 223 aa24.64■■□□□ 1.54
CCDC40-213ENST00000574933 INSRP06213 1382 aa24.64■■□□□ 1.53
CCDC40-213ENST00000574933 PPP2R1AP30153 589 aa24.63■■□□□ 1.53
CCDC40-213ENST00000574933 CNGB1Q14028 1251 aaPredicted RBP24.63■■□□□ 1.53
CCDC40-213ENST00000574933 ZBTB7CA1YPR0 619 aa24.62■■□□□ 1.53
CCDC40-213ENST00000574933 UNC5CLQ8IV45 518 aa24.62■■□□□ 1.53
CCDC40-213ENST00000574933 RGPD2P0DJD1 1756 aa24.62■■□□□ 1.53
CCDC40-213ENST00000574933 MTHFSP49914 203 aa24.6■■□□□ 1.53
CCDC40-213ENST00000574933 USP21Q9UK80 565 aa24.6■■□□□ 1.53
CCDC40-213ENST00000574933 ERBB3P21860 1342 aa24.6■■□□□ 1.53
CCDC40-213ENST00000574933 ATRNO75882 1429 aa24.59■■□□□ 1.53
CCDC40-213ENST00000574933 HSP90AB2PQ58FF8 381 aa24.58■■□□□ 1.53
CCDC40-213ENST00000574933 ZNF772Q68DY9 489 aaPredicted RBP24.58■■□□□ 1.53
CCDC40-213ENST00000574933 MYBBP1AQ9BQG0 1328 aaKnown RBP24.58■■□□□ 1.52
CCDC40-213ENST00000574933 RGS17Q9UGC6 210 aaPredicted RBP24.57■■□□□ 1.52
CCDC40-213ENST00000574933 WDR17Q8IZU2 1322 aa24.57■■□□□ 1.52
CCDC40-213ENST00000574933 COL3A1P02461 1466 aaPredicted RBP24.57■■□□□ 1.52
CCDC40-213ENST00000574933 PPM1GO15355 546 aaPredicted RBP24.56■■□□□ 1.52
CCDC40-213ENST00000574933 ANP32CO43423 234 aa24.55■■□□□ 1.52
CCDC40-213ENST00000574933 VPS72Q15906 364 aa24.55■■□□□ 1.52
CCDC40-213ENST00000574933 ANKRD24Q8TF21 1146 aa24.55■■□□□ 1.52
CCDC40-213ENST00000574933 RGPD1P0DJD0 1748 aa24.55■■□□□ 1.52
CCDC40-213ENST00000574933 WNK3Q9BYP7 1800 aa24.54■■□□□ 1.52
CCDC40-213ENST00000574933 EVA1CP58658 441 aa24.54■■□□□ 1.52
CCDC40-213ENST00000574933 TRPC5Q9UL62 973 aaPredicted RBP24.54■■□□□ 1.52
CCDC40-213ENST00000574933 CRB1P82279 1406 aa24.53■■□□□ 1.52
CCDC40-213ENST00000574933 LARP1Q6PKG0 1096 aaKnown RBP24.52■■□□□ 1.52
CCDC40-213ENST00000574933 PHF23Q9BUL5 403 aaPredicted RBP24.52■■□□□ 1.52
CCDC40-213ENST00000574933 STRN4Q9NRL3 753 aa24.52■■□□□ 1.52
CCDC40-213ENST00000574933 GLI3P10071 1580 aa24.51■■□□□ 1.51
CCDC40-213ENST00000574933 DIEXFQ68CQ4 756 aaKnown RBP24.51■■□□□ 1.51
CCDC40-213ENST00000574933 SPATA31A5Q5VU36 1347 aa24.51■■□□□ 1.51
CCDC40-213ENST00000574933 SPATA31A7Q8IWB4 1347 aa24.51■■□□□ 1.51
CCDC40-213ENST00000574933 NCAPD2Q15021 1401 aa24.51■■□□□ 1.51
CCDC40-213ENST00000574933 EIF4A2Q14240 407 aaKnown RBP24.5■■□□□ 1.51
CCDC40-213ENST00000574933 QTRT2Q9H974 415 aaKnown RBP24.5■■□□□ 1.51
CCDC40-213ENST00000574933 CFAP53Q96M91 514 aa24.49■■□□□ 1.51
CCDC40-213ENST00000574933 CARD10Q9BWT7 1032 aa24.49■■□□□ 1.51
CCDC40-213ENST00000574933 SPATA31A1Q5TZJ5 1347 aa24.49■■□□□ 1.51
CCDC40-213ENST00000574933 CSB-PGBD3P0DP91 1061 aa24.48■■□□□ 1.51
CCDC40-213ENST00000574933 IL13P35225 146 aa24.48■■□□□ 1.51
CCDC40-213ENST00000574933 LTV1Q96GA3 475 aaPredicted RBP24.48■■□□□ 1.51
CCDC40-213ENST00000574933 TOM1L2Q6ZVM7 507 aa24.47■■□□□ 1.51
CCDC40-213ENST00000574933 GJD4Q96KN9 370 aaPredicted RBP24.47■■□□□ 1.51
CCDC40-213ENST00000574933 DIAPH1O60610 1272 aaKnown RBP24.46■■□□□ 1.51
CCDC40-213ENST00000574933 THRAP3Q9Y2W1 955 aaKnown RBP24.46■■□□□ 1.51
CCDC40-213ENST00000574933 NBPF6Q5VWK0 638 aa24.45■■□□□ 1.5
CCDC40-213ENST00000574933 POTEAQ6S8J7 498 aa24.45■■□□□ 1.5
CCDC40-213ENST00000574933 NBPF4Q96M43 638 aa24.45■■□□□ 1.5
CCDC40-213ENST00000574933 IGSF1Q8N6C5 1336 aa24.44■■□□□ 1.5
CCDC40-213ENST00000574933 EYA1Q99502 592 aa24.44■■□□□ 1.5
CCDC40-213ENST00000574933 NLRP2Q9NX02 1062 aa24.44■■□□□ 1.5
CCDC40-213ENST00000574933 THSD7AQ9UPZ6 1657 aa24.43■■□□□ 1.5
CCDC40-213ENST00000574933 RBM6P78332 1123 aaKnown RBP24.43■■□□□ 1.5
CCDC40-213ENST00000574933 BARGINQ6ZT62 677 aa24.43■■□□□ 1.5
CCDC40-213ENST00000574933 TCP11L2Q8N4U5 519 aa24.43■■□□□ 1.5
CCDC40-213ENST00000574933 PARP4Q9UKK3 1724 aaKnown RBP24.43■■□□□ 1.5
CCDC40-213ENST00000574933 ONECUT3O60422 494 aaPredicted RBP24.42■■□□□ 1.5
CCDC40-213ENST00000574933 CCDC9Q9Y3X0 531 aaKnown RBP24.41■■□□□ 1.5
CCDC40-213ENST00000574933 DISP2A7MBM2 1401 aa24.41■■□□□ 1.5
CCDC40-213ENST00000574933 KDRP35968 1356 aa24.4■■□□□ 1.5
CCDC40-213ENST00000574933 BRWD3Q6RI45 1802 aa24.38■■□□□ 1.49
CCDC40-213ENST00000574933 RXRBP28702 533 aa24.38■■□□□ 1.49
CCDC40-213ENST00000574933 NUDCQ9Y266 331 aa24.38■■□□□ 1.49
CCDC40-213ENST00000574933 PLEKHG2Q9H7P9 1386 aa24.38■■□□□ 1.49
CCDC40-213ENST00000574933 CDCA7Q9BWT1 371 aaPredicted RBP24.37■■□□□ 1.49
CCDC40-213ENST00000574933 USP35Q9P2H5 1018 aa24.37■■□□□ 1.49
CCDC40-213ENST00000574933 PKD1L3Q7Z443 1732 aa24.36■■□□□ 1.49
CCDC40-213ENST00000574933 LRRC37A3O60309 1634 aa24.35■■□□□ 1.49
CCDC40-213ENST00000574933 USHBP1Q8N6Y0 703 aa24.34■■□□□ 1.49
CCDC40-213ENST00000574933 SHANK3Q9BYB0 1731 aa24.34■■□□□ 1.49
CCDC40-213ENST00000574933 IL2RBP14784 551 aa24.33■■□□□ 1.49
CCDC40-213ENST00000574933 FAM98CQ17RN3 349 aaKnown RBP24.33■■□□□ 1.49
CCDC40-213ENST00000574933 CCDC184Q52MB2 194 aa24.33■■□□□ 1.49
CCDC40-213ENST00000574933 MEGF6O75095 1541 aa24.33■■□□□ 1.49
CCDC40-213ENST00000574933 OVOS2A0A0G2JMS6 1433 aa24.32■■□□□ 1.48
CCDC40-213ENST00000574933 CCER2I3L3R5 266 aa24.31■■□□□ 1.48
CCDC40-213ENST00000574933 U2SURPO15042 1029 aaKnown RBP24.31■■□□□ 1.48
CCDC40-213ENST00000574933 SULT6B1Q6IMI4 303 aa24.31■■□□□ 1.48
CCDC40-213ENST00000574933 AEBP1Q8IUX7 1158 aa24.3■■□□□ 1.48
CCDC40-213ENST00000574933 RGS12O14924 1447 aa24.29■■□□□ 1.48
CCDC40-213ENST00000574933 RAPGEF4Q8WZA2 1011 aa24.29■■□□□ 1.48
CCDC40-213ENST00000574933 MRS2Q9HD23 443 aa24.29■■□□□ 1.48
CCDC40-213ENST00000574933 FCHSD2O94868 740 aa24.28■■□□□ 1.48
CCDC40-213ENST00000574933 U2AF1L5P0DN76 240 aaPredicted RBP24.28■■□□□ 1.48
CCDC40-213ENST00000574933 U2AF1Q01081 240 aaKnown RBP eCLIP24.28■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms