RNA–Protein interactions for RNA: ENST00000571249.1

CHD3-213, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 330 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-213ENST00000571249 PHRF1Q9P1Y6 1649 aaKnown RBP10.75□□□□□ -0.69
CHD3-213ENST00000571249 CRYBG1Q9Y4K1 1723 aa10.75□□□□□ -0.69
CHD3-213ENST00000571249 MLLT1Q03111 559 aaPredicted RBP10.74□□□□□ -0.69
CHD3-213ENST00000571249 PARP4Q9UKK3 1724 aaKnown RBP10.74□□□□□ -0.69
CHD3-213ENST00000571249 PNPLA7Q6ZV29 1317 aa10.74□□□□□ -0.69
CHD3-213ENST00000571249 SAFB2Q14151 953 aaKnown RBP eCLIP10.73□□□□□ -0.69
CHD3-213ENST00000571249 AKT1S1Q96B36 256 aa10.73□□□□□ -0.69
CHD3-213ENST00000571249 ACIN1Q9UKV3 1341 aaKnown RBP10.73□□□□□ -0.69
CHD3-213ENST00000571249 GPRASP1Q5JY77 1395 aa10.72□□□□□ -0.69
CHD3-213ENST00000571249 ABCC11Q96J66 1382 aa10.72□□□□□ -0.69
CHD3-213ENST00000571249 CLTCL1P53675 1640 aa10.72□□□□□ -0.69
CHD3-213ENST00000571249 PAPPAQ13219 1627 aa10.72□□□□□ -0.69
CHD3-213ENST00000571249 ACSBG1Q96GR2 724 aa10.71□□□□□ -0.69
CHD3-213ENST00000571249 COL24A1Q17RW2 1714 aa10.7□□□□□ -0.7
CHD3-213ENST00000571249 ARHGEF28Q8N1W1 1705 aaKnown RBP10.7□□□□□ -0.7
CHD3-213ENST00000571249 TOPAZ1Q8N9V7 1692 aa10.7□□□□□ -0.7
CHD3-213ENST00000571249 ADGRF5Q8IZF2 1346 aa10.7□□□□□ -0.7
CHD3-213ENST00000571249 KCNQ4P56696 695 aa10.7□□□□□ -0.7
CHD3-213ENST00000571249 FSTL1Q12841 308 aa10.7□□□□□ -0.7
CHD3-213ENST00000571249 MSL1Q68DK7 614 aa10.7□□□□□ -0.7
CHD3-213ENST00000571249 PDE4DIPQ5VU43 2346 aa10.7□□□□□ -0.7
CHD3-213ENST00000571249 LRRC37A3O60309 1634 aa10.69□□□□□ -0.7
CHD3-213ENST00000571249 ABHD8Q96I13 439 aa10.69□□□□□ -0.7
CHD3-213ENST00000571249 BCL9O00512 1426 aa10.68□□□□□ -0.7
CHD3-213ENST00000571249 IFT172Q9UG01 1749 aa10.68□□□□□ -0.7
CHD3-213ENST00000571249 FOXN1O15353 648 aa10.68□□□□□ -0.7
CHD3-213ENST00000571249 C16orf71Q8IYS4 520 aaPredicted RBP10.68□□□□□ -0.7
CHD3-213ENST00000571249 TFCP2L1Q9NZI6 479 aa10.68□□□□□ -0.7
CHD3-213ENST00000571249 PRR36Q9H6K5 1346 aa10.67□□□□□ -0.7
CHD3-213ENST00000571249 NGDNQ8NEJ9 315 aaKnown RBP10.67□□□□□ -0.7
CHD3-213ENST00000571249 CD2APQ9Y5K6 639 aa10.67□□□□□ -0.7
CHD3-213ENST00000571249 TULP4Q9NRJ4 1543 aa10.67□□□□□ -0.7
CHD3-213ENST00000571249 USP19O94966 1318 aa10.66□□□□□ -0.7
CHD3-213ENST00000571249 RGS19P49795 217 aa10.66□□□□□ -0.7
CHD3-213ENST00000571249 FAM50AQ14320 339 aaKnown RBP10.66□□□□□ -0.7
CHD3-213ENST00000571249 HIRIP3Q9BW71 556 aaPredicted RBP10.66□□□□□ -0.7
CHD3-213ENST00000571249 COL5A2P05997 1499 aaPredicted RBP10.66□□□□□ -0.7
CHD3-213ENST00000571249 CRB1P82279 1406 aa10.66□□□□□ -0.7
CHD3-213ENST00000571249 RPGRIP1LQ68CZ1 1315 aa10.65□□□□□ -0.7
CHD3-213ENST00000571249 IGSF1Q8N6C5 1336 aa10.65□□□□□ -0.7
CHD3-213ENST00000571249 MSH5O43196 834 aa10.65□□□□□ -0.7
CHD3-213ENST00000571249 VPS8Q8N3P4 1428 aa10.65□□□□□ -0.7
CHD3-213ENST00000571249 TNRC18O15417 2968 aaPredicted RBP10.65□□□□□ -0.71
CHD3-213ENST00000571249 LMO7Q8WWI1 1683 aa10.64□□□□□ -0.71
CHD3-213ENST00000571249 ZBTB7CA1YPR0 619 aa10.64□□□□□ -0.71
CHD3-213ENST00000571249 CCDC85CA6NKD9 419 aa10.64□□□□□ -0.71
CHD3-213ENST00000571249 TOM1L2Q6ZVM7 507 aa10.64□□□□□ -0.71
CHD3-213ENST00000571249 COL23A1Q86Y22 540 aaPredicted RBP10.64□□□□□ -0.71
CHD3-213ENST00000571249 PRAM1Q96QH2 718 aa10.64□□□□□ -0.71
CHD3-213ENST00000571249 PRDM10Q9NQV6 1147 aa10.64□□□□□ -0.71
CHD3-213ENST00000571249 YTHDC2Q9H6S0 1430 aaKnown RBP10.64□□□□□ -0.71
CHD3-213ENST00000571249 SIRT1Q96EB6 747 aa10.63□□□□□ -0.71
CHD3-213ENST00000571249 RRAGCQ9HB90 399 aa10.63□□□□□ -0.71
CHD3-213ENST00000571249 KIAA1210Q9ULL0 1709 aa10.62□□□□□ -0.71
CHD3-213ENST00000571249 ANKARQ7Z5J8 1434 aa10.62□□□□□ -0.71
CHD3-213ENST00000571249 ATXN8OSP0DMR3 200 aa10.62□□□□□ -0.71
CHD3-213ENST00000571249 KIF1BO60333 1816 aa10.62□□□□□ -0.71
CHD3-213ENST00000571249 EXOC5O00471 708 aa10.61□□□□□ -0.71
CHD3-213ENST00000571249 CPDO75976 1380 aa10.61□□□□□ -0.71
CHD3-213ENST00000571249 LBX1P52954 281 aa10.6□□□□□ -0.71
CHD3-213ENST00000571249 TUBGCP6Q96RT7 1819 aa10.6□□□□□ -0.71
CHD3-213ENST00000571249 USP6P35125 1406 aa10.59□□□□□ -0.71
CHD3-213ENST00000571249 KNDC1Q76NI1 1749 aa10.59□□□□□ -0.71
CHD3-213ENST00000571249 GCP02774 474 aa10.59□□□□□ -0.71
CHD3-213ENST00000571249 SMC1BQ8NDV3 1235 aa10.59□□□□□ -0.71
CHD3-213ENST00000571249 MKRN1Q9UHC7 482 aaKnown RBP10.59□□□□□ -0.71
CHD3-213ENST00000571249 BRD4O60885 1362 aaPredicted RBP10.59□□□□□ -0.71
CHD3-213ENST00000571249 ANKRD30BQ9BXX2 1392 aa10.59□□□□□ -0.71
CHD3-213ENST00000571249 PPLO60437 1756 aa10.59□□□□□ -0.71
CHD3-213ENST00000571249 AKAP12Q02952 1782 aa10.58□□□□□ -0.72
CHD3-213ENST00000571249 CTCFP49711 727 aaPredicted RBP10.58□□□□□ -0.72
CHD3-213ENST00000571249 RNF216Q9NWF9 866 aaPredicted RBP10.58□□□□□ -0.72
CHD3-213ENST00000571249 AXIN2Q9Y2T1 843 aa10.58□□□□□ -0.72
CHD3-213ENST00000571249 QSER1Q2KHR3 1735 aa10.58□□□□□ -0.72
CHD3-213ENST00000571249 APLP2Q06481 763 aa10.57□□□□□ -0.72
CHD3-213ENST00000571249 RGL3Q3MIN7 710 aa10.57□□□□□ -0.72
CHD3-213ENST00000571249 SLC27A3Q5K4L6 730 aa10.57□□□□□ -0.72
CHD3-213ENST00000571249 ARHGAP27Q6ZUM4 889 aa10.57□□□□□ -0.72
CHD3-213ENST00000571249 SMIM5Q71RC9 77 aa10.57□□□□□ -0.72
CHD3-213ENST00000571249 ABTB2Q8N961 1025 aa10.57□□□□□ -0.72
CHD3-213ENST00000571249 CDCA7Q9BWT1 371 aaPredicted RBP10.57□□□□□ -0.72
CHD3-213ENST00000571249 POGKQ9P215 609 aa10.57□□□□□ -0.72
CHD3-213ENST00000571249 KAT6BQ8WYB5 2073 aa10.57□□□□□ -0.72
CHD3-213ENST00000571249 KCPQ6ZWJ8 1503 aa10.57□□□□□ -0.72
CHD3-213ENST00000571249 MINK1Q8N4C8 1332 aaPredicted RBP10.57□□□□□ -0.72
CHD3-213ENST00000571249 C9orf131Q5VYM1 1079 aa10.56□□□□□ -0.72
CHD3-213ENST00000571249 NHSQ6T4R5 1651 aa10.56□□□□□ -0.72
CHD3-213ENST00000571249 BTAF1O14981 1849 aa10.56□□□□□ -0.72
CHD3-213ENST00000571249 CFAP44Q96MT7 982 aa10.54□□□□□ -0.72
CHD3-213ENST00000571249 WDR17Q8IZU2 1322 aa10.54□□□□□ -0.72
CHD3-213ENST00000571249 ROCK1Q13464 1354 aa10.53□□□□□ -0.72
CHD3-213ENST00000571249 WASLO00401 505 aaPredicted RBP10.53□□□□□ -0.72
CHD3-213ENST00000571249 CFAP70Q5T0N1 1121 aa10.53□□□□□ -0.72
CHD3-213ENST00000571249 BCS1LQ9Y276 419 aa10.53□□□□□ -0.72
CHD3-213ENST00000571249 CICQ96RK0 1608 aaPredicted RBP10.53□□□□□ -0.72
CHD3-213ENST00000571249 AIDAQ96BJ3 306 aa10.52□□□□□ -0.73
CHD3-213ENST00000571249 CARD10Q9BWT7 1032 aa10.52□□□□□ -0.73
CHD3-213ENST00000571249 C14orf93Q9H972 538 aaKnown RBP10.52□□□□□ -0.73
CHD3-213ENST00000571249 KDM2BQ8NHM5 1336 aa10.52□□□□□ -0.73
CHD3-213ENST00000571249 PLCB2Q00722 1185 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms