RNA–Protein interactions for RNA: ENST00000569080.1

CDH3-209, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 291 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-209ENST00000569080 AXIN2Q9Y2T1 843 aa11.06□□□□□ -0.64
CDH3-209ENST00000569080 ANKRD36BQ8N2N9 1353 aa11.05□□□□□ -0.64
CDH3-209ENST00000569080 A0A0G2JS52 829 aa11.05□□□□□ -0.64
CDH3-209ENST00000569080 MYT1Q01538 1121 aa11.05□□□□□ -0.64
CDH3-209ENST00000569080 FAM182BQ5T319 152 aa11.05□□□□□ -0.64
CDH3-209ENST00000569080 TCP11L2Q8N4U5 519 aa11.05□□□□□ -0.64
CDH3-209ENST00000569080 HDGFL2Q7Z4V5 671 aaPredicted RBP11.04□□□□□ -0.64
CDH3-209ENST00000569080 DEFB132Q7Z7B7 95 aa11.04□□□□□ -0.64
CDH3-209ENST00000569080 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.04□□□□□ -0.64
CDH3-209ENST00000569080 KCNH5Q8NCM2 988 aa11.04□□□□□ -0.64
CDH3-209ENST00000569080 TMC1Q8TDI8 760 aa11.04□□□□□ -0.64
CDH3-209ENST00000569080 USP35Q9P2H5 1018 aa11.04□□□□□ -0.64
CDH3-209ENST00000569080 THRAP3Q9Y2W1 955 aaKnown RBP11.04□□□□□ -0.64
CDH3-209ENST00000569080 RREB1Q92766 1687 aa11.04□□□□□ -0.64
CDH3-209ENST00000569080 WDR17Q8IZU2 1322 aa11.04□□□□□ -0.64
CDH3-209ENST00000569080 KIF20BQ96Q89 1820 aa11.03□□□□□ -0.64
CDH3-209ENST00000569080 EVA1CP58658 441 aa11.03□□□□□ -0.64
CDH3-209ENST00000569080 TERF2IPQ9NYB0 399 aa11.03□□□□□ -0.64
CDH3-209ENST00000569080 SBF2Q86WG5 1849 aa11.02□□□□□ -0.64
CDH3-209ENST00000569080 FAM208AQ9UK61 1670 aaKnown RBP11.02□□□□□ -0.64
CDH3-209ENST00000569080 SOX12O15370 315 aa11.02□□□□□ -0.65
CDH3-209ENST00000569080 RGPD3A6NKT7 1758 aaPredicted RBP11.01□□□□□ -0.65
CDH3-209ENST00000569080 RGPD4Q7Z3J3 1758 aa11.01□□□□□ -0.65
CDH3-209ENST00000569080 ZBTB7CA1YPR0 619 aa11.01□□□□□ -0.65
CDH3-209ENST00000569080 SLC24A1O60721 1099 aa11.01□□□□□ -0.65
CDH3-209ENST00000569080 ERBB3P21860 1342 aa11.01□□□□□ -0.65
CDH3-209ENST00000569080 NUP188Q5SRE5 1749 aa11.01□□□□□ -0.65
CDH3-209ENST00000569080 TMF1P82094 1093 aa11□□□□□ -0.65
CDH3-209ENST00000569080 OVOS2A0A0G2JMS6 1433 aa11□□□□□ -0.65
CDH3-209ENST00000569080 TNS2Q63HR2 1409 aa11□□□□□ -0.65
CDH3-209ENST00000569080 ANKRD26Q9UPS8 1709 aa10.99□□□□□ -0.65
CDH3-209ENST00000569080 FAM196AQ6ZSG2 479 aa10.99□□□□□ -0.65
CDH3-209ENST00000569080 TOM1L2Q6ZVM7 507 aa10.99□□□□□ -0.65
CDH3-209ENST00000569080 CARD10Q9BWT7 1032 aa10.99□□□□□ -0.65
CDH3-209ENST00000569080 CCDC7Q96M83 1385 aa10.99□□□□□ -0.65
CDH3-209ENST00000569080 BCL9O00512 1426 aa10.99□□□□□ -0.65
CDH3-209ENST00000569080 SF3B2Q13435 895 aaKnown RBP10.98□□□□□ -0.65
CDH3-209ENST00000569080 LRP5O75197 1615 aa10.98□□□□□ -0.65
CDH3-209ENST00000569080 TRIM37O94972 964 aa10.97□□□□□ -0.65
CDH3-209ENST00000569080 BAG6P46379 1132 aa10.97□□□□□ -0.65
CDH3-209ENST00000569080 PDE3BQ13370 1112 aa10.97□□□□□ -0.65
CDH3-209ENST00000569080 PARD3Q8TEW0 1356 aa10.97□□□□□ -0.65
CDH3-209ENST00000569080 SHANK3Q9BYB0 1731 aa10.97□□□□□ -0.65
CDH3-209ENST00000569080 RGPD2P0DJD1 1756 aa10.97□□□□□ -0.65
CDH3-209ENST00000569080 NHSQ6T4R5 1651 aa10.96□□□□□ -0.65
CDH3-209ENST00000569080 RTL1A6NKG5 1358 aa10.96□□□□□ -0.65
CDH3-209ENST00000569080 MAP3K19Q56UN5 1328 aa10.96□□□□□ -0.65
CDH3-209ENST00000569080 EN1Q05925 392 aaPredicted RBP10.96□□□□□ -0.65
CDH3-209ENST00000569080 NSD3Q9BZ95 1437 aa10.95□□□□□ -0.66
CDH3-209ENST00000569080 FYB1O15117 783 aa10.95□□□□□ -0.66
CDH3-209ENST00000569080 CSB-PGBD3P0DP91 1061 aa10.95□□□□□ -0.66
CDH3-209ENST00000569080 DDB1Q16531 1140 aa10.95□□□□□ -0.66
CDH3-209ENST00000569080 CDCA8Q53HL2 280 aa10.95□□□□□ -0.66
CDH3-209ENST00000569080 CCER1Q8TC90 406 aaPredicted RBP10.95□□□□□ -0.66
CDH3-209ENST00000569080 CAMKK2Q96RR4 588 aa10.95□□□□□ -0.66
CDH3-209ENST00000569080 CDCA7Q9BWT1 371 aaPredicted RBP10.95□□□□□ -0.66
CDH3-209ENST00000569080 CARD14Q9BXL6 1004 aa10.95□□□□□ -0.66
CDH3-209ENST00000569080 FBLN1P23142 703 aa10.94□□□□□ -0.66
CDH3-209ENST00000569080 EZH2Q15910 746 aaKnown RBP10.94□□□□□ -0.66
CDH3-209ENST00000569080 MARCH10Q8NA82 808 aaPredicted RBP10.94□□□□□ -0.66
CDH3-209ENST00000569080 ANKRD24Q8TF21 1146 aa10.94□□□□□ -0.66
CDH3-209ENST00000569080 IP6K1Q92551 441 aa10.94□□□□□ -0.66
CDH3-209ENST00000569080 COG3Q96JB2 828 aa10.94□□□□□ -0.66
CDH3-209ENST00000569080 GGNBP2Q9H3C7 697 aa10.93□□□□□ -0.66
CDH3-209ENST00000569080 C11orf95C9JLR9 678 aaPredicted RBP10.92□□□□□ -0.66
CDH3-209ENST00000569080 HOXC9P31274 260 aa10.92□□□□□ -0.66
CDH3-209ENST00000569080 PTF1AQ7RTS3 328 aa10.92□□□□□ -0.66
CDH3-209ENST00000569080 MEGF6O75095 1541 aa10.92□□□□□ -0.66
CDH3-209ENST00000569080 APBA3O96018 575 aa10.91□□□□□ -0.66
CDH3-209ENST00000569080 HSPA5P11021 654 aaKnown RBP10.91□□□□□ -0.66
CDH3-209ENST00000569080 NLRP2Q9NX02 1062 aa10.91□□□□□ -0.66
CDH3-209ENST00000569080 KIF24Q5T7B8 1368 aa10.9□□□□□ -0.66
CDH3-209ENST00000569080 IL2RBP14784 551 aa10.9□□□□□ -0.66
CDH3-209ENST00000569080 EIF4G2P78344 907 aaKnown RBP eCLIP10.9□□□□□ -0.66
CDH3-209ENST00000569080 RRS1Q15050 365 aaKnown RBP10.9□□□□□ -0.66
CDH3-209ENST00000569080 BTAF1O14981 1849 aa10.9□□□□□ -0.66
CDH3-209ENST00000569080 PAPPAQ13219 1627 aa10.9□□□□□ -0.66
CDH3-209ENST00000569080 NCAPD2Q15021 1401 aa10.9□□□□□ -0.66
CDH3-209ENST00000569080 DOT1LQ8TEK3 1739 aa10.89□□□□□ -0.67
CDH3-209ENST00000569080 PSDA5PKW4 1024 aaPredicted RBP10.89□□□□□ -0.67
CDH3-209ENST00000569080 CASZ1Q86V15 1759 aa10.89□□□□□ -0.67
CDH3-209ENST00000569080 INSRP06213 1382 aa10.89□□□□□ -0.67
CDH3-209ENST00000569080 FLT4P35916 1363 aa10.89□□□□□ -0.67
CDH3-209ENST00000569080 EXOC5O00471 708 aa10.88□□□□□ -0.67
CDH3-209ENST00000569080 PKD1L3Q7Z443 1732 aa10.88□□□□□ -0.67
CDH3-209ENST00000569080 BCL11BQ9C0K0 894 aaPredicted RBP10.88□□□□□ -0.67
CDH3-209ENST00000569080 SMG6Q86US8 1419 aaKnown RBP10.87□□□□□ -0.67
CDH3-209ENST00000569080 MAP2P11137 1827 aaKnown RBP10.87□□□□□ -0.67
CDH3-209ENST00000569080 PLSCR1O15162 318 aa10.87□□□□□ -0.67
CDH3-209ENST00000569080 AMPHP49418 695 aa10.87□□□□□ -0.67
CDH3-209ENST00000569080 R3HDM1Q15032 1099 aaKnown RBP10.87□□□□□ -0.67
CDH3-209ENST00000569080 LTV1Q96GA3 475 aaPredicted RBP10.87□□□□□ -0.67
CDH3-209ENST00000569080 CGNL1Q0VF96 1302 aa10.86□□□□□ -0.67
CDH3-209ENST00000569080 HSP90AB2PQ58FF8 381 aa10.86□□□□□ -0.67
CDH3-209ENST00000569080 NBPF6Q5VWK0 638 aa10.86□□□□□ -0.67
CDH3-209ENST00000569080 NBPF4Q96M43 638 aa10.86□□□□□ -0.67
CDH3-209ENST00000569080 ANO8Q9HCE9 1232 aaPredicted RBP10.86□□□□□ -0.67
CDH3-209ENST00000569080 EMILIN1Q9Y6C2 1016 aa10.86□□□□□ -0.67
CDH3-209ENST00000569080 TOGARAM1Q9Y4F4 1720 aa10.85□□□□□ -0.67
CDH3-209ENST00000569080 KCNQ2O43526 872 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms