RNA–Protein interactions for RNA: ENST00000568676.5

HERPUD1-215, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 2

Gene HERPUD1, Length 571 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-215ENST00000568676 PPP1R1BQ9UD71 204 aaPredicted RBP22.64■■□□□ 1.21
HERPUD1-215ENST00000568676 PIK3C2AO00443 1686 aa22.63■■□□□ 1.21
HERPUD1-215ENST00000568676 TRPM1Q7Z4N2 1603 aa22.63■■□□□ 1.21
HERPUD1-215ENST00000568676 CPSF1Q10570 1443 aaKnown RBP22.63■■□□□ 1.21
HERPUD1-215ENST00000568676 NINLQ9Y2I6 1382 aa22.63■■□□□ 1.21
HERPUD1-215ENST00000568676 TTC21AQ8NDW8 1320 aa22.62■■□□□ 1.21
HERPUD1-215ENST00000568676 DCAF8L1A6NGE4 600 aa22.62■■□□□ 1.21
HERPUD1-215ENST00000568676 COL18A1P39060 1754 aa22.62■■□□□ 1.21
HERPUD1-215ENST00000568676 ARHGEF25Q86VW2 580 aa22.61■■□□□ 1.21
HERPUD1-215ENST00000568676 L3MBTL2Q969R5 705 aa22.6■■□□□ 1.21
HERPUD1-215ENST00000568676 TTC21BQ7Z4L5 1316 aa22.59■■□□□ 1.21
HERPUD1-215ENST00000568676 SBF2Q86WG5 1849 aa22.59■■□□□ 1.21
HERPUD1-215ENST00000568676 CARD10Q9BWT7 1032 aa22.59■■□□□ 1.21
HERPUD1-215ENST00000568676 AXIN2Q9Y2T1 843 aa22.59■■□□□ 1.21
HERPUD1-215ENST00000568676 WNK3Q9BYP7 1800 aa22.59■■□□□ 1.21
HERPUD1-215ENST00000568676 ABCC6O95255 1503 aa22.58■■□□□ 1.21
HERPUD1-215ENST00000568676 ROCK2O75116 1388 aaKnown RBP22.56■■□□□ 1.2
HERPUD1-215ENST00000568676 CCDC7Q96M83 1385 aa22.56■■□□□ 1.2
HERPUD1-215ENST00000568676 YY1P25490 414 aa22.56■■□□□ 1.2
HERPUD1-215ENST00000568676 CSB-PGBD3P0DP91 1061 aa22.55■■□□□ 1.2
HERPUD1-215ENST00000568676 MARCH10Q8NA82 808 aaPredicted RBP22.55■■□□□ 1.2
HERPUD1-215ENST00000568676 AKAP12Q02952 1782 aa22.55■■□□□ 1.2
HERPUD1-215ENST00000568676 EXOC5O00471 708 aa22.54■■□□□ 1.2
HERPUD1-215ENST00000568676 KTN1Q86UP2 1357 aaKnown RBP22.52■■□□□ 1.2
HERPUD1-215ENST00000568676 NFAT5O94916 1531 aa22.52■■□□□ 1.19
HERPUD1-215ENST00000568676 CASZ1Q86V15 1759 aa22.51■■□□□ 1.19
HERPUD1-215ENST00000568676 ANO8Q9HCE9 1232 aaPredicted RBP22.51■■□□□ 1.19
HERPUD1-215ENST00000568676 SBNO2Q9Y2G9 1366 aa22.5■■□□□ 1.19
HERPUD1-215ENST00000568676 TNS2Q63HR2 1409 aa22.49■■□□□ 1.19
HERPUD1-215ENST00000568676 PROM2Q8N271 834 aa22.49■■□□□ 1.19
HERPUD1-215ENST00000568676 TXNRD1Q16881 649 aa22.48■■□□□ 1.19
HERPUD1-215ENST00000568676 STK32BQ9NY57 414 aa22.48■■□□□ 1.19
HERPUD1-215ENST00000568676 USP31Q70CQ4 1352 aa22.48■■□□□ 1.19
HERPUD1-215ENST00000568676 SOX12O15370 315 aa22.47■■□□□ 1.19
HERPUD1-215ENST00000568676 PTF1AQ7RTS3 328 aa22.47■■□□□ 1.19
HERPUD1-215ENST00000568676 RGPD5Q99666 1765 aa22.47■■□□□ 1.19
HERPUD1-215ENST00000568676 MON2Q7Z3U7 1717 aa22.46■■□□□ 1.19
HERPUD1-215ENST00000568676 USP54Q70EL1 1684 aa22.46■■□□□ 1.19
HERPUD1-215ENST00000568676 SLC15A2Q16348 729 aa22.45■■□□□ 1.18
HERPUD1-215ENST00000568676 ERBB3P21860 1342 aa22.44■■□□□ 1.18
HERPUD1-215ENST00000568676 SIN3AQ96ST3 1273 aa22.44■■□□□ 1.18
HERPUD1-215ENST00000568676 PTGER2P43116 358 aa22.42■■□□□ 1.18
HERPUD1-215ENST00000568676 NHSQ6T4R5 1651 aa22.42■■□□□ 1.18
HERPUD1-215ENST00000568676 ZBTB7AO95365 584 aa22.41■■□□□ 1.18
HERPUD1-215ENST00000568676 NEUROD1Q13562 356 aa22.41■■□□□ 1.18
HERPUD1-215ENST00000568676 HDGFL2Q7Z4V5 671 aaPredicted RBP22.41■■□□□ 1.18
HERPUD1-215ENST00000568676 MTFR1LQ9H019 292 aa22.41■■□□□ 1.18
HERPUD1-215ENST00000568676 IL2RBP14784 551 aa22.4■■□□□ 1.18
HERPUD1-215ENST00000568676 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.4■■□□□ 1.18
HERPUD1-215ENST00000568676 PDGFDQ9GZP0 370 aaPredicted RBP22.39■■□□□ 1.17
HERPUD1-215ENST00000568676 NLRP2Q9NX02 1062 aa22.39■■□□□ 1.17
HERPUD1-215ENST00000568676 PUS7Q96PZ0 661 aaKnown RBP22.38■■□□□ 1.17
HERPUD1-215ENST00000568676 MYOM1P52179 1685 aa22.38■■□□□ 1.17
HERPUD1-215ENST00000568676 EDC4Q6P2E9 1401 aaKnown RBP22.38■■□□□ 1.17
HERPUD1-215ENST00000568676 CD163L1Q9NR16 1453 aa22.37■■□□□ 1.17
HERPUD1-215ENST00000568676 CARD11Q9BXL7 1154 aa22.37■■□□□ 1.17
HERPUD1-215ENST00000568676 TERF2IPQ9NYB0 399 aa22.37■■□□□ 1.17
HERPUD1-215ENST00000568676 ATF5Q9Y2D1 282 aaPredicted RBP22.37■■□□□ 1.17
HERPUD1-215ENST00000568676 NME9Q86XW9 330 aa22.36■■□□□ 1.17
HERPUD1-215ENST00000568676 TMC1Q8TDI8 760 aa22.35■■□□□ 1.17
HERPUD1-215ENST00000568676 ANKRD24Q8TF21 1146 aa22.35■■□□□ 1.17
HERPUD1-215ENST00000568676 LTN1O94822 1766 aa22.35■■□□□ 1.17
HERPUD1-215ENST00000568676 SYT17Q9BSW7 474 aa22.34■■□□□ 1.17
HERPUD1-215ENST00000568676 ACSBG1Q96GR2 724 aa22.33■■□□□ 1.17
HERPUD1-215ENST00000568676 SGIP1Q9BQI5 828 aa22.33■■□□□ 1.17
HERPUD1-215ENST00000568676 FHDC1Q9C0D6 1143 aaPredicted RBP22.33■■□□□ 1.17
HERPUD1-215ENST00000568676 PAPPAQ13219 1627 aa22.32■■□□□ 1.16
HERPUD1-215ENST00000568676 MAP3K5Q99683 1374 aa22.31■■□□□ 1.16
HERPUD1-215ENST00000568676 SLC24A1O60721 1099 aa22.31■■□□□ 1.16
HERPUD1-215ENST00000568676 SLC12A5Q9H2X9 1139 aa22.31■■□□□ 1.16
HERPUD1-215ENST00000568676 FAM208AQ9UK61 1670 aaKnown RBP22.3■■□□□ 1.16
HERPUD1-215ENST00000568676 BTAF1O14981 1849 aa22.29■■□□□ 1.16
HERPUD1-215ENST00000568676 A0A1W2PP64 1363 aa22.29■■□□□ 1.16
HERPUD1-215ENST00000568676 SLC27A3Q5K4L6 730 aa22.29■■□□□ 1.16
HERPUD1-215ENST00000568676 IP6K1Q92551 441 aa22.29■■□□□ 1.16
HERPUD1-215ENST00000568676 ARXQ96QS3 562 aa22.29■■□□□ 1.16
HERPUD1-215ENST00000568676 SLC16A10Q8TF71 515 aa22.28■■□□□ 1.16
HERPUD1-215ENST00000568676 TONSLQ96HA7 1378 aa22.25■■□□□ 1.15
HERPUD1-215ENST00000568676 ZNF784Q8NCA9 323 aaPredicted RBP22.24■■□□□ 1.15
HERPUD1-215ENST00000568676 ZNF827Q17R98 1081 aa22.23■■□□□ 1.15
HERPUD1-215ENST00000568676 COG3Q96JB2 828 aa22.23■■□□□ 1.15
HERPUD1-215ENST00000568676 LRRC4BQ9NT99 713 aa22.23■■□□□ 1.15
HERPUD1-215ENST00000568676 QSER1Q2KHR3 1735 aa22.23■■□□□ 1.15
HERPUD1-215ENST00000568676 DDX54Q8TDD1 881 aaKnown RBP22.22■■□□□ 1.15
HERPUD1-215ENST00000568676 AKT1S1Q96B36 256 aa22.22■■□□□ 1.15
HERPUD1-215ENST00000568676 ANKRD36BQ8N2N9 1353 aa22.21■■□□□ 1.15
HERPUD1-215ENST00000568676 POLD1P28340 1107 aa22.2■■□□□ 1.14
HERPUD1-215ENST00000568676 UTRNP46939 3433 aa22.19■■□□□ 1.14
HERPUD1-215ENST00000568676 HMGB2P26583 209 aaKnown RBP22.19■■□□□ 1.14
HERPUD1-215ENST00000568676 CHD4Q14839 1912 aa22.19■■□□□ 1.14
HERPUD1-215ENST00000568676 RTL1A6NKG5 1358 aa22.18■■□□□ 1.14
HERPUD1-215ENST00000568676 MAP3K19Q56UN5 1328 aa22.18■■□□□ 1.14
HERPUD1-215ENST00000568676 HOXC9P31274 260 aa22.18■■□□□ 1.14
HERPUD1-215ENST00000568676 AMPHP49418 695 aa22.18■■□□□ 1.14
HERPUD1-215ENST00000568676 LTV1Q96GA3 475 aaPredicted RBP22.18■■□□□ 1.14
HERPUD1-215ENST00000568676 CGNL1Q0VF96 1302 aa22.17■■□□□ 1.14
HERPUD1-215ENST00000568676 TESK2Q96S53 571 aa22.17■■□□□ 1.14
HERPUD1-215ENST00000568676 KAT6BQ8WYB5 2073 aa22.17■■□□□ 1.14
HERPUD1-215ENST00000568676 ZCRB1Q8TBF4 217 aaKnown RBP22.16■■□□□ 1.14
HERPUD1-215ENST00000568676 SYTL4Q96C24 671 aaPredicted RBP22.16■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 122.5 ms