RNA–Protein interactions for RNA: ENST00000570937.1

NUP88-202, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 361 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-202ENST00000570937 ST8SIA5O15466 376 aa8.6□□□□□ -1.03
NUP88-202ENST00000570937 FSHRP23945 695 aa8.6□□□□□ -1.03
NUP88-202ENST00000570937 NBPF20Q3BBV1 942 aa8.6□□□□□ -1.03
NUP88-202ENST00000570937 ZNF787Q6DD87 383 aa8.6□□□□□ -1.03
NUP88-202ENST00000570937 DZIP3Q86Y13 1208 aaKnown RBP8.6□□□□□ -1.03
NUP88-202ENST00000570937 ZNF592Q92610 1267 aa8.6□□□□□ -1.03
NUP88-202ENST00000570937 ZNF330Q9Y3S2 320 aaPredicted RBP8.6□□□□□ -1.03
NUP88-202ENST00000570937 ESPNB1AK53 854 aa8.58□□□□□ -1.04
NUP88-202ENST00000570937 TIMP2P16035 220 aa8.58□□□□□ -1.04
NUP88-202ENST00000570937 CCDC116Q8IYX3 515 aa8.58□□□□□ -1.04
NUP88-202ENST00000570937 UBTFP17480 764 aaKnown RBP8.57□□□□□ -1.04
NUP88-202ENST00000570937 ABL2P42684 1182 aa8.57□□□□□ -1.04
NUP88-202ENST00000570937 WASHC4Q2M389 1173 aa8.57□□□□□ -1.04
NUP88-202ENST00000570937 CAPN5O15484 640 aaPredicted RBP8.56□□□□□ -1.04
NUP88-202ENST00000570937 WDR4P57081 412 aaKnown RBP8.56□□□□□ -1.04
NUP88-202ENST00000570937 DHX9Q08211 1270 aaKnown RBP8.56□□□□□ -1.04
NUP88-202ENST00000570937 INTS6LQ5JSJ4 861 aaKnown RBP8.56□□□□□ -1.04
NUP88-202ENST00000570937 SEPT12Q8IYM1 358 aa8.56□□□□□ -1.04
NUP88-202ENST00000570937 POM121Q96HA1 1249 aa8.56□□□□□ -1.04
NUP88-202ENST00000570937 PCDHB9Q9Y5E1 797 aa8.56□□□□□ -1.04
NUP88-202ENST00000570937 EMILIN1Q9Y6C2 1016 aa8.56□□□□□ -1.04
NUP88-202ENST00000570937 RAD21O60216 631 aa8.55□□□□□ -1.04
NUP88-202ENST00000570937 CCDC125Q86Z20 511 aa8.55□□□□□ -1.04
NUP88-202ENST00000570937 DACH1Q9UI36 760 aa8.55□□□□□ -1.04
NUP88-202ENST00000570937 ZIC2O95409 532 aaPredicted RBP8.54□□□□□ -1.04
NUP88-202ENST00000570937 EIF4G2P78344 907 aaKnown RBP eCLIP8.54□□□□□ -1.04
NUP88-202ENST00000570937 PPP1R26Q5T8A7 1209 aaPredicted RBP8.54□□□□□ -1.04
NUP88-202ENST00000570937 ITPKCQ96DU7 683 aa8.54□□□□□ -1.04
NUP88-202ENST00000570937 VAC14Q08AM6 782 aa8.53□□□□□ -1.04
NUP88-202ENST00000570937 ATP13A2Q9NQ11 1180 aa8.53□□□□□ -1.04
NUP88-202ENST00000570937 POTECB2RU33 542 aa8.52□□□□□ -1.05
NUP88-202ENST00000570937 GIGYF1O75420 1035 aaPredicted RBP8.52□□□□□ -1.05
NUP88-202ENST00000570937 WWC1Q8IX03 1113 aa8.52□□□□□ -1.05
NUP88-202ENST00000570937 ZFAND3Q9H8U3 227 aa8.52□□□□□ -1.05
NUP88-202ENST00000570937 PGPEP1Q9NXJ5 209 aa8.52□□□□□ -1.05
NUP88-202ENST00000570937 ERVH48-1M5A8F1 160 aa8.51□□□□□ -1.05
NUP88-202ENST00000570937 SOX11P35716 441 aa8.51□□□□□ -1.05
NUP88-202ENST00000570937 RNF20Q5VTR2 975 aa8.51□□□□□ -1.05
NUP88-202ENST00000570937 TRIM46Q7Z4K8 759 aa8.5□□□□□ -1.05
NUP88-202ENST00000570937 MEIOBQ8N635 442 aa8.5□□□□□ -1.05
NUP88-202ENST00000570937 CEP126Q9P2H0 1117 aa8.5□□□□□ -1.05
NUP88-202ENST00000570937 A6NJR5 290 aa8.49□□□□□ -1.05
NUP88-202ENST00000570937 Q6ZVU0 165 aa8.49□□□□□ -1.05
NUP88-202ENST00000570937 TRIM52Q96A61 297 aa8.49□□□□□ -1.05
NUP88-202ENST00000570937 MRPL14Q6P1L8 145 aaKnown RBP8.48□□□□□ -1.05
NUP88-202ENST00000570937 FNBP4Q8N3X1 1017 aaPredicted RBP8.48□□□□□ -1.05
NUP88-202ENST00000570937 SENP2Q9HC62 589 aa8.48□□□□□ -1.05
NUP88-202ENST00000570937 TMPRSS4Q9NRS4 437 aa8.48□□□□□ -1.05
NUP88-202ENST00000570937 GMPR2Q9P2T1 348 aaKnown RBP8.48□□□□□ -1.05
NUP88-202ENST00000570937 LILRA1O75019 489 aa8.47□□□□□ -1.05
NUP88-202ENST00000570937 BMP1P13497 986 aa8.47□□□□□ -1.05
NUP88-202ENST00000570937 RAB15P59190 212 aa8.47□□□□□ -1.05
NUP88-202ENST00000570937 PHTF2Q8N3S3 785 aa8.47□□□□□ -1.05
NUP88-202ENST00000570937 ZNF784Q8NCA9 323 aaPredicted RBP8.47□□□□□ -1.05
NUP88-202ENST00000570937 KIFC2Q96AC6 838 aa8.47□□□□□ -1.05
NUP88-202ENST00000570937 CLUAP1Q96AJ1 413 aa8.47□□□□□ -1.05
NUP88-202ENST00000570937 ZNF775Q96BV0 537 aaPredicted RBP8.47□□□□□ -1.05
NUP88-202ENST00000570937 SEMA3FQ13275 785 aa8.46□□□□□ -1.06
NUP88-202ENST00000570937 PROSER2Q86WR7 435 aaPredicted RBP8.46□□□□□ -1.06
NUP88-202ENST00000570937 TRIM47Q96LD4 638 aa8.46□□□□□ -1.06
NUP88-202ENST00000570937 ALG2Q9H553 416 aa8.46□□□□□ -1.06
NUP88-202ENST00000570937 CHIC2Q9UKJ5 165 aa8.46□□□□□ -1.06
NUP88-202ENST00000570937 CBLBQ13191 982 aa8.45□□□□□ -1.06
NUP88-202ENST00000570937 ZFP42Q96MM3 310 aa8.45□□□□□ -1.06
NUP88-202ENST00000570937 TSEN34Q9BSV6 310 aaKnown RBP8.45□□□□□ -1.06
NUP88-202ENST00000570937 GTF3C3Q9Y5Q9 886 aa8.45□□□□□ -1.06
NUP88-202ENST00000570937 ERVK-9P63128 1117 aa8.44□□□□□ -1.06
NUP88-202ENST00000570937 SCARF1Q14162 830 aa8.44□□□□□ -1.06
NUP88-202ENST00000570937 LINC00528Q8N1L1 170 aa8.44□□□□□ -1.06
NUP88-202ENST00000570937 C11orf95C9JLR9 678 aaPredicted RBP8.43□□□□□ -1.06
NUP88-202ENST00000570937 UPP2O95045 317 aa8.43□□□□□ -1.06
NUP88-202ENST00000570937 ADD1P35611 737 aaKnown RBP8.43□□□□□ -1.06
NUP88-202ENST00000570937 SLFNL1Q499Z3 407 aa8.43□□□□□ -1.06
NUP88-202ENST00000570937 CC2D2BQ6DHV5 1058 aa8.43□□□□□ -1.06
NUP88-202ENST00000570937 CCDC85AQ96PX6 553 aaPredicted RBP8.43□□□□□ -1.06
NUP88-202ENST00000570937 PCDHB11Q9Y5F2 797 aa8.43□□□□□ -1.06
NUP88-202ENST00000570937 POM121CA8CG34 1229 aa8.42□□□□□ -1.06
NUP88-202ENST00000570937 ADH1AP07327 375 aa8.42□□□□□ -1.06
NUP88-202ENST00000570937 PURBQ96QR8 312 aaKnown RBP8.42□□□□□ -1.06
NUP88-202ENST00000570937 RNF135Q8IUD6 432 aa8.41□□□□□ -1.06
NUP88-202ENST00000570937 KDF1Q8NAX2 398 aaPredicted RBP8.41□□□□□ -1.06
NUP88-202ENST00000570937 ADAMTS19Q8TE59 1207 aa8.41□□□□□ -1.06
NUP88-202ENST00000570937 CYLDQ9NQC7 956 aa8.41□□□□□ -1.06
NUP88-202ENST00000570937 SPINT1O43278 529 aa8.4□□□□□ -1.06
NUP88-202ENST00000570937 BMP2P12643 396 aa8.4□□□□□ -1.06
NUP88-202ENST00000570937 SNRPBP14678 240 aaKnown RBP8.4□□□□□ -1.06
NUP88-202ENST00000570937 TRAK2O60296 914 aa8.39□□□□□ -1.07
NUP88-202ENST00000570937 SCTRP47872 440 aa8.39□□□□□ -1.07
NUP88-202ENST00000570937 MAP7D1Q3KQU3 841 aa8.39□□□□□ -1.07
NUP88-202ENST00000570937 C6orf118Q5T5N4 469 aa8.39□□□□□ -1.07
NUP88-202ENST00000570937 NFATC2IPQ8NCF5 419 aa8.39□□□□□ -1.07
NUP88-202ENST00000570937 CDCA7Q9BWT1 371 aaPredicted RBP8.39□□□□□ -1.07
NUP88-202ENST00000570937 SOS2Q07890 1332 aaPredicted RBP8.38□□□□□ -1.07
NUP88-202ENST00000570937 PTGIRP43119 386 aa8.38□□□□□ -1.07
NUP88-202ENST00000570937 TSGA10IPQ3SY00 556 aa8.38□□□□□ -1.07
NUP88-202ENST00000570937 AGBL1Q96MI9 1066 aa8.38□□□□□ -1.07
NUP88-202ENST00000570937 OSBPL3Q9H4L5 887 aa8.38□□□□□ -1.07
NUP88-202ENST00000570937 DOLKQ9UPQ8 538 aa8.38□□□□□ -1.07
NUP88-202ENST00000570937 RELBQ01201 579 aa8.37□□□□□ -1.07
NUP88-202ENST00000570937 HDGFL1Q5TGJ6 251 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms