RNA–Protein interactions for RNA: ENST00000569916.1

CNOT1-220, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

TSL 3

Gene CNOT1, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-220ENST00000569916 EVA1CP58658 441 aa18.22■□□□□ 0.51
CNOT1-220ENST00000569916 LARP1Q6PKG0 1096 aaKnown RBP18.22■□□□□ 0.51
CNOT1-220ENST00000569916 PARP4Q9UKK3 1724 aaKnown RBP18.22■□□□□ 0.51
CNOT1-220ENST00000569916 A0A0G2JS52 829 aa18.21■□□□□ 0.51
CNOT1-220ENST00000569916 MYT1Q01538 1121 aa18.21■□□□□ 0.51
CNOT1-220ENST00000569916 CRB1P82279 1406 aa18.21■□□□□ 0.51
CNOT1-220ENST00000569916 EIF4G2P78344 907 aaKnown RBP eCLIP18.2■□□□□ 0.5
CNOT1-220ENST00000569916 KRT27Q7Z3Y8 459 aa18.2■□□□□ 0.5
CNOT1-220ENST00000569916 HSPA5P11021 654 aaKnown RBP18.19■□□□□ 0.5
CNOT1-220ENST00000569916 USP35Q9P2H5 1018 aa18.19■□□□□ 0.5
CNOT1-220ENST00000569916 AXIN2Q9Y2T1 843 aa18.19■□□□□ 0.5
CNOT1-220ENST00000569916 LRRC37A3O60309 1634 aa18.18■□□□□ 0.5
CNOT1-220ENST00000569916 BARGINQ6ZT62 677 aa18.17■□□□□ 0.5
CNOT1-220ENST00000569916 RGPD1P0DJD0 1748 aa18.16■□□□□ 0.5
CNOT1-220ENST00000569916 TCP11L2Q8N4U5 519 aa18.16■□□□□ 0.5
CNOT1-220ENST00000569916 WDR17Q8IZU2 1322 aa18.16■□□□□ 0.5
CNOT1-220ENST00000569916 BLMP54132 1417 aaPredicted RBP18.15■□□□□ 0.5
CNOT1-220ENST00000569916 TNS1Q9HBL0 1735 aaKnown RBP18.15■□□□□ 0.5
CNOT1-220ENST00000569916 THRAP3Q9Y2W1 955 aaKnown RBP18.15■□□□□ 0.5
CNOT1-220ENST00000569916 FAM208AQ9UK61 1670 aaKnown RBP18.14■□□□□ 0.49
CNOT1-220ENST00000569916 NSD3Q9BZ95 1437 aa18.14■□□□□ 0.49
CNOT1-220ENST00000569916 CCDC125Q86Z20 511 aa18.13■□□□□ 0.49
CNOT1-220ENST00000569916 COG3Q96JB2 828 aa18.13■□□□□ 0.49
CNOT1-220ENST00000569916 ANKRD26Q9UPS8 1709 aa18.12■□□□□ 0.49
CNOT1-220ENST00000569916 FYB1O15117 783 aa18.12■□□□□ 0.49
CNOT1-220ENST00000569916 TOM1L2Q6ZVM7 507 aa18.12■□□□□ 0.49
CNOT1-220ENST00000569916 CARD14Q9BXL6 1004 aa18.12■□□□□ 0.49
CNOT1-220ENST00000569916 FAM182BQ5T319 152 aa18.11■□□□□ 0.49
CNOT1-220ENST00000569916 ERBB3P21860 1342 aa18.11■□□□□ 0.49
CNOT1-220ENST00000569916 PEAK1Q9H792 1746 aa18.11■□□□□ 0.49
CNOT1-220ENST00000569916 DISP2A7MBM2 1401 aa18.1■□□□□ 0.49
CNOT1-220ENST00000569916 GGNBP2Q9H3C7 697 aa18.1■□□□□ 0.49
CNOT1-220ENST00000569916 CSB-PGBD3P0DP91 1061 aa18.09■□□□□ 0.49
CNOT1-220ENST00000569916 CARD10Q9BWT7 1032 aa18.09■□□□□ 0.49
CNOT1-220ENST00000569916 RGPD2P0DJD1 1756 aa18.09■□□□□ 0.49
CNOT1-220ENST00000569916 MAP3K19Q56UN5 1328 aa18.08■□□□□ 0.49
CNOT1-220ENST00000569916 POLR3GLQ9BT43 218 aa18.08■□□□□ 0.48
CNOT1-220ENST00000569916 CCDC7Q96M83 1385 aa18.07■□□□□ 0.48
CNOT1-220ENST00000569916 C11orf95C9JLR9 678 aaPredicted RBP18.07■□□□□ 0.48
CNOT1-220ENST00000569916 FBLN1P23142 703 aa18.07■□□□□ 0.48
CNOT1-220ENST00000569916 SBF2Q86WG5 1849 aa18.07■□□□□ 0.48
CNOT1-220ENST00000569916 RTL1A6NKG5 1358 aa18.06■□□□□ 0.48
CNOT1-220ENST00000569916 PDE3BQ13370 1112 aa18.06■□□□□ 0.48
CNOT1-220ENST00000569916 ANKRD24Q8TF21 1146 aa18.06■□□□□ 0.48
CNOT1-220ENST00000569916 IP6K1Q92551 441 aa18.06■□□□□ 0.48
CNOT1-220ENST00000569916 HOXC9P31274 260 aa18.04■□□□□ 0.48
CNOT1-220ENST00000569916 SF3B2Q13435 895 aaKnown RBP18.04■□□□□ 0.48
CNOT1-220ENST00000569916 FAM196AQ6ZSG2 479 aa18.04■□□□□ 0.48
CNOT1-220ENST00000569916 DEFB132Q7Z7B7 95 aa18.04■□□□□ 0.48
CNOT1-220ENST00000569916 MAP2P11137 1827 aaKnown RBP18.03■□□□□ 0.48
CNOT1-220ENST00000569916 RRS1Q15050 365 aaKnown RBP18.03■□□□□ 0.48
CNOT1-220ENST00000569916 CDCA7Q9BWT1 371 aaPredicted RBP18.03■□□□□ 0.48
CNOT1-220ENST00000569916 OVOS2A0A0G2JMS6 1433 aa18.03■□□□□ 0.48
CNOT1-220ENST00000569916 TNS2Q63HR2 1409 aa18.03■□□□□ 0.48
CNOT1-220ENST00000569916 CGNL1Q0VF96 1302 aa18.02■□□□□ 0.48
CNOT1-220ENST00000569916 AMPHP49418 695 aa18.02■□□□□ 0.48
CNOT1-220ENST00000569916 DDB1Q16531 1140 aa18.02■□□□□ 0.48
CNOT1-220ENST00000569916 NLRP2Q9NX02 1062 aa18.02■□□□□ 0.48
CNOT1-220ENST00000569916 KIF7Q2M1P5 1343 aa18■□□□□ 0.47
CNOT1-220ENST00000569916 KIF24Q5T7B8 1368 aa18■□□□□ 0.47
CNOT1-220ENST00000569916 RREB1Q92766 1687 aa17.99■□□□□ 0.47
CNOT1-220ENST00000569916 SHANK3Q9BYB0 1731 aa17.99■□□□□ 0.47
CNOT1-220ENST00000569916 TRIM37O94972 964 aa17.99■□□□□ 0.47
CNOT1-220ENST00000569916 BAG6P46379 1132 aa17.99■□□□□ 0.47
CNOT1-220ENST00000569916 LTV1Q96GA3 475 aaPredicted RBP17.99■□□□□ 0.47
CNOT1-220ENST00000569916 PANK3Q9H999 370 aa17.99■□□□□ 0.47
CNOT1-220ENST00000569916 FLT4P35916 1363 aa17.99■□□□□ 0.47
CNOT1-220ENST00000569916 RGPD3A6NKT7 1758 aaPredicted RBP17.98■□□□□ 0.47
CNOT1-220ENST00000569916 RGPD4Q7Z3J3 1758 aa17.98■□□□□ 0.47
CNOT1-220ENST00000569916 BCL9O00512 1426 aa17.98■□□□□ 0.47
CNOT1-220ENST00000569916 INSRP06213 1382 aa17.97■□□□□ 0.47
CNOT1-220ENST00000569916 MARCH10Q8NA82 808 aaPredicted RBP17.97■□□□□ 0.47
CNOT1-220ENST00000569916 IL2RBP14784 551 aa17.96■□□□□ 0.47
CNOT1-220ENST00000569916 EMILIN1Q9Y6C2 1016 aa17.96■□□□□ 0.47
CNOT1-220ENST00000569916 SMG6Q86US8 1419 aaKnown RBP17.96■□□□□ 0.47
CNOT1-220ENST00000569916 NHSQ6T4R5 1651 aa17.96■□□□□ 0.47
CNOT1-220ENST00000569916 NUP188Q5SRE5 1749 aa17.95■□□□□ 0.46
CNOT1-220ENST00000569916 NSD2O96028 1365 aa17.95■□□□□ 0.46
CNOT1-220ENST00000569916 EXOC5O00471 708 aa17.95■□□□□ 0.46
CNOT1-220ENST00000569916 EN1Q05925 392 aaPredicted RBP17.95■□□□□ 0.46
CNOT1-220ENST00000569916 HSP90AB2PQ58FF8 381 aa17.94■□□□□ 0.46
CNOT1-220ENST00000569916 MEGF6O75095 1541 aa17.93■□□□□ 0.46
CNOT1-220ENST00000569916 APBA3O96018 575 aa17.92■□□□□ 0.46
CNOT1-220ENST00000569916 EZH2Q15910 746 aaKnown RBP17.91■□□□□ 0.46
CNOT1-220ENST00000569916 NBPF6Q5VWK0 638 aa17.91■□□□□ 0.46
CNOT1-220ENST00000569916 NBPF4Q96M43 638 aa17.91■□□□□ 0.46
CNOT1-220ENST00000569916 CAMKK2Q96RR4 588 aa17.91■□□□□ 0.46
CNOT1-220ENST00000569916 PARD3Q8TEW0 1356 aa17.91■□□□□ 0.46
CNOT1-220ENST00000569916 DOT1LQ8TEK3 1739 aa17.9■□□□□ 0.46
CNOT1-220ENST00000569916 POLKQ9UBT6 870 aa17.9■□□□□ 0.46
CNOT1-220ENST00000569916 NCAPD2Q15021 1401 aa17.89■□□□□ 0.46
CNOT1-220ENST00000569916 PKD1L3Q7Z443 1732 aa17.89■□□□□ 0.46
CNOT1-220ENST00000569916 KNSTRNQ9Y448 316 aa17.89■□□□□ 0.45
CNOT1-220ENST00000569916 WASHC2AQ641Q2 1341 aa17.89■□□□□ 0.45
CNOT1-220ENST00000569916 BTAF1O14981 1849 aa17.88■□□□□ 0.45
CNOT1-220ENST00000569916 PPM1GO15355 546 aaPredicted RBP17.88■□□□□ 0.45
CNOT1-220ENST00000569916 TNNT2P45379 298 aaPredicted RBP17.88■□□□□ 0.45
CNOT1-220ENST00000569916 PTF1AQ7RTS3 328 aa17.88■□□□□ 0.45
CNOT1-220ENST00000569916 USHBP1Q8N6Y0 703 aa17.88■□□□□ 0.45
CNOT1-220ENST00000569916 AMER1Q5JTC6 1135 aaPredicted RBP17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms